Wall clock time and date at job start Tue Mar 31 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00290 * 2 1 4 4 H 1.48504 * 109.46964 * 270.00075 * 3 2 1 5 5 H 1.48502 * 109.46957 * 29.99562 * 3 2 1 6 6 H 1.48497 * 109.47160 * 149.99854 * 3 2 1 7 7 C 1.37882 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99910 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00005 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.46913 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99590 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00423 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99566 * 180.02562 * 11 10 9 14 14 O 1.45202 * 109.46859 * 180.02562 * 13 11 10 15 15 C 1.34230 * 116.99836 * 180.02562 * 14 13 11 16 16 O 1.20833 * 119.99930 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00262 * 180.27336 * 15 14 13 18 18 C 1.50693 * 109.47486 * 179.72204 * 17 15 14 19 19 C 1.33642 * 126.04087 * 89.99652 * 18 17 15 20 20 N 1.31779 * 114.50174 * 179.97438 * 19 18 17 21 21 C 1.29029 * 117.12665 * 0.02562 * 20 19 18 22 22 S 1.70979 * 110.16427 * 359.71885 * 21 20 19 23 23 H 0.97002 * 119.99857 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47609 * 59.99693 * 9 7 2 25 25 H 1.09004 * 109.46762 * 299.99307 * 9 7 2 26 26 H 0.97001 * 119.99586 * 0.02562 * 10 9 7 27 27 H 1.08998 * 109.47259 * 60.00127 * 13 11 10 28 28 H 1.09004 * 109.46840 * 299.99907 * 13 11 10 29 29 H 1.09004 * 109.46801 * 299.72165 * 17 15 14 30 30 H 1.09000 * 109.47461 * 59.71633 * 17 15 14 31 31 H 1.07999 * 122.74776 * 0.02562 * 19 18 17 32 32 H 1.07993 * 124.92003 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 5.3249 -2.8216 0.0024 12 8 6.1130 -1.8999 0.0021 13 6 5.8272 -4.2425 0.0030 14 8 7.2792 -4.2424 0.0036 15 6 7.8886 -5.4385 0.0037 16 8 7.2304 -6.4518 0.0036 17 6 9.3934 -5.5174 0.0106 18 6 9.8207 -6.9625 0.0160 19 6 10.0484 -7.7192 -1.0617 20 7 10.4138 -8.9566 -0.7934 21 6 10.5065 -9.2860 0.4506 22 16 10.1155 -7.9509 1.4446 23 1 -0.4850 0.8401 0.0004 24 1 3.8746 -0.6800 0.8911 25 1 3.8751 -0.6805 -0.8890 26 1 3.3694 -3.3126 0.0021 27 1 5.4639 -4.7566 -0.8868 28 1 5.4638 -4.7559 0.8932 29 1 9.7871 -5.0255 -0.8789 30 1 9.7793 -5.0211 0.9010 31 1 9.9424 -7.3469 -2.0699 32 1 10.7939 -10.2624 0.8118 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782362978.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:08 Heat of formation + Delta-G solvation = -73.599601 kcal Electronic energy + Delta-G solvation = -18660.396666 eV Core-core repulsion = 15327.480047 eV Total energy + Delta-G solvation = -3332.916619 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.84237 -39.87388 -38.90668 -36.57692 -34.42127 -33.39319 -32.46490 -29.76824 -28.39075 -27.04448 -25.05563 -22.36581 -21.48529 -20.38426 -20.17468 -18.50979 -18.04445 -17.57943 -16.92707 -16.58490 -15.88672 -15.71173 -15.12090 -14.92081 -14.54133 -14.31383 -14.06660 -13.71394 -13.35903 -13.17211 -12.75908 -12.57016 -12.40096 -12.10995 -11.62661 -11.10374 -10.89993 -10.83908 -10.79292 -10.03618 -10.02989 -9.68952 -9.57529 -9.41044 -9.32178 -8.84871 -8.31577 -6.26841 -4.30157 0.25737 0.95438 1.34991 1.93572 2.19101 2.58581 2.97162 3.23111 3.30111 3.37516 3.81253 3.91746 4.20802 4.28325 4.56140 4.65065 4.87297 4.96718 5.04164 5.07131 5.11066 5.16856 5.26958 5.74162 6.16602 6.69093 6.97130 7.04470 7.28186 7.30819 7.48229 8.00779 8.37385 8.63695 8.75820 9.31998 10.84900 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.055182 B = 0.002542 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.292506 B =11011.593353 C =11192.820647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.699 5.699 11 C 0.502 3.498 12 O -0.537 6.537 13 C 0.050 3.950 14 O -0.328 6.328 15 C 0.460 3.540 16 O -0.499 6.499 17 C -0.033 4.033 18 C -0.216 4.216 19 C 0.053 3.947 20 N -0.471 5.471 21 C 0.020 3.980 22 S 0.142 5.858 23 H 0.269 0.731 24 H 0.028 0.972 25 H 0.024 0.976 26 H 0.399 0.601 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.177 0.823 32 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.099 -15.819 2.009 26.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.349 5.349 11 C 0.285 3.715 12 O -0.414 6.414 13 C -0.028 4.028 14 O -0.243 6.243 15 C 0.301 3.699 16 O -0.387 6.387 17 C -0.073 4.073 18 C -0.337 4.337 19 C -0.098 4.098 20 N -0.184 5.184 21 C -0.277 4.277 22 S 0.395 5.605 23 H 0.078 0.922 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.233 0.767 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.149 0.851 30 H 0.140 0.860 31 H 0.194 0.806 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 21.343 -15.602 2.693 26.574 hybrid contribution -0.356 0.603 -0.877 1.122 sum 20.986 -14.999 1.816 25.859 Atomic orbital electron populations 1.69875 1.06223 1.27537 1.49079 1.24795 0.94809 0.99206 0.93777 0.86812 0.80564 0.83178 0.79112 1.19779 1.20824 1.18463 1.21061 0.88316 0.95345 1.53737 0.90127 1.19562 0.95388 0.77906 0.97086 1.46077 1.04853 1.11588 1.72420 1.19910 0.83729 0.89388 0.78464 1.90700 1.55320 1.45657 1.49745 1.22849 0.77590 0.97389 1.04944 1.86539 1.22021 1.32267 1.83436 1.23514 0.91685 0.81596 0.73065 1.90711 1.66857 1.36343 1.44761 1.19573 0.88531 0.91278 1.07899 1.25300 1.11884 1.00560 0.95988 1.21773 0.99928 0.87965 1.00183 1.66339 1.15719 1.17309 1.19078 1.28428 1.03853 1.04059 0.91357 1.84063 1.60975 1.04535 1.10934 0.92158 0.95402 0.95851 0.76678 0.88206 0.88242 0.85082 0.85971 0.80613 0.78306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.96 55.43 0.77 -25.25 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.55 -14.64 9.83 -34.44 -0.34 -14.97 16 8 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 9 C 0.22 5.29 4.50 -5.19 -0.02 5.27 16 10 N -0.70 -13.54 5.55 -61.47 -0.34 -13.88 16 11 C 0.50 9.25 7.91 -10.99 -0.09 9.16 16 12 O -0.54 -11.99 16.50 -14.10 -0.23 -12.22 16 13 C 0.05 0.69 5.94 36.01 0.21 0.90 16 14 O -0.33 -4.56 9.75 -45.90 -0.45 -5.01 16 15 C 0.46 5.40 7.95 36.00 0.29 5.69 16 16 O -0.50 -7.04 15.78 -18.76 -0.30 -7.34 16 17 C -0.03 -0.26 6.35 -29.04 -0.18 -0.44 16 18 C -0.22 -1.89 5.09 -35.92 -0.18 -2.07 16 19 C 0.05 0.50 11.25 -19.18 -0.22 0.28 16 20 N -0.47 -4.81 10.54 -15.75 -0.17 -4.97 16 21 C 0.02 0.16 12.23 51.58 0.63 0.79 16 22 S 0.14 1.07 23.22 -107.50 -2.50 -1.42 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 25 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 26 H 0.40 6.67 8.32 -40.82 -0.34 6.33 16 27 H 0.10 1.21 8.13 -51.93 -0.42 0.79 16 28 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 29 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.20 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -34.91 307.96 -6.45 -41.37 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -3.22 Total: 1.10 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 0.00 Total: 6.68 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.27 Total: -44.10 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.98 Total: -24.57 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.50 Total: -1.42 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.91 -6.45 -41.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782362978.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.232 kcal (2) G-P(sol) polarization free energy of solvation -34.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds