Wall clock time and date at job start Tue Mar 31 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 O 1.42906 * 109.46748 * 179.97438 * 3 2 1 5 5 C 1.35661 * 116.99447 * 179.97438 * 4 3 2 6 6 C 1.38685 * 120.14707 * 359.73703 * 5 4 3 7 7 C 1.38067 * 120.10643 * 179.69831 * 6 5 4 8 8 C 1.38671 * 120.39465 * 0.59122 * 7 6 5 9 9 Cl 1.73592 * 119.85546 * 179.70365 * 8 7 6 10 10 C 1.37860 * 120.28170 * 359.67958 * 8 7 6 11 11 C 1.39804 * 119.88890 * 0.02719 * 10 8 7 12 12 C 1.47353 * 120.19068 * 179.97438 * 11 10 8 13 13 O 1.21542 * 119.99655 * 180.02562 * 12 11 10 14 14 O 1.34774 * 120.00276 * 0.02562 * 12 11 10 15 15 C 1.34856 * 116.99900 * 179.97438 * 14 12 11 16 16 H 1.08004 * 120.00441 * 0.02562 * 15 14 12 17 17 C 1.38796 * 120.00173 * 179.97438 * 15 14 12 18 18 N 1.31431 * 119.99800 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00190 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46670 * 90.00431 * 19 17 15 21 21 H 1.48504 * 109.47181 * 210.00205 * 19 17 15 22 22 H 1.48497 * 109.47123 * 330.00344 * 19 17 15 23 23 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 25 25 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 26 26 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 27 27 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 29 29 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 30 30 H 1.07997 * 119.94059 * 359.96515 * 6 5 4 31 31 H 1.07998 * 119.80230 * 180.27337 * 7 6 5 32 32 H 1.08006 * 120.05486 * 180.02562 * 10 8 7 33 33 H 0.96994 * 119.99617 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0847 2.6515 0.0001 6 6 3.3322 3.8164 -0.0064 7 6 3.9597 5.0462 -0.0005 8 6 5.3440 5.1276 -0.0005 9 17 6.1184 6.6812 -0.0009 10 6 6.1078 3.9799 0.0004 11 6 5.4848 2.7284 0.0006 12 6 6.2947 1.4974 0.0010 13 8 5.7493 0.4112 0.0008 14 8 7.6401 1.5759 0.0016 15 6 8.3213 0.4120 0.0024 16 1 7.7869 -0.5265 0.0022 17 6 9.7092 0.4202 0.0025 18 7 10.3596 1.5623 0.0023 19 14 10.6528 -1.1920 0.0030 20 1 10.9030 -1.6194 -1.3970 21 1 11.9492 -1.0066 0.7031 22 1 9.8563 -2.2315 0.7031 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9564 -0.8900 29 1 1.6764 1.9564 0.8900 30 1 2.2537 3.7614 -0.0117 31 1 3.3689 5.9503 -0.0012 32 1 7.1858 4.0475 0.0008 33 1 11.3296 1.5680 0.0028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750462420.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:29 Heat of formation + Delta-G solvation = -126.311075 kcal Electronic energy + Delta-G solvation = -19650.095174 eV Core-core repulsion = 16280.556356 eV Total energy + Delta-G solvation = -3369.538817 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.69178 -40.49324 -38.86165 -37.32639 -37.05167 -34.80205 -34.33144 -32.61495 -30.84569 -27.86052 -27.36837 -25.27935 -23.64294 -22.43982 -21.82806 -19.86892 -19.48146 -18.61266 -17.49958 -17.35521 -16.94455 -16.50316 -16.18676 -16.14443 -15.52752 -15.13412 -15.04426 -14.42817 -14.18949 -13.71818 -13.62575 -13.39822 -13.21271 -12.93551 -12.79292 -12.56200 -12.38921 -12.17939 -12.04599 -12.00656 -11.94421 -11.85650 -11.43838 -11.00598 -10.71111 -10.28783 -9.26529 -8.56314 -6.33302 -0.36005 0.09121 1.09446 1.32620 1.35682 1.50575 1.72813 2.07701 2.11971 2.56211 2.67717 3.01177 3.59960 3.78497 3.92449 3.94517 3.97073 4.19162 4.28316 4.47357 4.52905 4.56658 4.73358 4.80423 4.82575 5.02787 5.06412 5.14451 5.18331 5.19606 5.35370 5.44733 5.80901 6.35821 6.62510 6.88156 7.74459 8.64615 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.011068 B = 0.006042 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.197376 B = 4633.420658 C = 7136.868254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.040 3.960 4 O -0.311 6.311 5 C 0.180 3.820 6 C -0.194 4.194 7 C -0.025 4.025 8 C -0.088 4.088 9 Cl -0.059 7.059 10 C -0.031 4.031 11 C -0.160 4.160 12 C 0.435 3.565 13 O -0.560 6.560 14 O -0.238 6.238 15 C -0.418 4.418 16 H 0.081 0.919 17 C -0.003 4.003 18 N -0.899 5.899 19 Si 1.019 2.981 20 H -0.259 1.259 21 H -0.257 1.257 22 H -0.264 1.264 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.188 0.812 31 H 0.185 0.815 32 H 0.129 0.871 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.128 7.275 -0.028 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C -0.034 4.034 4 O -0.223 6.223 5 C 0.132 3.868 6 C -0.212 4.212 7 C -0.043 4.043 8 C -0.115 4.115 9 Cl -0.030 7.030 10 C -0.051 4.051 11 C -0.162 4.162 12 C 0.284 3.716 13 O -0.458 6.458 14 O -0.147 6.147 15 C -0.494 4.494 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.536 5.536 19 Si 0.838 3.162 20 H -0.183 1.183 21 H -0.181 1.181 22 H -0.188 1.188 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.205 0.795 31 H 0.202 0.798 32 H 0.147 0.853 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.903 7.011 -0.025 19.227 hybrid contribution 0.967 -0.661 -0.001 1.172 sum -16.935 6.350 -0.026 18.087 Atomic orbital electron populations 1.21644 0.91470 1.03214 1.03241 1.21509 0.97920 0.94398 1.02562 1.23394 0.76410 1.00087 1.03477 1.86405 1.23504 1.26148 1.86255 1.19238 0.89708 0.86464 0.91428 1.21503 1.02020 0.89289 1.08407 1.21436 0.91126 0.99507 0.92250 1.20680 0.93737 0.86112 1.10947 1.98355 1.81579 1.25835 1.97250 1.21127 1.00745 0.89624 0.93564 1.18606 0.90991 0.91214 1.15412 1.21381 0.82590 0.89578 0.78041 1.90625 1.73106 1.30870 1.51190 1.83924 1.17560 1.36227 1.76955 1.21459 0.89451 0.83832 1.54665 0.90167 1.26571 0.95590 1.03570 0.94630 1.70068 1.09403 1.27720 1.46409 0.84612 0.77235 0.74786 0.79598 1.18350 1.18128 1.18845 0.91369 0.91130 0.91115 0.92449 0.92461 0.89440 0.89463 0.79525 0.79767 0.85297 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.13 -2.76 6.30 30.60 0.19 -2.57 16 3 C 0.04 0.90 4.74 71.98 0.34 1.24 16 4 O -0.31 -11.33 8.21 -68.84 -0.57 -11.90 16 5 C 0.18 6.31 6.70 22.86 0.15 6.47 16 6 C -0.19 -4.43 9.03 22.34 0.20 -4.22 16 7 C -0.02 -0.53 9.81 22.33 0.22 -0.31 16 8 C -0.09 -2.57 6.31 22.28 0.14 -2.43 16 9 Cl -0.06 -1.55 28.94 -2.72 -0.08 -1.63 16 10 C -0.03 -1.22 9.39 22.56 0.21 -1.01 16 11 C -0.16 -7.05 5.89 -20.02 -0.12 -7.17 16 12 C 0.44 24.63 7.83 70.22 0.55 25.18 16 13 O -0.56 -33.81 14.41 26.71 0.38 -33.43 16 14 O -0.24 -15.00 8.99 10.89 0.10 -14.90 16 15 C -0.42 -26.70 9.65 67.95 0.66 -26.04 16 16 H 0.08 5.20 6.86 -2.91 -0.02 5.18 16 17 C 0.00 -0.19 5.50 84.89 0.47 0.28 16 18 N -0.90 -54.51 13.67 21.63 0.30 -54.21 16 19 Si 1.02 44.85 29.55 68.60 2.03 46.88 16 20 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 23 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.47 7.65 -2.39 -0.02 1.45 16 29 H 0.09 1.47 7.68 -2.39 -0.02 1.45 16 30 H 0.19 2.49 6.30 -2.91 -0.02 2.47 16 31 H 0.19 2.28 8.06 -2.91 -0.02 2.25 16 32 H 0.13 5.68 7.61 -2.91 -0.02 5.66 16 33 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -80.20 309.30 7.02 -73.17 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.13 Total: 7.76 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 3.73 Total: -11.74 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.30 Total: -54.21 kcal Atomic # 8 Polarization: -60.15 SS G_CDS: -0.08 Total: -60.23 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -80.20 7.02 -73.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750462420.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.137 kcal (2) G-P(sol) polarization free energy of solvation -80.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds