Wall clock time and date at job start Tue Mar 31 2020 05:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99870 * 2 1 4 4 H 1.48507 * 109.46991 * 269.99943 * 3 2 1 5 5 H 1.48494 * 109.47189 * 29.99981 * 3 2 1 6 6 H 1.48500 * 109.46877 * 150.00380 * 3 2 1 7 7 C 1.37873 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99472 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00433 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47197 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47340 * 179.97438 * 10 9 7 12 12 O 1.45199 * 109.47325 * 179.97438 * 11 10 9 13 13 C 1.34749 * 117.00129 * 180.02562 * 12 11 10 14 14 O 1.21509 * 119.99831 * 359.97438 * 13 12 11 15 15 C 1.47466 * 119.99984 * 180.02562 * 13 12 11 16 16 C 1.39793 * 120.08897 * 359.97438 * 15 13 12 17 17 C 1.37686 * 119.92445 * 179.74403 * 16 15 13 18 18 C 1.38986 * 120.10906 * 0.53236 * 17 16 15 19 19 O 1.35725 * 119.91276 * 179.76414 * 18 17 16 20 20 C 1.39091 * 120.18107 * 359.48715 * 18 17 16 21 21 Cl 1.73597 * 119.96841 * 180.25440 * 20 18 17 22 22 C 1.37802 * 120.06800 * 0.23282 * 20 18 17 23 23 H 0.97003 * 119.99862 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46973 * 59.99935 * 9 7 2 25 25 H 1.09002 * 109.46684 * 299.99571 * 9 7 2 26 26 H 1.09004 * 109.47219 * 59.99554 * 10 9 7 27 27 H 1.09002 * 109.47472 * 300.00100 * 10 9 7 28 28 H 1.08999 * 109.46606 * 59.99986 * 11 10 9 29 29 H 1.08994 * 109.47060 * 299.99996 * 11 10 9 30 30 H 1.07994 * 120.04077 * 0.02562 * 16 15 13 31 31 H 1.08006 * 119.94690 * 180.27429 * 17 16 15 32 32 H 0.96696 * 114.00142 * 269.72472 * 19 18 17 33 33 H 1.07999 * 120.05277 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 8 2.4237 -6.0907 -0.0005 13 6 1.9087 -7.3359 -0.0006 14 8 0.7041 -7.4951 0.0003 15 6 2.8070 -8.5054 -0.0006 16 6 4.1932 -8.3244 -0.0011 17 6 5.0288 -9.4186 0.0042 18 6 4.4964 -10.7025 -0.0012 19 8 5.3238 -11.7783 -0.0007 20 6 3.1179 -10.8878 -0.0011 21 17 2.4589 -12.4938 -0.0011 22 6 2.2747 -9.7979 -0.0006 23 1 -0.4850 0.8401 -0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8898 26 1 2.8719 -3.6043 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 0.8533 -5.0450 -0.8897 29 1 0.8539 -5.0446 0.8903 30 1 4.6082 -7.3273 -0.0011 31 1 6.0998 -9.2792 0.0083 32 1 5.5636 -12.0904 -0.8840 33 1 1.2044 -9.9421 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762830033.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:30 Heat of formation + Delta-G solvation = -125.883115 kcal Electronic energy + Delta-G solvation = -18620.113794 eV Core-core repulsion = 15250.593534 eV Total energy + Delta-G solvation = -3369.520260 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74584 -39.71911 -37.27552 -36.86765 -36.37681 -34.03363 -31.82368 -31.38637 -30.61247 -27.17120 -24.63934 -23.34368 -23.00868 -21.07157 -20.38580 -19.07757 -18.10971 -17.12994 -16.39301 -16.35153 -16.06825 -15.85116 -15.28691 -14.49402 -14.33275 -14.21830 -13.79527 -13.32621 -13.00571 -12.59929 -12.26910 -12.21645 -11.90417 -11.80062 -11.60094 -11.04208 -10.99887 -10.74808 -10.68484 -10.50616 -10.45164 -9.77304 -9.55376 -9.47039 -9.19517 -9.14331 -8.41186 -6.05912 -4.09153 0.13169 0.66638 1.62087 2.23774 2.72677 3.20238 3.29343 3.35732 3.38953 3.52737 4.27627 4.39973 4.52399 4.65936 4.73301 4.98827 5.28585 5.30171 5.47040 5.52614 5.56851 5.65960 5.78084 5.95922 6.04282 6.38403 6.49138 6.75701 6.93375 7.00547 7.57161 7.67889 7.77272 7.92167 8.32845 8.97074 9.55338 11.05539 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.043872 B = 0.002532 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.067973 B =11056.466899 C =11666.225084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.352 6.352 13 C 0.505 3.495 14 O -0.504 6.504 15 C -0.117 4.117 16 C -0.039 4.039 17 C -0.146 4.146 18 C 0.149 3.851 19 O -0.485 6.485 20 C -0.079 4.079 21 Cl -0.049 7.049 22 C -0.034 4.034 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.398 0.602 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.891 -24.034 -1.700 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.004 4.004 12 O -0.268 6.268 13 C 0.349 3.651 14 O -0.393 6.393 15 C -0.119 4.119 16 C -0.057 4.057 17 C -0.165 4.165 18 C 0.103 3.897 19 O -0.297 6.297 20 C -0.107 4.107 21 Cl -0.020 7.020 22 C -0.053 4.053 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.172 0.828 31 H 0.166 0.834 32 H 0.256 0.744 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.272 -24.009 -1.091 25.760 hybrid contribution 0.191 0.741 -0.493 0.910 sum 9.463 -23.268 -1.584 25.169 Atomic orbital electron populations 1.69964 1.06099 1.26805 1.50467 1.25031 0.94881 0.99388 0.95175 0.86542 0.79803 0.83217 0.78143 1.20603 1.21181 1.19806 1.21162 0.93112 0.90655 1.51096 0.92420 1.19055 0.93838 0.90703 0.97741 1.21779 0.99982 0.90851 1.02031 1.23585 0.91163 0.83210 1.02429 1.86531 1.42476 1.14644 1.83149 1.20826 0.86932 0.83897 0.73459 1.90857 1.15990 1.86992 1.45508 1.19157 0.93344 0.91074 1.08311 1.21581 0.91586 1.00419 0.92131 1.21416 1.01523 0.90450 1.03066 1.18480 0.86861 0.87386 0.97019 1.84776 1.65742 1.45244 1.33918 1.21179 0.92675 0.87518 1.09289 1.98388 1.85597 1.21118 1.96932 1.21087 1.01184 0.89125 0.93889 0.92858 0.96192 0.96187 0.92057 0.92065 0.91265 0.91249 0.82820 0.83369 0.74373 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.18 5.53 -26.73 -0.15 -2.33 16 11 C 0.07 1.23 5.48 37.16 0.20 1.43 16 12 O -0.35 -5.57 9.46 -40.63 -0.38 -5.95 16 13 C 0.50 7.57 7.89 34.49 0.27 7.84 16 14 O -0.50 -8.85 16.13 -19.27 -0.31 -9.16 16 15 C -0.12 -1.36 5.87 -104.98 -0.62 -1.98 16 16 C -0.04 -0.36 9.61 -39.20 -0.38 -0.74 16 17 C -0.15 -1.11 9.97 -39.51 -0.39 -1.50 16 18 C 0.15 1.22 6.71 -38.99 -0.26 0.96 16 19 O -0.49 -3.27 12.94 -18.88 -0.24 -3.51 16 20 C -0.08 -0.75 6.32 -39.42 -0.25 -1.00 16 21 Cl -0.05 -0.44 28.49 -51.86 -1.48 -1.92 16 22 C -0.03 -0.36 9.36 -39.16 -0.37 -0.73 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.15 1.29 7.60 -52.49 -0.40 0.89 16 31 H 0.15 0.78 8.06 -52.48 -0.42 0.35 16 32 H 0.40 0.84 9.06 45.56 0.41 1.25 16 33 H 0.15 1.64 7.64 -52.49 -0.40 1.23 16 LS Contribution 314.70 15.07 4.74 4.74 Total: -1.00 -32.13 314.70 -7.33 -39.47 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: -2.89 Total: -3.23 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.49 Total: -10.87 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.74 Total: -25.88 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.94 Total: -18.62 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.48 Total: -1.92 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.13 -7.33 -39.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762830033.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.418 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds