Wall clock time and date at job start Tue Mar 31 2020 05:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31337 * 1 3 3 Si 1.86803 * 120.00017 * 2 1 4 4 H 1.48502 * 109.46898 * 269.99811 * 3 2 1 5 5 H 1.48497 * 109.47179 * 29.99263 * 3 2 1 6 6 H 1.48495 * 109.47079 * 149.99378 * 3 2 1 7 7 C 1.39087 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00230 * 187.41153 * 7 2 1 9 9 N 1.36805 * 119.99852 * 7.41435 * 7 2 1 10 10 C 1.34774 * 120.00213 * 43.96205 * 9 7 2 11 11 O 1.21583 * 119.99802 * 4.16347 * 10 9 7 12 12 C 1.47833 * 120.00366 * 184.16083 * 10 9 7 13 13 N 1.32912 * 119.75297 * 353.89536 * 12 10 9 14 14 C 1.31530 * 121.63914 * 179.97438 * 13 12 10 15 15 Cl 1.73597 * 119.52201 * 180.02562 * 14 13 12 16 16 C 1.38829 * 120.94992 * 359.71240 * 14 13 12 17 17 C 1.38435 * 119.40390 * 0.56453 * 16 14 13 18 18 C 1.38946 * 118.48943 * 359.45324 * 17 16 14 19 19 F 1.35097 * 120.49093 * 180.30045 * 18 17 16 20 20 C 1.46503 * 119.99861 * 223.95877 * 9 7 2 21 21 C 1.53000 * 117.49962 * 1.89340 * 20 9 7 22 22 C 1.52995 * 117.50004 * 293.26763 * 20 9 7 23 23 H 0.96998 * 119.99936 * 5.01123 * 1 2 3 24 24 H 1.08008 * 120.29921 * 180.31224 * 16 14 13 25 25 H 1.08001 * 120.75477 * 179.72402 * 17 16 14 26 26 H 1.09003 * 115.54821 * 147.59934 * 20 9 7 27 27 H 1.09000 * 117.49900 * 359.97438 * 21 20 9 28 28 H 1.09003 * 117.49794 * 145.01858 * 21 20 9 29 29 H 1.09009 * 117.49856 * 214.97884 * 22 20 9 30 30 H 1.08999 * 117.50055 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.4949 2.0464 -1.4001 5 1 1.4448 2.6527 0.6999 6 1 3.5448 1.4402 0.7001 7 6 2.0088 -1.2045 0.0005 8 1 3.0820 -1.2084 0.1212 9 7 1.3334 -2.3844 -0.1518 10 6 0.3667 -2.4919 -1.0847 11 8 0.1464 -1.5660 -1.8413 12 6 -0.4258 -3.7356 -1.1882 13 7 -0.1025 -4.7876 -0.4431 14 6 -0.7821 -5.9120 -0.5050 15 17 -0.3120 -7.2518 0.4937 16 6 -1.8739 -6.0406 -1.3529 17 6 -2.2434 -4.9723 -2.1520 18 6 -1.5086 -3.7961 -2.0674 19 9 -1.8374 -2.7265 -2.8244 20 6 1.6609 -3.5311 0.6991 21 6 2.7368 -3.3327 1.7687 22 6 3.0403 -4.1694 0.5242 23 1 -0.4850 0.8368 -0.0734 24 1 -2.4276 -6.9672 -1.3916 25 1 -3.0863 -5.0500 -2.8228 26 1 0.8276 -4.1914 0.9394 27 1 3.2012 -2.3491 1.8390 28 1 2.6114 -3.8624 2.7130 29 1 3.1146 -5.2497 0.6499 30 1 3.7040 -3.7365 -0.2243 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758677733.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:17 Heat of formation + Delta-G solvation = 15.349487 kcal Electronic energy + Delta-G solvation = -20433.090952 eV Core-core repulsion = 16978.527443 eV Total energy + Delta-G solvation = -3454.563508 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.047 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.41745 -40.07147 -38.15441 -36.53348 -35.92083 -32.94467 -32.61701 -30.93776 -30.23112 -25.71608 -24.16845 -23.04956 -21.59130 -21.07667 -20.09203 -17.66676 -17.28194 -16.92453 -16.06549 -15.70429 -15.45642 -14.69956 -14.35773 -13.91664 -13.85752 -13.69730 -13.21478 -13.06539 -12.90718 -12.19443 -11.89025 -11.42489 -11.25563 -11.18539 -10.99564 -10.85348 -10.65005 -10.30848 -9.96597 -9.91170 -9.78372 -8.96633 -8.80747 -8.49410 -8.12453 -7.10015 -6.17396 -3.99050 0.79993 1.08723 1.84529 3.25177 3.31717 3.33167 3.38259 4.03740 4.27163 4.49800 4.56960 4.64646 4.85482 4.92760 5.07187 5.27832 5.38936 5.58010 5.78041 5.85776 5.95208 5.97873 6.24474 6.37882 6.55823 6.66492 6.97838 7.18722 7.47342 7.70969 8.12942 8.90047 9.03341 9.48585 10.16924 10.83597 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.019451 B = 0.007274 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.143051 B = 3848.365733 C = 5065.408333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.054 3.946 3 Si 0.919 3.081 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.320 4.320 8 H 0.087 0.913 9 N -0.395 5.395 10 C 0.503 3.497 11 O -0.510 6.510 12 C 0.108 3.892 13 N -0.429 5.429 14 C 0.154 3.846 15 Cl -0.035 7.035 16 C -0.138 4.138 17 C -0.108 4.108 18 C 0.094 3.906 19 F -0.102 7.102 20 C 0.073 3.927 21 C -0.187 4.187 22 C -0.199 4.199 23 H 0.269 0.731 24 H 0.149 0.851 25 H 0.155 0.845 26 H 0.150 0.850 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.051 -12.541 -0.011 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.158 4.158 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.448 4.448 8 H 0.104 0.896 9 N -0.113 5.113 10 C 0.290 3.710 11 O -0.387 6.387 12 C -0.032 4.032 13 N -0.143 5.143 14 C -0.012 4.012 15 Cl -0.007 7.007 16 C -0.160 4.160 17 C -0.134 4.134 18 C 0.071 3.929 19 F -0.080 7.080 20 C -0.033 4.033 21 C -0.225 4.225 22 C -0.238 4.238 23 H 0.079 0.921 24 H 0.167 0.833 25 H 0.172 0.828 26 H 0.166 0.834 27 H 0.120 0.880 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.589 -11.884 0.273 12.166 hybrid contribution -0.354 0.636 -0.472 0.868 sum -2.943 -11.248 -0.199 11.628 Atomic orbital electron populations 1.69836 1.06474 1.28119 1.40214 1.25394 0.95133 0.99667 0.95590 0.86064 0.79220 0.81678 0.78461 1.20209 1.20952 1.19529 1.19174 0.91553 0.82458 1.51583 0.89555 1.42662 1.32209 1.09427 1.27024 1.17062 0.85141 0.84613 0.84169 1.90694 1.68130 1.37455 1.42371 1.22401 0.94065 0.94762 0.91993 1.67716 1.28078 0.98261 1.20273 1.21839 0.94013 0.90423 0.94925 1.98387 1.92335 1.41459 1.68498 1.21640 0.97217 1.00335 0.96786 1.21538 1.00480 0.91211 1.00175 1.18643 0.95677 0.85129 0.93466 1.91616 1.91041 1.52969 1.72347 1.22812 0.92745 0.92085 0.95658 1.23154 1.05126 1.01661 0.92576 1.23158 1.01925 0.97893 1.00808 0.92056 0.83335 0.82750 0.83368 0.88019 0.89855 0.89810 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -23.91 11.04 55.50 0.61 -23.30 16 2 C 0.05 1.49 4.73 -17.45 -0.08 1.41 16 3 Si 0.92 21.35 29.56 -169.99 -5.03 16.32 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.32 -8.72 8.01 -15.02 -0.12 -8.84 16 8 H 0.09 2.25 7.13 -52.49 -0.37 1.88 16 9 N -0.40 -10.28 2.85 -108.80 -0.31 -10.59 16 10 C 0.50 13.44 6.78 -12.34 -0.08 13.36 16 11 O -0.51 -15.34 12.88 5.29 0.07 -15.27 16 12 C 0.11 2.36 6.68 -82.96 -0.55 1.80 16 13 N -0.43 -8.16 5.92 -6.91 -0.04 -8.20 16 14 C 0.15 2.35 7.27 -17.46 -0.13 2.22 16 15 Cl -0.04 -0.45 29.10 -51.86 -1.51 -1.96 16 16 C -0.14 -1.73 9.88 -39.29 -0.39 -2.12 16 17 C -0.11 -1.48 10.16 -39.25 -0.40 -1.88 16 18 C 0.09 1.81 7.31 -38.81 -0.28 1.53 16 19 F -0.10 -2.19 15.57 2.25 0.04 -2.15 16 20 C 0.07 1.57 5.23 -67.93 -0.36 1.21 16 21 C -0.19 -3.59 9.79 -26.73 -0.26 -3.85 16 22 C -0.20 -3.72 10.37 -26.73 -0.28 -4.00 16 23 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.15 1.29 8.06 -52.48 -0.42 0.86 16 25 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 26 H 0.15 3.13 5.12 -55.19 -0.28 2.85 16 27 H 0.10 2.08 6.68 -51.93 -0.35 1.73 16 28 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 30 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 LS Contribution 282.24 15.07 4.25 4.25 Total: -1.00 -31.94 282.24 -7.10 -39.04 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -2.25 Total: 1.01 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -2.93 Total: 0.84 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.26 Total: -42.08 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.07 Total: -15.27 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.51 Total: -1.96 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.94 -7.10 -39.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758677733.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.386 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds