Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86808 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47142 * 274.53013 * 3 2 1 5 5 H 1.48508 * 109.46771 * 34.53160 * 3 2 1 6 6 H 1.48496 * 109.47083 * 154.52723 * 3 2 1 7 7 C 1.40247 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99689 * 197.90718 * 7 2 1 9 9 C 1.41088 * 120.00057 * 17.90299 * 7 2 1 10 10 C 1.40898 * 120.09801 * 25.25428 * 9 7 2 11 11 C 1.36301 * 119.89747 * 180.23021 * 10 9 7 12 12 C 1.40062 * 120.09854 * 359.51805 * 11 10 9 13 13 C 1.47511 * 119.90007 * 180.25545 * 12 11 10 14 14 O 1.21504 * 120.00118 * 359.97438 * 13 12 11 15 15 O 1.34777 * 120.00005 * 179.97438 * 13 12 11 16 16 C 1.45197 * 117.00031 * 179.97438 * 15 13 12 17 17 C 1.50705 * 109.47407 * 179.97438 * 16 15 13 18 18 O 1.20758 * 119.99684 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00132 * 180.02562 * 17 16 15 20 20 F 1.39896 * 109.47159 * 34.99698 * 19 17 16 21 21 F 1.39897 * 109.47219 * 155.00040 * 19 17 16 22 22 C 1.40070 * 120.20069 * 0.23303 * 12 11 10 23 23 C 1.36298 * 120.10091 * 359.97438 * 22 12 11 24 24 H 0.97002 * 119.99961 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.05263 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.94806 * 179.78887 * 11 10 9 27 27 H 1.08994 * 109.47193 * 300.00204 * 16 15 13 28 28 H 1.09005 * 109.47170 * 59.99890 * 16 15 13 29 29 H 1.09003 * 109.46815 * 275.00258 * 19 17 16 30 30 H 1.08001 * 119.95013 * 180.02562 * 22 12 11 31 31 H 1.08003 * 120.04908 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.3921 2.1018 -1.3956 5 1 1.4889 2.6232 0.7937 6 1 3.5825 1.4145 0.6021 7 6 2.0076 -1.2146 -0.0005 8 1 3.0484 -1.2373 0.2870 9 6 1.3534 -2.4067 -0.3767 10 6 0.2325 -2.3589 -1.2291 11 6 -0.3992 -3.5127 -1.5861 12 6 0.0703 -4.7453 -1.1150 13 6 -0.6133 -5.9917 -1.5087 14 8 -1.5825 -5.9481 -2.2402 15 8 -0.1629 -7.1790 -1.0570 16 6 -0.8849 -8.3639 -1.4846 17 6 -0.2414 -9.5879 -0.8854 18 8 0.7256 -9.4732 -0.1713 19 6 -0.8047 -10.9548 -1.1775 20 9 -1.2924 -10.9878 -2.4882 21 9 0.2018 -11.9152 -1.0300 22 6 1.1874 -4.7981 -0.2716 23 6 1.8228 -3.6490 0.0939 24 1 -0.4850 0.8401 0.0004 25 1 -0.1280 -1.4091 -1.5958 26 1 -1.2605 -3.4767 -2.2367 27 1 -1.9208 -8.2979 -1.1521 28 1 -0.8562 -8.4342 -2.5720 29 1 -1.6164 -11.1693 -0.4823 30 1 1.5463 -5.7508 0.0889 31 1 2.6843 -3.6907 0.7440 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800190010.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = -205.290896 kcal Electronic energy + Delta-G solvation = -20862.733304 eV Core-core repulsion = 16937.972984 eV Total energy + Delta-G solvation = -3924.760320 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.069 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.51731 -47.54106 -40.19301 -39.20231 -37.48562 -35.70643 -34.02162 -30.83299 -30.17048 -29.60686 -27.35312 -25.92185 -22.50707 -21.21292 -20.81310 -20.02283 -18.23778 -17.92454 -17.84334 -17.60752 -16.74086 -16.37787 -16.22242 -15.48748 -14.90738 -14.51908 -14.31186 -14.07419 -13.86208 -13.84435 -13.43310 -13.13242 -12.83444 -12.63252 -12.33773 -12.26907 -11.91701 -11.46934 -11.33237 -11.04337 -10.76206 -10.49611 -10.22599 -10.14756 -9.63947 -9.56881 -9.45028 -7.80944 -7.70453 -7.15115 -4.73350 1.12498 1.95789 2.30699 2.82815 2.90291 2.93772 2.98514 3.37303 3.53014 3.61235 3.66903 3.98418 4.18617 4.40225 4.51814 4.96068 5.06680 5.45897 5.73970 6.15385 6.20200 6.67437 6.69408 6.76305 6.81636 6.98656 7.00062 7.36073 7.55009 7.72802 7.80158 7.95515 8.30307 8.50849 8.56119 8.64006 9.76394 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.048376 B = 0.002987 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.662872 B = 9372.089799 C = 9834.853180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.432 4.432 8 H 0.089 0.911 9 C 0.132 3.868 10 C -0.184 4.184 11 C -0.031 4.031 12 C -0.277 4.277 13 C 0.515 3.485 14 O -0.547 6.547 15 O -0.345 6.345 16 C 0.023 3.977 17 C 0.313 3.687 18 O -0.379 6.379 19 C 0.236 3.764 20 F -0.185 7.185 21 F -0.182 7.182 22 C -0.026 4.026 23 C -0.239 4.239 24 H 0.290 0.710 25 H 0.123 0.877 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.146 0.854 30 H 0.104 0.896 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 -11.901 -0.981 12.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.459 4.459 8 H 0.107 0.893 9 C 0.129 3.871 10 C -0.203 4.203 11 C -0.050 4.050 12 C -0.279 4.279 13 C 0.368 3.632 14 O -0.441 6.441 15 O -0.263 6.263 16 C -0.053 4.053 17 C 0.181 3.819 18 O -0.246 6.246 19 C 0.181 3.819 20 F -0.167 7.167 21 F -0.163 7.163 22 C -0.045 4.045 23 C -0.258 4.258 24 H 0.101 0.899 25 H 0.141 0.859 26 H 0.121 0.879 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.163 0.837 30 H 0.122 0.878 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.612 -11.714 -0.788 12.028 hybrid contribution 0.053 0.482 -0.154 0.509 sum -2.559 -11.232 -0.942 11.558 Atomic orbital electron populations 1.69739 1.08035 1.30476 1.30125 1.26184 0.94867 1.02168 0.91851 0.86136 0.80653 0.79553 0.79639 1.18831 1.19838 1.18098 1.19976 0.98535 0.91163 1.36207 0.89330 1.17862 0.90196 0.92254 0.86821 1.20963 1.00177 0.96851 1.02340 1.20439 0.97096 0.91083 0.96348 1.18148 1.05096 0.88351 1.16318 1.21705 0.81815 0.82738 0.76935 1.90717 1.28357 1.87232 1.37790 1.86689 1.55953 1.14254 1.69390 1.22950 0.97303 0.83293 1.01718 1.25470 0.84826 0.91169 0.80472 1.90549 1.20310 1.87582 1.26129 1.22164 0.89112 0.87354 0.83223 1.93063 1.88112 1.96846 1.38630 1.93069 1.62910 1.64655 1.95649 1.20591 0.92947 0.97438 0.93522 1.20735 1.04706 0.92592 1.07778 0.89889 0.85946 0.87942 0.87339 0.87066 0.83747 0.87781 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.93 11.00 55.56 0.61 -17.32 16 2 C 0.07 1.64 5.13 -17.31 -0.09 1.55 16 3 Si 0.92 16.77 29.60 -169.99 -5.03 11.74 16 4 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 5 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 6 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 7 C -0.43 -10.44 9.04 -37.75 -0.34 -10.78 16 8 H 0.09 2.02 7.91 -52.48 -0.42 1.61 16 9 C 0.13 3.30 5.57 -106.80 -0.59 2.71 16 10 C -0.18 -4.57 8.63 -39.27 -0.34 -4.91 16 11 C -0.03 -0.73 9.52 -39.60 -0.38 -1.11 16 12 C -0.28 -6.40 5.89 -104.75 -0.62 -7.02 16 13 C 0.52 10.97 7.89 34.51 0.27 11.24 16 14 O -0.55 -12.16 16.11 -19.27 -0.31 -12.47 16 15 O -0.34 -6.36 8.98 -47.40 -0.43 -6.79 16 16 C 0.02 0.30 5.51 36.01 0.20 0.49 16 17 C 0.31 3.63 7.11 -29.03 -0.21 3.42 16 18 O -0.38 -5.86 16.91 -13.71 -0.23 -6.10 16 19 C 0.24 1.90 5.75 36.00 0.21 2.11 16 20 F -0.19 -1.64 16.83 2.25 0.04 -1.61 16 21 F -0.18 -1.92 17.06 2.25 0.04 -1.88 16 22 C -0.03 -0.59 9.55 -39.59 -0.38 -0.97 16 23 C -0.24 -5.58 9.73 -39.28 -0.38 -5.96 16 24 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 25 H 0.12 3.07 6.20 -52.48 -0.33 2.74 16 26 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 27 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.11 1.34 8.03 -51.93 -0.42 0.93 16 29 H 0.15 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.10 2.15 7.59 -52.49 -0.40 1.75 16 31 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 297.11 15.07 4.48 4.48 Total: -1.00 -29.17 297.11 -5.84 -35.01 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -2.36 Total: 4.17 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.65 Total: -9.23 kcal Atomic # 7 Polarization: -17.93 SS G_CDS: 0.61 Total: -17.32 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.97 Total: -25.35 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.08 Total: -3.49 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.17 -5.84 -35.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800190010.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.282 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds