Wall clock time and date at job start Tue Mar 31 2020 05:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86794 * 119.99872 * 2 1 4 4 H 1.48500 * 109.47357 * 274.98382 * 3 2 1 5 5 H 1.48504 * 109.47274 * 34.98131 * 3 2 1 6 6 H 1.48505 * 109.47403 * 154.98243 * 3 2 1 7 7 C 1.40047 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00014 * 186.15360 * 7 2 1 9 9 C 1.46373 * 119.99932 * 6.15026 * 7 2 1 10 10 O 1.21688 * 120.00327 * 353.94127 * 9 7 2 11 11 N 1.34774 * 119.99943 * 173.93942 * 9 7 2 12 12 C 1.46504 * 120.00071 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47301 * 179.97438 * 12 11 9 14 14 C 1.38237 * 120.00762 * 104.72172 * 13 12 11 15 15 C 1.38218 * 120.01385 * 179.76870 * 14 13 12 16 16 N 1.48029 * 119.98664 * 180.25292 * 15 14 13 17 17 O 1.21798 * 119.99510 * 180.25511 * 16 15 14 18 18 O 1.21792 * 119.99666 * 0.25876 * 16 15 14 19 19 C 1.38263 * 120.02464 * 0.51385 * 15 14 13 20 20 C 1.38187 * 120.01473 * 359.73847 * 19 15 14 21 21 C 1.38332 * 120.00767 * 285.00434 * 13 12 11 22 22 Cl 1.73600 * 120.01341 * 359.97438 * 21 13 12 23 23 H 0.96997 * 120.00368 * 0.02562 * 1 2 3 24 24 H 0.97003 * 120.00327 * 359.97438 * 11 9 7 25 25 H 1.08997 * 109.47139 * 299.99928 * 12 11 9 26 26 H 1.09000 * 109.47208 * 60.00160 * 12 11 9 27 27 H 1.08002 * 119.98944 * 0.02562 * 14 13 12 28 28 H 1.08003 * 119.99118 * 179.72301 * 19 15 14 29 29 H 1.07997 * 120.00263 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1073 -1.3948 5 1 1.4947 2.6200 0.8027 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0823 -1.2154 0.1008 9 6 1.2815 -2.4769 -0.1347 10 8 0.0646 -2.4829 -0.1367 11 7 1.9612 -3.6342 -0.2571 12 6 1.2351 -4.8994 -0.3930 13 6 2.2200 -6.0336 -0.5131 14 6 2.4404 -6.8745 0.5617 15 6 3.3403 -7.9177 0.4502 16 7 3.5716 -8.8213 1.5997 17 8 4.3680 -9.7378 1.5031 18 8 2.9656 -8.6482 2.6418 19 6 4.0284 -8.1144 -0.7328 20 6 3.8128 -7.2712 -1.8062 21 6 2.9082 -6.2298 -1.6969 22 17 2.6370 -5.1701 -3.0449 23 1 -0.4850 0.8400 -0.0004 24 1 2.9312 -3.6295 -0.2559 25 1 0.6074 -5.0541 0.4846 26 1 0.6100 -4.8655 -1.2853 27 1 1.9063 -6.7189 1.4874 28 1 4.7347 -8.9270 -0.8179 29 1 4.3507 -7.4247 -2.7301 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773307305.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:10 Heat of formation + Delta-G solvation = -25.417122 kcal Electronic energy + Delta-G solvation = -19088.352661 eV Core-core repulsion = 15619.648590 eV Total energy + Delta-G solvation = -3468.704071 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.33754 -40.00135 -37.34743 -36.80498 -36.71058 -34.17734 -32.52580 -31.98150 -31.20433 -27.18048 -26.67160 -25.23858 -23.06507 -21.93539 -19.90161 -19.11885 -18.82201 -17.67888 -17.40804 -17.16726 -16.23577 -15.46082 -15.04193 -14.67821 -14.26276 -13.72968 -13.51799 -13.37101 -12.93774 -12.39600 -12.03109 -11.96912 -11.73348 -11.56084 -11.33505 -11.27604 -11.24057 -11.03663 -10.95579 -10.55117 -10.29652 -9.70678 -9.47762 -8.92759 -7.73491 -7.71410 -6.28406 -4.72883 -0.45117 0.53358 1.05475 1.17056 1.73310 2.82339 3.08777 3.16602 3.19844 3.96463 4.05555 4.10296 4.36917 4.45913 4.50072 4.76950 4.91033 5.14566 5.25489 5.30964 5.46456 5.67657 5.78489 6.11493 6.17888 6.22174 7.35887 7.47991 7.73827 7.89547 8.21578 8.94109 9.36308 10.48741 10.66652 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.021638 B = 0.004252 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.702040 B = 6583.653475 C = 7217.503905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.558 3.442 10 O -0.578 6.578 11 N -0.760 5.760 12 C 0.167 3.833 13 C -0.078 4.078 14 C -0.029 4.029 15 C -0.046 4.046 16 N 0.030 4.970 17 O -0.163 6.163 18 O -0.155 6.155 19 C -0.047 4.047 20 C -0.113 4.113 21 C 0.019 3.981 22 Cl -0.020 7.020 23 H 0.269 0.731 24 H 0.381 0.619 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.164 0.836 28 H 0.160 0.840 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.461 -13.707 -4.534 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.362 3.638 10 O -0.460 6.460 11 N -0.417 5.417 12 C 0.043 3.957 13 C -0.081 4.081 14 C -0.048 4.048 15 C -0.130 4.130 16 N 0.550 4.450 17 O -0.378 6.378 18 O -0.372 6.372 19 C -0.067 4.067 20 C -0.132 4.132 21 C -0.009 4.009 22 Cl 0.010 6.990 23 H 0.080 0.920 24 H 0.212 0.788 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.182 0.818 28 H 0.178 0.822 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.213 -13.060 -5.210 15.804 hybrid contribution 1.020 0.562 0.149 1.174 sum 8.234 -12.499 -5.061 15.799 Atomic orbital electron populations 1.70013 1.07074 1.27434 1.34921 1.25698 0.94618 1.00321 0.92570 0.86352 0.80254 0.81422 0.78716 1.19783 1.20377 1.18861 1.20836 0.94106 0.89317 1.53759 0.91356 1.18231 0.87125 0.82025 0.76395 1.90615 1.14020 1.86030 1.55344 1.46205 1.08523 1.04604 1.82337 1.19884 0.91502 0.81601 1.02760 1.20191 0.98757 0.98187 0.90915 1.21016 0.93714 0.90040 1.00059 1.21151 1.06381 0.97033 0.88389 1.43554 0.98947 1.00463 1.02019 1.94524 1.30464 1.23439 1.89365 1.94574 1.48091 1.77502 1.16993 1.20948 0.97027 0.99109 0.89602 1.21083 0.98553 0.93756 0.99801 1.21418 0.96011 0.92840 0.90604 1.98466 1.94842 1.63405 1.42283 0.91993 0.78795 0.91279 0.90827 0.81845 0.82231 0.82525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.38 11.85 55.55 0.66 -21.72 15 2 C 0.09 2.39 5.49 -17.37 -0.10 2.29 15 3 Si 0.91 19.66 29.56 -169.99 -5.03 14.63 15 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 15 7 C -0.54 -14.78 9.53 -35.63 -0.34 -15.12 15 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 15 9 C 0.56 15.03 7.74 -12.99 -0.10 14.93 15 10 O -0.58 -17.90 15.05 5.20 0.08 -17.82 15 11 N -0.76 -15.65 5.44 -62.90 -0.34 -15.99 15 12 C 0.17 2.87 5.13 -5.19 -0.03 2.85 15 13 C -0.08 -1.03 5.25 -104.59 -0.55 -1.58 15 14 C -0.03 -0.35 9.18 -39.59 -0.36 -0.71 15 15 C -0.05 -0.54 6.85 -79.94 -0.55 -1.09 15 16 N 0.03 0.41 4.45 33.97 0.15 0.56 15 17 O -0.16 -2.18 18.45 -29.46 -0.54 -2.73 15 18 O -0.15 -2.25 18.45 -29.46 -0.54 -2.79 15 19 C -0.05 -0.43 9.55 -39.59 -0.38 -0.81 15 20 C -0.11 -0.99 9.83 -39.55 -0.39 -1.37 15 21 C 0.02 0.22 6.31 -39.50 -0.25 -0.03 15 22 Cl -0.02 -0.25 27.55 -51.86 -1.43 -1.68 15 23 H 0.27 7.14 8.29 -40.82 -0.34 6.80 15 24 H 0.38 7.03 8.44 -40.82 -0.34 6.69 15 25 H 0.07 1.22 7.96 -51.93 -0.41 0.81 15 26 H 0.07 1.34 7.58 -51.93 -0.39 0.95 15 27 H 0.16 1.94 7.56 -52.49 -0.40 1.54 15 28 H 0.16 1.11 7.61 -52.48 -0.40 0.71 15 29 H 0.16 0.93 8.06 -52.49 -0.42 0.50 15 LS Contribution 290.36 15.07 4.38 4.38 Total: -1.00 -32.97 290.36 -7.57 -40.54 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -1.92 Total: 3.25 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -3.04 Total: -0.63 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.47 Total: -37.15 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -1.01 Total: -23.34 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.43 Total: -1.68 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.97 -7.57 -40.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773307305.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.124 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds