Wall clock time and date at job start Tue Mar 31 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47229 * 2 1 4 4 H 1.08995 * 109.47364 * 54.99714 * 3 2 1 5 5 O 1.42907 * 109.46987 * 294.99496 * 3 2 1 6 6 C 1.35924 * 116.99442 * 94.14477 * 5 3 2 7 7 C 1.38708 * 120.06507 * 2.28851 * 6 5 3 8 8 C 1.38146 * 119.96127 * 179.74714 * 7 6 5 9 9 C 1.38285 * 120.07465 * 0.53117 * 8 7 6 10 10 C 1.38250 * 120.11686 * 359.72693 * 9 8 7 11 11 C 1.38255 * 120.04025 * 0.02562 * 10 9 8 12 12 Cl 1.73603 * 120.03307 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47173 * 174.99982 * 3 2 1 14 14 O 1.21215 * 120.00466 * 114.99834 * 13 3 2 15 15 O 1.34313 * 120.00176 * 294.99966 * 13 3 2 16 16 C 1.34918 * 117.00368 * 180.02562 * 15 13 3 17 17 H 1.08000 * 119.99949 * 359.97438 * 16 15 13 18 18 C 1.38756 * 119.99969 * 179.97438 * 16 15 13 19 19 N 1.31438 * 120.00243 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99818 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47277 * 89.99920 * 20 18 16 22 22 H 1.48503 * 109.47202 * 210.00159 * 20 18 16 23 23 H 1.48506 * 109.47285 * 329.99752 * 20 18 16 24 24 H 1.09001 * 109.47089 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47134 * 300.00404 * 1 2 3 26 26 H 1.09005 * 109.46832 * 60.00580 * 1 2 3 27 27 H 1.09001 * 109.47515 * 239.99756 * 2 1 3 28 28 H 1.09004 * 109.47268 * 120.00058 * 2 1 3 29 29 H 1.08002 * 120.01824 * 0.02562 * 7 6 5 30 30 H 1.07995 * 119.96481 * 180.25279 * 8 7 6 31 31 H 1.08001 * 119.93992 * 179.74302 * 9 8 7 32 32 H 1.08001 * 119.97170 * 180.02562 * 10 9 8 33 33 H 0.96994 * 120.00147 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 8 1.6620 2.0813 -1.2212 6 6 0.5057 2.7958 -1.2115 7 6 -0.2248 2.9197 -0.0389 8 6 -1.3970 3.6507 -0.0303 9 6 -1.8485 4.2499 -1.1919 10 6 -1.1257 4.1241 -2.3637 11 6 0.0507 3.3978 -2.3765 12 17 0.9586 3.2405 -3.8479 13 6 3.5418 1.4442 0.1238 14 8 4.2247 1.8607 -0.7870 15 8 4.1240 0.9843 1.2435 16 6 5.4720 1.0143 1.2898 17 1 6.0328 1.3961 0.4495 18 6 6.1378 0.5548 2.4171 19 7 5.4553 0.0907 3.4400 20 14 8.0043 0.5958 2.4810 21 1 8.4518 1.8924 3.0498 22 1 8.4949 -0.5154 3.3354 23 1 8.5501 0.4427 1.1084 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 0.1249 2.4486 0.8679 30 1 -1.9637 3.7506 0.8836 31 1 -2.7673 4.8175 -1.1837 32 1 -1.4803 4.5934 -3.2694 33 1 5.9208 -0.2309 4.2279 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786585520.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:54 Heat of formation + Delta-G solvation = -95.096757 kcal Electronic energy + Delta-G solvation = -20052.192182 eV Core-core repulsion = 16684.006919 eV Total energy + Delta-G solvation = -3368.185263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.57876 -38.99159 -37.53673 -36.25264 -35.08806 -33.53651 -32.16737 -30.84449 -30.08447 -27.65993 -25.17528 -23.33211 -22.47972 -21.73919 -19.98853 -18.59044 -17.74009 -16.86923 -16.27385 -15.88361 -15.69624 -14.87323 -14.64575 -14.34326 -14.29758 -14.02874 -13.67896 -13.26013 -12.91828 -12.43392 -12.17123 -11.95209 -11.77103 -11.50072 -11.47879 -11.31890 -11.24574 -10.90172 -10.76592 -10.49918 -10.46014 -10.29390 -9.86980 -9.02965 -8.92464 -8.63220 -8.13726 -6.47117 -4.15151 1.06437 1.26022 2.26293 2.88768 3.06321 3.18465 3.25608 3.39448 3.54941 3.97492 4.45426 4.65193 4.79768 4.87055 4.95521 5.12098 5.14504 5.17263 5.37688 5.44595 5.51250 5.62557 5.82344 6.00895 6.09528 6.10051 6.19025 6.31766 6.42177 6.47258 6.63029 7.32905 7.38897 7.88475 8.62912 9.01670 9.74683 10.70505 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.025099 B = 0.004415 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.320277 B = 6340.042365 C = 6844.837691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.137 4.137 3 C 0.101 3.899 4 H 0.102 0.898 5 O -0.270 6.270 6 C 0.152 3.848 7 C -0.204 4.204 8 C -0.074 4.074 9 C -0.155 4.155 10 C -0.075 4.075 11 C -0.074 4.074 12 Cl -0.056 7.056 13 C 0.397 3.603 14 O -0.531 6.531 15 O -0.208 6.208 16 C -0.382 4.382 17 H 0.097 0.903 18 C 0.044 3.956 19 N -0.864 5.864 20 Si 0.944 3.056 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.266 1.266 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.144 0.856 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.405 4.420 -5.881 17.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.175 4.175 3 C 0.044 3.956 4 H 0.120 0.880 5 O -0.182 6.182 6 C 0.104 3.896 7 C -0.222 4.222 8 C -0.092 4.092 9 C -0.174 4.174 10 C -0.093 4.093 11 C -0.101 4.101 12 Cl -0.028 7.028 13 C 0.241 3.759 14 O -0.426 6.426 15 O -0.115 6.115 16 C -0.458 4.458 17 H 0.115 0.885 18 C -0.160 4.160 19 N -0.501 5.501 20 Si 0.769 3.231 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.190 1.190 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.162 0.838 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.931 4.367 -6.185 16.741 hybrid contribution 0.924 0.011 0.161 0.938 sum -14.007 4.378 -6.024 15.864 Atomic orbital electron populations 1.21952 0.95045 1.02291 1.01835 1.21981 0.96403 0.94087 1.05023 1.21745 0.92133 0.95135 0.86606 0.88021 1.86287 1.35683 1.61811 1.34450 1.18798 0.86609 0.91394 0.92773 1.21441 0.97856 1.05227 0.97703 1.21020 0.94950 0.94798 0.98419 1.20970 1.01107 1.02973 0.92316 1.20879 0.92231 0.96904 0.99312 1.20199 0.96653 1.06025 0.87209 1.98375 1.74204 1.96944 1.33238 1.22535 0.89366 0.80715 0.83271 1.90611 1.64743 1.46610 1.40601 1.83838 1.24163 1.68596 1.34943 1.21260 0.77248 1.43625 1.03704 0.88528 1.25326 1.00704 0.95712 0.94256 1.69980 1.36298 1.38675 1.05160 0.85656 0.80346 0.78253 0.78870 1.19810 1.20248 1.19008 0.92003 0.92292 0.92570 0.90320 0.88327 0.83848 0.85192 0.85212 0.84587 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.45 37.16 0.31 -1.63 16 2 C -0.14 -2.23 5.62 -26.74 -0.15 -2.38 16 3 C 0.10 1.92 2.68 -27.89 -0.07 1.85 16 4 H 0.10 1.71 5.38 -51.93 -0.28 1.43 16 5 O -0.27 -5.13 8.66 -39.37 -0.34 -5.47 16 6 C 0.15 2.37 5.32 -39.20 -0.21 2.16 16 7 C -0.20 -2.62 7.16 -39.44 -0.28 -2.91 16 8 C -0.07 -0.76 10.04 -39.60 -0.40 -1.16 16 9 C -0.16 -1.50 10.04 -39.56 -0.40 -1.90 16 10 C -0.07 -0.83 9.83 -39.57 -0.39 -1.22 16 11 C -0.07 -1.06 6.33 -39.36 -0.25 -1.31 16 12 Cl -0.06 -0.85 28.50 -51.86 -1.48 -2.33 16 13 C 0.40 9.98 7.24 36.00 0.26 10.24 16 14 O -0.53 -14.98 15.74 -25.77 -0.41 -15.39 16 15 O -0.21 -5.84 9.72 -20.70 -0.20 -6.04 16 16 C -0.38 -11.23 9.65 30.92 0.30 -10.93 16 17 H 0.10 2.88 6.86 -52.49 -0.36 2.52 16 18 C 0.04 1.23 5.49 -17.53 -0.10 1.13 16 19 N -0.86 -24.72 13.67 55.48 0.76 -23.97 16 20 Si 0.94 21.13 29.55 -169.99 -5.02 16.10 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.66 6.80 -51.93 -0.35 0.31 16 26 H 0.06 0.73 6.27 -51.93 -0.33 0.40 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.10 1.67 8.12 -51.93 -0.42 1.25 16 29 H 0.14 1.75 4.54 -52.49 -0.24 1.51 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 301.75 15.07 4.55 4.55 Total: -1.00 -33.28 301.75 -6.74 -40.02 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -3.23 Total: 0.57 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.37 Total: -8.05 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.76 Total: -23.97 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.95 Total: -26.90 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.48 Total: -2.33 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.28 -6.74 -40.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786585520.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.076 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds