Wall clock time and date at job start Tue Mar 31 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38142 * 119.97692 * 2 1 4 4 C 1.38726 * 119.95457 * 180.29581 * 3 2 1 5 5 O 1.35925 * 120.04403 * 179.74864 * 4 3 2 6 6 C 1.42900 * 116.99645 * 359.97438 * 5 4 3 7 7 C 1.50707 * 109.46810 * 179.97438 * 6 5 4 8 8 O 1.21208 * 120.00213 * 0.02562 * 7 6 5 9 9 O 1.34312 * 119.99981 * 179.97438 * 7 6 5 10 10 C 1.34910 * 117.00080 * 179.97438 * 9 7 6 11 11 H 1.08001 * 120.00399 * 0.02562 * 10 9 7 12 12 C 1.38758 * 120.00361 * 180.02562 * 10 9 7 13 13 N 1.31449 * 119.99592 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00322 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46794 * 90.00458 * 14 12 10 16 16 H 1.48500 * 109.46910 * 209.99981 * 14 12 10 17 17 H 1.48496 * 109.47100 * 330.00485 * 14 12 10 18 18 C 1.38722 * 119.91383 * 359.73086 * 4 3 2 19 19 C 1.38142 * 119.95901 * 359.97438 * 18 4 3 20 20 C 1.50697 * 119.97923 * 180.02562 * 19 18 4 21 21 C 1.38363 * 119.97691 * 179.75113 * 2 1 3 22 22 Cl 1.73599 * 119.96106 * 359.97438 * 21 2 1 23 23 H 1.09003 * 109.47073 * 270.25069 * 1 2 3 24 24 H 1.08998 * 109.47040 * 30.25094 * 1 2 3 25 25 H 1.09001 * 109.46915 * 150.24861 * 1 2 3 26 26 H 1.07994 * 120.02804 * 0.03075 * 3 2 1 27 27 H 1.09002 * 109.47373 * 299.99517 * 6 5 4 28 28 H 1.08999 * 109.47109 * 60.00061 * 6 5 4 29 29 H 0.96996 * 119.99985 * 179.97438 * 13 12 10 30 30 H 1.08006 * 120.01874 * 179.97438 * 18 4 3 31 31 H 1.09004 * 109.47074 * 269.97940 * 20 19 18 32 32 H 1.08997 * 109.47165 * 29.97862 * 20 19 18 33 33 H 1.08995 * 109.47348 * 149.97511 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1966 0.0000 4 6 3.5845 1.1961 -0.0062 5 8 4.2655 2.3724 -0.0114 6 6 3.4885 3.5718 -0.0106 7 6 4.4079 4.7659 -0.0162 8 8 5.6093 4.6057 -0.0208 9 8 3.8959 6.0076 -0.0170 10 6 4.7737 7.0320 -0.0215 11 1 5.8354 6.8336 -0.0247 12 6 4.3128 8.3408 -0.0221 13 7 3.0207 8.5825 -0.0178 14 14 5.5282 9.7593 -0.0291 15 1 5.8450 10.1327 -1.4310 16 1 4.9322 10.9253 0.6711 17 1 6.7736 9.3474 0.6669 18 6 4.2758 -0.0066 -0.0068 19 6 3.5820 -1.2011 -0.0006 20 6 4.3326 -2.5079 -0.0006 21 6 2.1983 -1.1985 0.0052 22 17 1.3287 -2.7010 0.0124 23 1 -0.3633 0.0045 1.0277 24 1 -0.3633 0.8877 -0.5177 25 1 -0.3633 -0.8922 -0.5100 26 1 1.6574 2.1319 0.0005 27 1 2.8561 3.5956 -0.8981 28 1 2.8633 3.5991 0.8819 29 1 2.6984 9.4973 -0.0178 30 1 5.3559 -0.0090 -0.0120 31 1 4.5086 -2.8258 -1.0283 32 1 5.2877 -2.3783 0.5083 33 1 3.7444 -3.2648 0.5182 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767528587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:19 Heat of formation + Delta-G solvation = -106.913844 kcal Electronic energy + Delta-G solvation = -19143.124460 eV Core-core repulsion = 15774.426770 eV Total energy + Delta-G solvation = -3368.697690 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.43157 -39.09651 -37.92219 -36.31505 -35.14701 -33.87814 -32.24596 -31.04772 -28.70313 -27.37936 -26.85716 -25.14393 -21.99701 -21.38378 -20.13454 -17.96461 -17.56911 -16.93973 -16.52970 -16.15148 -15.96443 -14.70904 -14.65212 -14.41174 -14.09816 -14.00732 -13.42302 -13.38885 -13.14787 -12.93288 -12.34756 -12.21068 -12.09745 -11.91035 -11.82298 -11.65689 -11.34888 -11.21482 -10.67914 -10.60002 -10.47713 -10.38435 -9.92091 -9.12254 -8.85941 -8.66223 -8.14221 -6.49761 -4.18382 1.07402 1.13427 2.07282 2.82528 3.04482 3.17062 3.24170 3.37307 3.45152 3.98072 4.44676 4.48011 4.62888 4.85923 5.01660 5.09734 5.15246 5.26483 5.29884 5.41273 5.43899 5.45779 5.46775 5.59406 5.74470 5.97223 6.03951 6.18342 6.23627 6.40040 6.56704 7.30206 7.37619 7.85068 8.58665 8.98594 9.70181 10.67878 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.040365 B = 0.003069 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.500478 B = 9122.431005 C = 9790.177624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.030 4.030 3 C -0.209 4.209 4 C 0.154 3.846 5 O -0.286 6.286 6 C 0.078 3.922 7 C 0.397 3.603 8 O -0.534 6.534 9 O -0.209 6.209 10 C -0.383 4.383 11 H 0.098 0.902 12 C 0.043 3.957 13 N -0.864 5.864 14 Si 0.947 3.053 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.266 1.266 18 C -0.149 4.149 19 C -0.033 4.033 20 C -0.118 4.118 21 C -0.084 4.084 22 Cl -0.074 7.074 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.141 0.859 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.271 0.729 30 H 0.141 0.859 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.144 -19.130 0.056 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.030 4.030 3 C -0.228 4.228 4 C 0.108 3.892 5 O -0.198 6.198 6 C 0.002 3.998 7 C 0.242 3.758 8 O -0.430 6.430 9 O -0.116 6.116 10 C -0.459 4.459 11 H 0.116 0.884 12 C -0.161 4.161 13 N -0.500 5.500 14 Si 0.771 3.229 15 H -0.198 1.198 16 H -0.202 1.202 17 H -0.190 1.190 18 C -0.168 4.168 19 C -0.034 4.034 20 C -0.175 4.175 21 C -0.110 4.110 22 Cl -0.046 7.046 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.159 0.841 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.159 0.841 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.849 -19.050 0.059 19.657 hybrid contribution 0.199 0.734 -0.012 0.761 sum -4.650 -18.316 0.047 18.897 Atomic orbital electron populations 1.20906 0.90106 1.03616 1.03119 1.19489 0.96581 0.90646 0.96332 1.21174 0.92946 0.98810 1.09889 1.19095 0.90408 0.86176 0.93559 1.86150 1.34677 1.11471 1.87479 1.21837 0.92614 0.81289 1.04105 1.22370 0.87857 0.85378 0.80173 1.90606 1.16442 1.86518 1.49407 1.83826 1.39912 1.12114 1.75778 1.21269 0.89705 0.82127 1.52820 0.88410 1.25365 0.97120 0.97634 0.95975 1.69989 1.12607 1.21335 1.46119 0.85622 0.79404 0.79053 0.78834 1.19769 1.20232 1.18983 1.20216 1.00738 0.88380 1.07489 1.19459 0.91333 0.95605 0.97013 1.20875 1.00138 0.93368 1.03085 1.20443 0.91493 0.86441 1.12641 1.98316 1.76509 1.32532 1.97212 0.90396 0.90788 0.90715 0.84126 0.88741 0.88746 0.91907 0.84129 0.90430 0.90812 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.61 36.01 0.35 -0.77 16 2 C -0.03 -0.35 5.88 -104.61 -0.62 -0.96 16 3 C -0.21 -2.72 8.69 -39.44 -0.34 -3.06 16 4 C 0.15 2.30 6.69 -39.22 -0.26 2.04 16 5 O -0.29 -5.20 9.67 -39.42 -0.38 -5.58 16 6 C 0.08 1.40 5.33 36.01 0.19 1.60 16 7 C 0.40 9.79 7.98 36.01 0.29 10.08 16 8 O -0.53 -14.75 15.74 -25.78 -0.41 -15.16 16 9 O -0.21 -5.85 9.75 -20.68 -0.20 -6.05 16 10 C -0.38 -11.20 9.64 30.92 0.30 -10.90 16 11 H 0.10 2.88 6.86 -52.49 -0.36 2.52 16 12 C 0.04 1.20 5.49 -17.52 -0.10 1.11 16 13 N -0.86 -24.75 13.67 55.48 0.76 -23.99 16 14 Si 0.95 20.96 29.55 -169.99 -5.02 15.94 16 15 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 16 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 C -0.15 -1.98 9.64 -39.44 -0.38 -2.36 16 19 C -0.03 -0.39 5.88 -104.61 -0.62 -1.00 16 20 C -0.12 -1.04 9.61 36.00 0.35 -0.69 16 21 C -0.08 -0.98 6.31 -39.49 -0.25 -1.23 16 22 Cl -0.07 -0.75 25.62 -51.86 -1.33 -2.08 16 23 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 25 H 0.07 0.65 6.90 -51.93 -0.36 0.29 16 26 H 0.14 1.64 6.30 -52.49 -0.33 1.31 16 27 H 0.09 1.47 7.66 -51.93 -0.40 1.07 16 28 H 0.09 1.47 7.66 -51.93 -0.40 1.07 16 29 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 33 H 0.07 0.62 6.90 -51.93 -0.36 0.26 16 LS Contribution 307.17 15.07 4.63 4.63 Total: -1.00 -32.92 307.17 -6.49 -39.41 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -3.45 Total: -0.98 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -1.09 Total: -6.15 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.76 Total: -23.99 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.99 Total: -26.78 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.33 Total: -2.08 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.92 -6.49 -39.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767528587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.501 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds