Wall clock time and date at job start Tue Mar 31 2020 06:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34801 * 116.99989 * 2 1 4 4 O 1.21567 * 120.00543 * 0.02562 * 3 2 1 5 5 C 1.47013 * 119.99938 * 180.02562 * 3 2 1 6 6 C 1.36004 * 123.44594 * 0.02663 * 5 3 2 7 7 S 1.70419 * 110.94918 * 180.23190 * 6 5 3 8 8 C 1.75505 * 92.50464 * 359.64971 * 7 6 5 9 9 N 1.39786 * 124.74070 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99851 * 0.34363 * 9 8 7 11 11 O 1.21599 * 120.00008 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99706 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99654 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.46661 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00431 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99634 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00084 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99655 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47319 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47163 * 119.99895 * 18 16 14 21 21 H 1.48508 * 109.46568 * 239.99395 * 18 16 14 22 22 C 1.33448 * 110.51606 * 0.35310 * 8 7 6 23 23 H 1.09009 * 109.47151 * 299.99693 * 1 2 3 24 24 H 1.09000 * 109.47126 * 59.99231 * 1 2 3 25 25 H 1.08997 * 109.47722 * 180.02562 * 1 2 3 26 26 H 1.08002 * 124.52231 * 359.96007 * 6 5 3 27 27 H 0.96998 * 119.99906 * 180.33136 * 9 8 7 28 28 H 0.96998 * 120.00051 * 359.97438 * 12 10 9 29 29 H 1.09001 * 109.46921 * 299.99125 * 13 12 10 30 30 H 1.08989 * 109.47202 * 59.99327 * 13 12 10 31 31 H 0.96994 * 120.00167 * 180.02562 * 17 16 14 32 32 H 1.08006 * 123.53695 * 179.74426 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4020 2.2207 0.0005 5 6 3.5321 1.2780 -0.0006 6 6 4.3400 0.1840 -0.0016 7 16 5.9823 0.6393 0.0044 8 6 5.5878 2.3494 -0.0022 9 7 6.5280 3.3838 -0.0014 10 6 7.8450 3.0974 -0.0023 11 8 8.2153 1.9391 -0.0032 12 7 8.7515 4.0948 -0.0020 13 6 10.1831 3.7834 -0.0035 14 6 10.9758 5.0651 -0.0036 15 1 10.4644 6.0163 -0.0030 16 6 12.3540 5.0232 -0.0044 17 7 12.9766 3.8648 -0.0045 18 14 13.3366 6.6119 -0.0051 19 1 12.4063 7.7693 -0.0054 20 1 14.1930 6.6648 1.2069 21 1 14.1918 6.6643 -1.2181 22 6 4.2648 2.5242 -0.0009 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.9879 -0.8370 -0.0016 27 1 6.2325 4.3077 -0.0004 28 1 8.4561 5.0187 -0.0016 29 1 10.4296 3.2034 0.8858 30 1 10.4281 3.2049 -0.8941 31 1 13.9461 3.8353 -0.0047 32 1 3.7911 3.4948 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785863451.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:08 Heat of formation + Delta-G solvation = -83.864460 kcal Electronic energy + Delta-G solvation = -18776.056287 eV Core-core repulsion = 15442.694550 eV Total energy + Delta-G solvation = -3333.361737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.45184 -39.90087 -37.45080 -36.34199 -34.62782 -34.20991 -32.46874 -29.41094 -27.85761 -26.97338 -24.93639 -23.12931 -21.74481 -21.01069 -19.81534 -18.58340 -17.58175 -17.55769 -16.46225 -16.39926 -16.17596 -15.45887 -15.32631 -14.77744 -14.42703 -13.83200 -13.69753 -13.37484 -12.98131 -12.87124 -12.65023 -12.24351 -12.11494 -12.05149 -11.17430 -11.02902 -11.01435 -10.97528 -10.68966 -10.58533 -10.32866 -9.64550 -9.48755 -8.89973 -8.42576 -8.29941 -7.80071 -6.25937 -4.33452 0.76536 1.38284 1.76004 2.07496 2.50596 3.02678 3.04246 3.18500 3.26441 3.29194 3.56721 4.24254 4.74856 4.85819 4.87739 4.95243 5.00104 5.10910 5.28749 5.34795 5.60498 5.79767 6.06418 6.22397 6.48617 6.74925 7.16066 7.33729 7.38383 7.63649 7.67449 7.85884 8.46939 8.65762 8.90063 9.33236 10.84141 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.057884 B = 0.002829 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.612327 B = 9893.867306 C =10357.030745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.530 3.470 4 O -0.512 6.512 5 C -0.133 4.133 6 C -0.252 4.252 7 S 0.337 5.663 8 C 0.053 3.947 9 N -0.658 5.658 10 C 0.685 3.315 11 O -0.571 6.571 12 N -0.712 5.712 13 C 0.264 3.736 14 C -0.546 4.546 15 H 0.064 0.936 16 C 0.065 3.935 17 N -0.883 5.883 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.165 4.165 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.174 0.826 27 H 0.412 0.588 28 H 0.392 0.608 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.267 0.733 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.803 -5.919 0.024 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.274 6.274 3 C 0.374 3.626 4 O -0.402 6.402 5 C -0.149 4.149 6 C -0.391 4.391 7 S 0.600 5.400 8 C -0.162 4.162 9 N -0.306 5.306 10 C 0.384 3.616 11 O -0.451 6.451 12 N -0.363 5.363 13 C 0.144 3.856 14 C -0.584 4.584 15 H 0.083 0.917 16 C -0.139 4.139 17 N -0.520 5.520 18 Si 0.733 3.267 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.197 4.197 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.119 0.881 26 H 0.192 0.808 27 H 0.249 0.751 28 H 0.225 0.775 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.956 -7.473 0.031 19.450 hybrid contribution -1.385 2.645 -0.009 2.986 sum -19.341 -4.828 0.022 19.935 Atomic orbital electron populations 1.23248 0.76244 1.03578 1.02568 1.86564 1.23301 1.32843 1.84644 1.20586 0.88426 0.81184 0.72380 1.90831 1.66885 1.35977 1.46484 1.18692 0.89363 0.92839 1.14055 1.26569 1.03267 1.03444 1.05839 1.84630 0.96303 0.92679 1.66422 1.21786 0.91354 0.95439 1.07609 1.42248 1.03916 1.07861 1.76612 1.16240 0.79813 0.86502 0.79007 1.90788 1.77446 1.18448 1.58378 1.45759 1.08344 1.06897 1.75295 1.19153 0.71258 0.97088 0.98122 1.21214 0.91501 0.92063 1.53656 0.91744 1.24940 0.97566 0.96871 0.94548 1.69971 1.09269 1.24240 1.48569 0.86329 0.79918 0.82640 0.77830 1.19630 1.20723 1.20727 1.20400 0.89980 0.98356 1.10917 0.91912 0.91903 0.88100 0.80826 0.75103 0.77463 0.95175 0.95184 0.92347 0.83176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.36 -3.99 10.21 -40.77 -0.42 -4.40 16 3 C 0.53 7.10 7.92 34.29 0.27 7.37 16 4 O -0.51 -7.91 16.59 -19.32 -0.32 -8.23 16 5 C -0.13 -1.75 5.98 -104.65 -0.63 -2.37 16 6 C -0.25 -2.98 10.54 29.93 0.32 -2.66 16 7 S 0.34 4.66 20.06 -107.50 -2.16 2.51 16 8 C 0.05 0.76 7.11 -15.59 -0.11 0.65 16 9 N -0.66 -9.48 5.44 -15.35 -0.08 -9.56 16 10 C 0.68 12.81 8.53 -86.91 -0.74 12.07 16 11 O -0.57 -12.40 13.81 5.28 0.07 -12.33 16 12 N -0.71 -13.89 5.55 -66.41 -0.37 -14.26 16 13 C 0.26 6.59 5.43 -5.19 -0.03 6.56 16 14 C -0.55 -14.13 9.28 -34.44 -0.32 -14.45 16 15 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.88 -25.10 13.29 55.43 0.74 -24.37 16 18 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 C -0.16 -2.19 10.11 -38.77 -0.39 -2.59 16 23 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.17 1.63 8.01 -52.49 -0.42 1.21 16 27 H 0.41 4.52 8.81 -40.82 -0.36 4.16 16 28 H 0.39 6.42 8.34 -40.82 -0.34 6.08 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.03 0.83 8.14 -51.94 -0.42 0.41 16 31 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.15 1.83 8.06 -52.48 -0.42 1.40 16 LS Contribution 306.55 15.07 4.62 4.62 Total: -1.00 -31.92 306.55 -6.79 -38.71 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -3.19 Total: 4.55 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -0.66 Total: 7.58 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.28 Total: -48.19 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.66 Total: -24.96 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -2.16 Total: 2.51 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.92 -6.79 -38.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785863451.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.153 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds