Wall clock time and date at job start Tue Mar 31 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00251 * 2 1 4 4 H 1.48506 * 109.47040 * 239.99981 * 3 2 1 5 5 H 1.48503 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47259 * 119.99683 * 3 2 1 7 7 C 1.37882 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99916 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47152 * 179.97438 * 9 7 2 11 11 O 1.45192 * 109.47109 * 180.02562 * 10 9 7 12 12 C 1.34230 * 117.00018 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00015 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00046 * 180.02562 * 12 11 10 15 15 O 1.42903 * 109.46878 * 179.97438 * 14 12 11 16 16 C 1.35904 * 116.99628 * 179.97438 * 15 14 12 17 17 C 1.38763 * 120.05088 * 359.72437 * 16 15 14 18 18 C 1.38133 * 119.97080 * 179.74311 * 17 16 15 19 19 C 1.38269 * 120.06295 * 0.55626 * 18 17 16 20 20 C 1.38362 * 120.10418 * 359.69766 * 19 18 17 21 21 Cl 1.73601 * 119.98826 * 180.02562 * 20 19 18 22 22 C 1.38281 * 120.02630 * 0.02562 * 20 19 18 23 23 H 0.97000 * 119.99888 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46703 * 60.00212 * 9 7 2 25 25 H 1.08998 * 109.47061 * 300.00592 * 9 7 2 26 26 H 1.09001 * 109.46829 * 59.99813 * 10 9 7 27 27 H 1.08998 * 109.47230 * 300.00549 * 10 9 7 28 28 H 1.09002 * 109.47060 * 299.99765 * 14 12 11 29 29 H 1.09001 * 109.47380 * 59.99853 * 14 12 11 30 30 H 1.08004 * 120.01168 * 0.02964 * 17 16 15 31 31 H 1.07997 * 119.96529 * 180.25450 * 18 17 16 32 32 H 1.07998 * 119.94674 * 179.71932 * 19 18 17 33 33 H 1.08004 * 120.03721 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6622 0.0015 11 8 1.5192 -4.9196 0.0020 12 6 2.2502 -6.0453 0.0024 13 8 3.4568 -5.9821 0.0018 14 6 1.5660 -7.3881 0.0023 15 8 2.5502 -8.4241 0.0022 16 6 2.0971 -9.7054 0.0027 17 6 0.7331 -9.9601 0.0090 18 6 0.2743 -11.2631 0.0042 19 6 1.1731 -12.3138 0.0046 20 6 2.5338 -12.0632 0.0035 21 17 3.6595 -13.3847 0.0033 22 6 2.9974 -10.7604 0.0026 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 2.8725 -3.6040 0.8909 27 1 2.8712 -3.6048 -0.8890 28 1 0.9429 -7.4784 0.8921 29 1 0.9435 -7.4787 -0.8878 30 1 0.0304 -9.1400 0.0131 31 1 -0.7873 -11.4612 0.0050 32 1 0.8124 -13.3318 0.0053 33 1 4.0596 -10.5645 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794020249.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:20 Heat of formation + Delta-G solvation = -112.113190 kcal Electronic energy + Delta-G solvation = -18491.091939 eV Core-core repulsion = 15122.168788 eV Total energy + Delta-G solvation = -3368.923151 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77772 -39.84947 -38.02490 -36.66201 -36.11561 -33.42216 -31.56159 -30.72129 -30.29137 -28.66155 -25.05855 -23.30715 -22.81162 -21.27247 -20.61808 -18.90508 -17.44713 -16.90410 -16.83807 -16.42254 -16.09198 -15.56938 -15.53186 -15.16426 -14.54582 -14.10363 -13.85286 -13.60494 -13.22359 -12.65540 -12.40390 -12.26582 -12.12066 -11.64904 -11.35015 -11.29518 -11.21951 -11.13274 -10.80569 -10.75710 -10.31804 -9.75519 -9.70573 -9.37603 -9.26774 -8.68283 -8.49010 -6.15307 -4.20078 0.70812 0.92858 1.61337 2.23961 2.33607 3.21655 3.27475 3.31503 3.33904 3.51062 4.29916 4.35466 4.56906 4.64891 4.69000 4.77572 4.86687 4.98600 5.01844 5.21399 5.39764 5.72168 5.85236 5.91398 5.97183 5.99587 6.09062 6.53668 6.80081 6.89261 7.47993 7.54274 7.79910 8.02569 8.17450 8.85043 9.44626 10.96079 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.056072 B = 0.002288 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.236626 B =12232.477887 C =12705.965020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.077 3.923 11 O -0.352 6.352 12 C 0.457 3.543 13 O -0.494 6.494 14 C 0.066 3.934 15 O -0.289 6.289 16 C 0.148 3.852 17 C -0.206 4.206 18 C -0.065 4.065 19 C -0.150 4.150 20 C 0.004 3.996 21 Cl -0.063 7.063 22 C -0.142 4.142 23 H 0.264 0.736 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -25.332 0.013 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.269 6.269 12 C 0.298 3.702 13 O -0.381 6.381 14 C -0.010 4.010 15 O -0.202 6.202 16 C 0.102 3.898 17 C -0.225 4.225 18 C -0.083 4.083 19 C -0.169 4.169 20 C -0.023 4.023 21 Cl -0.034 7.034 22 C -0.162 4.162 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.175 -25.166 0.013 25.166 hybrid contribution 0.433 0.901 0.000 0.999 sum 0.608 -24.265 0.012 24.273 Atomic orbital electron populations 1.69959 1.06101 1.27196 1.49548 1.24984 0.94941 0.99429 0.94767 0.86508 0.79474 0.82353 0.78834 1.20029 1.21097 1.20026 1.20927 0.93184 0.90017 1.52536 0.92235 1.19188 0.94172 0.88862 0.98986 1.23764 0.96512 0.77958 1.01322 1.86481 1.42237 1.15438 1.82763 1.22658 0.86554 0.86718 0.74250 1.90690 1.15424 1.87968 1.44039 1.22006 0.90187 0.83300 1.05508 1.86112 1.34201 1.11627 1.88269 1.18765 0.92078 0.83626 0.95378 1.21476 0.94225 0.98916 1.07857 1.20921 0.99957 0.91230 0.96201 1.20985 0.90777 1.00457 1.04701 1.20553 0.90697 0.88339 1.02704 1.98386 1.61627 1.46598 1.96773 1.20223 1.00736 0.88762 1.06444 0.92591 0.95248 0.95244 0.91980 0.91984 0.87456 0.87458 0.84298 0.84476 0.84722 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.59 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.08 1.65 5.40 37.16 0.20 1.85 16 11 O -0.35 -6.60 10.22 -39.26 -0.40 -7.01 16 12 C 0.46 7.62 8.03 36.01 0.29 7.91 16 13 O -0.49 -9.90 16.25 -25.48 -0.41 -10.31 16 14 C 0.07 0.75 5.33 36.01 0.19 0.95 16 15 O -0.29 -3.75 9.67 -39.39 -0.38 -4.13 16 16 C 0.15 1.58 6.69 -39.22 -0.26 1.32 16 17 C -0.21 -1.71 9.04 -39.43 -0.36 -2.07 16 18 C -0.06 -0.46 10.04 -39.61 -0.40 -0.85 16 19 C -0.15 -1.14 9.83 -39.52 -0.39 -1.53 16 20 C 0.00 0.03 6.32 -39.52 -0.25 -0.21 16 21 Cl -0.06 -0.54 28.95 -51.86 -1.50 -2.04 16 22 C -0.14 -1.47 9.77 -39.40 -0.38 -1.86 16 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.33 8.13 -51.93 -0.42 0.90 16 27 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 28 H 0.11 0.93 7.65 -51.93 -0.40 0.54 16 29 H 0.11 0.93 7.67 -51.93 -0.40 0.54 16 30 H 0.14 0.88 6.30 -52.48 -0.33 0.55 16 31 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.14 1.46 8.06 -52.48 -0.42 1.03 16 LS Contribution 314.00 15.07 4.73 4.73 Total: -1.00 -31.63 314.00 -7.79 -39.42 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: -3.63 Total: -4.29 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -1.92 Total: -7.31 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.74 Total: -25.17 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -1.20 Total: -21.45 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.63 -7.79 -39.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794020249.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.692 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds