Wall clock time and date at job start Tue Mar 31 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 O 1.42906 * 109.46748 * 179.97438 * 3 2 1 5 5 C 1.35661 * 116.99447 * 179.97438 * 4 3 2 6 6 C 1.38685 * 120.14707 * 359.73703 * 5 4 3 7 7 C 1.38067 * 120.10643 * 179.69831 * 6 5 4 8 8 C 1.38671 * 120.39465 * 0.59122 * 7 6 5 9 9 Cl 1.73592 * 119.85546 * 179.70365 * 8 7 6 10 10 C 1.37860 * 120.28170 * 359.67958 * 8 7 6 11 11 C 1.39804 * 119.88890 * 0.02719 * 10 8 7 12 12 C 1.47353 * 120.19068 * 179.97438 * 11 10 8 13 13 O 1.21542 * 119.99655 * 180.02562 * 12 11 10 14 14 O 1.34774 * 120.00276 * 0.02562 * 12 11 10 15 15 C 1.34856 * 116.99900 * 179.97438 * 14 12 11 16 16 H 1.08004 * 120.00441 * 0.02562 * 15 14 12 17 17 C 1.38796 * 120.00173 * 179.97438 * 15 14 12 18 18 N 1.31431 * 119.99800 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00190 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46670 * 90.00431 * 19 17 15 21 21 H 1.48504 * 109.47181 * 210.00205 * 19 17 15 22 22 H 1.48497 * 109.47123 * 330.00344 * 19 17 15 23 23 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 25 25 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 26 26 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 27 27 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 29 29 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 30 30 H 1.07997 * 119.94059 * 359.96515 * 6 5 4 31 31 H 1.07998 * 119.80230 * 180.27337 * 7 6 5 32 32 H 1.08006 * 120.05486 * 180.02562 * 10 8 7 33 33 H 0.96994 * 119.99617 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0847 2.6515 0.0001 6 6 3.3322 3.8164 -0.0064 7 6 3.9597 5.0462 -0.0005 8 6 5.3440 5.1276 -0.0005 9 17 6.1184 6.6812 -0.0009 10 6 6.1078 3.9799 0.0004 11 6 5.4848 2.7284 0.0006 12 6 6.2947 1.4974 0.0010 13 8 5.7493 0.4112 0.0008 14 8 7.6401 1.5759 0.0016 15 6 8.3213 0.4120 0.0024 16 1 7.7869 -0.5265 0.0022 17 6 9.7092 0.4202 0.0025 18 7 10.3596 1.5623 0.0023 19 14 10.6528 -1.1920 0.0030 20 1 10.9030 -1.6194 -1.3970 21 1 11.9492 -1.0066 0.7031 22 1 9.8563 -2.2315 0.7031 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9564 -0.8900 29 1 1.6764 1.9564 0.8900 30 1 2.2537 3.7614 -0.0117 31 1 3.3689 5.9503 -0.0012 32 1 7.1858 4.0475 0.0008 33 1 11.3296 1.5680 0.0028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750462420.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:29 Heat of formation + Delta-G solvation = -106.480151 kcal Electronic energy + Delta-G solvation = -19649.235240 eV Core-core repulsion = 16280.556356 eV Total energy + Delta-G solvation = -3368.678884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23792 -38.60010 -37.57988 -36.03084 -35.02074 -33.88165 -32.18453 -31.19864 -29.56031 -26.64481 -25.59128 -23.70175 -22.41565 -21.30906 -20.23790 -18.07254 -17.69855 -16.96918 -16.26217 -16.07693 -15.32967 -14.61091 -14.60748 -14.35335 -14.08259 -13.95852 -13.93361 -13.02076 -12.80164 -12.50642 -12.28633 -11.92478 -11.87361 -11.61800 -11.42469 -11.22438 -10.98189 -10.96312 -10.72030 -10.43935 -10.41130 -10.36925 -9.81679 -8.95437 -8.92562 -8.56928 -7.96843 -6.42647 -4.04795 1.03154 1.38745 2.32377 3.12646 3.19852 3.25816 3.26095 3.36069 3.91613 4.22948 4.45385 4.71253 4.81106 4.89449 4.99372 5.11327 5.16749 5.17439 5.28225 5.35821 5.53136 5.59218 5.81805 5.84689 5.99719 6.02215 6.11044 6.18416 6.33213 6.72842 6.86417 7.38664 7.56187 7.95630 8.75336 9.06156 9.87443 10.75243 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.011068 B = 0.006042 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.197376 B = 4633.420658 C = 7136.868254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.051 3.949 4 O -0.271 6.271 5 C 0.181 3.819 6 C -0.216 4.216 7 C -0.057 4.057 8 C -0.085 4.085 9 Cl -0.074 7.074 10 C -0.024 4.024 11 C -0.112 4.112 12 C 0.436 3.564 13 O -0.531 6.531 14 O -0.209 6.209 15 C -0.371 4.371 16 H 0.097 0.903 17 C 0.041 3.959 18 N -0.860 5.860 19 Si 0.944 3.056 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.266 1.266 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.158 0.842 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.495 5.694 -0.002 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.024 4.024 4 O -0.183 6.183 5 C 0.133 3.867 6 C -0.234 4.234 7 C -0.076 4.076 8 C -0.112 4.112 9 Cl -0.046 7.046 10 C -0.043 4.043 11 C -0.114 4.114 12 C 0.283 3.717 13 O -0.427 6.427 14 O -0.117 6.117 15 C -0.447 4.447 16 H 0.115 0.885 17 C -0.164 4.164 18 N -0.497 5.497 19 Si 0.769 3.231 20 H -0.198 1.198 21 H -0.203 1.203 22 H -0.190 1.190 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.176 0.824 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.244 5.403 0.003 16.173 hybrid contribution 0.380 -0.314 -0.009 0.493 sum -14.864 5.088 -0.006 15.711 Atomic orbital electron populations 1.21687 0.94564 1.02352 1.01871 1.21451 0.95391 0.94900 1.04377 1.22958 0.79362 0.99095 1.01006 1.86441 1.20126 1.25247 1.86438 1.19043 0.90776 0.84863 0.92025 1.21023 1.00085 0.91196 1.11144 1.20852 0.92296 0.97812 0.96627 1.20612 0.92663 0.86637 1.11294 1.98346 1.81435 1.27459 1.97337 1.21398 1.01739 0.88772 0.92404 1.18766 0.89690 0.92910 1.10024 1.20299 0.83135 0.87748 0.80500 1.90686 1.72831 1.29047 1.50178 1.83893 1.15998 1.36310 1.75461 1.21286 0.88295 0.83937 1.51215 0.88501 1.25361 0.95537 0.99175 0.96315 1.69981 1.08572 1.25275 1.45829 0.85656 0.78554 0.80148 0.78763 1.19846 1.20298 1.19039 0.91843 0.92555 0.92550 0.90543 0.90542 0.92148 0.92152 0.84372 0.84752 0.82416 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -1.40 6.30 -26.73 -0.17 -1.57 16 3 C 0.05 0.64 4.74 37.16 0.18 0.81 16 4 O -0.27 -4.96 8.21 -40.58 -0.33 -5.29 16 5 C 0.18 3.25 6.70 -38.67 -0.26 2.99 16 6 C -0.22 -2.94 9.03 -39.48 -0.36 -3.30 16 7 C -0.06 -0.75 9.81 -39.48 -0.39 -1.13 16 8 C -0.09 -1.33 6.31 -39.56 -0.25 -1.58 16 9 Cl -0.07 -1.05 28.94 -51.86 -1.50 -2.55 16 10 C -0.02 -0.46 9.39 -39.13 -0.37 -0.82 16 11 C -0.11 -2.36 5.89 -104.86 -0.62 -2.97 16 12 C 0.44 11.47 7.83 34.44 0.27 11.74 16 13 O -0.53 -14.93 14.41 -26.63 -0.38 -15.31 16 14 O -0.21 -6.09 8.99 -21.76 -0.20 -6.28 16 15 C -0.37 -11.07 9.65 30.94 0.30 -10.77 16 16 H 0.10 2.91 6.86 -52.48 -0.36 2.55 16 17 C 0.04 1.14 5.50 -17.52 -0.10 1.05 16 18 N -0.86 -25.06 13.67 55.49 0.76 -24.30 16 19 Si 0.94 21.34 29.55 -169.99 -5.02 16.32 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.63 7.65 -51.93 -0.40 0.24 16 29 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 30 H 0.14 1.41 6.30 -52.49 -0.33 1.08 16 31 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.16 3.19 7.61 -52.48 -0.40 2.79 16 33 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 309.30 15.07 4.66 4.66 Total: -1.00 -33.20 309.30 -6.96 -40.16 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -3.56 Total: -1.01 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.39 Total: -6.39 kcal Atomic # 7 Polarization: -25.06 SS G_CDS: 0.76 Total: -24.30 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.91 Total: -26.89 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.50 Total: -2.55 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.20 -6.96 -40.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750462420.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.317 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds