Wall clock time and date at job start Tue Mar 31 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47034 * 2 1 4 4 O 1.42900 * 109.47427 * 64.99991 * 3 2 1 5 5 C 1.50700 * 109.47150 * 185.00245 * 3 2 1 6 6 O 1.21210 * 120.00148 * 94.99871 * 5 3 2 7 7 O 1.34310 * 119.99838 * 274.99760 * 5 3 2 8 8 C 1.34921 * 117.00079 * 179.97438 * 7 5 3 9 9 H 1.08001 * 120.00183 * 0.02562 * 8 7 5 10 10 C 1.38757 * 119.99907 * 179.97438 * 8 7 5 11 11 N 1.31436 * 120.00298 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99618 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47392 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46797 * 120.00784 * 12 10 8 15 15 H 1.48497 * 109.47286 * 240.00348 * 12 10 8 16 16 C 1.50706 * 109.47084 * 304.99776 * 3 2 1 17 17 C 1.38264 * 119.99067 * 149.99674 * 16 3 2 18 18 C 1.38224 * 120.02445 * 180.02562 * 17 16 3 19 19 C 1.38237 * 120.01313 * 0.26351 * 18 17 16 20 20 C 1.38338 * 119.98297 * 359.50743 * 19 18 17 21 21 Cl 1.73597 * 120.00852 * 180.25600 * 20 19 18 22 22 C 1.38189 * 119.99237 * 330.02569 * 16 3 2 23 23 H 1.08994 * 109.47483 * 60.00115 * 1 2 3 24 24 H 1.08999 * 109.47205 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47155 * 299.99640 * 1 2 3 26 26 H 1.09000 * 109.47155 * 240.00360 * 2 1 3 27 27 H 1.09003 * 109.47528 * 119.99621 * 2 1 3 28 28 H 0.96695 * 113.99973 * 180.02562 * 4 3 2 29 29 H 0.97003 * 120.00206 * 179.97438 * 11 10 8 30 30 H 1.07997 * 119.98741 * 359.97438 * 17 16 3 31 31 H 1.08002 * 119.99032 * 179.97438 * 18 17 16 32 32 H 1.07995 * 120.00242 * 179.74655 * 19 18 17 33 33 H 1.08000 * 120.00840 * 359.97438 * 22 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6619 2.0814 1.2210 5 6 3.5419 1.4443 -0.1239 6 8 4.0600 1.5669 -1.2128 7 8 4.3062 1.3102 0.9723 8 6 5.6433 1.3195 0.7916 9 1 6.0533 1.4317 -0.2012 10 6 6.4916 1.1859 1.8815 11 7 5.9927 1.0497 3.0899 12 14 8.3427 1.1980 1.6312 13 1 8.6459 1.3628 0.1869 14 1 8.9378 2.3251 2.3933 15 1 8.9161 -0.0837 2.1147 16 6 1.4391 2.1877 -1.1639 17 6 1.2138 3.5487 -1.0711 18 6 0.6623 4.2329 -2.1380 19 6 0.3304 3.5556 -3.2966 20 6 0.5600 2.1947 -3.3917 21 17 0.1497 1.3448 -4.8487 22 6 1.1128 1.5106 -2.3235 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.9525 3.0011 1.2900 29 1 6.5857 0.9560 3.8518 30 1 1.4682 4.0773 -0.1643 31 1 0.4862 5.2959 -2.0648 32 1 -0.1043 4.0896 -4.1285 33 1 1.2887 0.4474 -2.3959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800319882.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:16 Heat of formation + Delta-G solvation = -110.007032 kcal Electronic energy + Delta-G solvation = -20414.233553 eV Core-core repulsion = 17045.401732 eV Total energy + Delta-G solvation = -3368.831821 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38140 -38.69239 -36.98811 -36.17801 -35.18121 -33.35727 -32.18341 -30.60433 -30.39469 -27.23012 -25.18464 -22.99231 -22.38250 -21.58951 -19.70369 -18.29211 -17.67917 -17.04910 -15.73407 -15.56186 -15.25366 -14.81322 -14.57410 -14.37178 -14.11276 -13.53960 -13.44579 -13.14948 -12.89897 -12.42218 -11.89105 -11.77735 -11.66423 -11.56183 -11.29966 -11.26229 -11.07573 -10.95235 -10.74002 -10.50101 -10.44327 -10.17598 -9.82948 -8.98575 -8.78218 -8.63688 -8.61303 -6.45846 -4.14220 1.16582 1.28715 2.12108 3.02574 3.15913 3.23282 3.36322 3.53708 3.92404 4.38182 4.44000 4.67484 4.76977 5.01196 5.04195 5.17252 5.27991 5.39597 5.51988 5.59022 5.67963 5.84345 5.96661 6.10360 6.20881 6.28316 6.36010 6.44997 6.55400 6.60507 6.79376 7.33753 7.77732 7.88981 8.62315 9.01907 9.78139 10.70858 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.004784 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.050158 B = 5851.639392 C = 6142.896688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C 0.200 3.800 4 O -0.530 6.530 5 C 0.366 3.634 6 O -0.544 6.544 7 O -0.196 6.196 8 C -0.386 4.386 9 H 0.096 0.904 10 C 0.045 3.955 11 N -0.857 5.857 12 Si 0.941 3.059 13 H -0.265 1.265 14 H -0.275 1.275 15 H -0.275 1.275 16 C -0.069 4.069 17 C -0.103 4.103 18 C -0.107 4.107 19 C -0.113 4.113 20 C -0.035 4.035 21 Cl -0.077 7.077 22 C -0.080 4.080 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.379 0.621 29 H 0.270 0.730 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.252 3.108 -8.165 15.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C 0.157 3.843 4 O -0.336 6.336 5 C 0.211 3.789 6 O -0.442 6.442 7 O -0.102 6.102 8 C -0.462 4.462 9 H 0.114 0.886 10 C -0.160 4.160 11 N -0.493 5.493 12 Si 0.766 3.234 13 H -0.189 1.189 14 H -0.201 1.201 15 H -0.201 1.201 16 C -0.070 4.070 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.132 4.132 20 C -0.062 4.062 21 Cl -0.048 7.048 22 C -0.098 4.098 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.227 0.773 29 H 0.080 0.920 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.330 2.447 -8.205 15.011 hybrid contribution 1.265 0.509 -0.365 1.411 sum -11.065 2.956 -8.571 14.305 Atomic orbital electron populations 1.21826 0.94464 1.01655 1.02718 1.21533 0.97005 0.92071 1.04051 1.19616 0.87634 0.94261 0.82740 1.86591 1.79902 1.30513 1.36634 1.23701 0.90204 0.80603 0.84348 1.90592 1.74730 1.50254 1.28593 1.83940 1.19590 1.73624 1.33008 1.21330 0.77283 1.51769 0.95834 0.88649 1.25353 1.00481 0.95989 0.94199 1.70016 1.35893 1.44971 0.98428 0.85637 0.80513 0.78236 0.79029 1.18926 1.20085 1.20058 1.19988 0.97824 0.94135 0.95014 1.21002 0.98400 0.93432 0.99260 1.20989 0.98984 0.99956 0.92550 1.21001 1.01096 0.92225 0.98858 1.20816 1.03806 0.92917 0.88622 1.98353 1.92336 1.77829 1.36262 1.20876 0.97075 1.00816 0.91048 0.92474 0.92494 0.91589 0.90196 0.89317 0.77271 0.92012 0.85410 0.84977 0.85117 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.34 37.16 0.35 -1.67 16 2 C -0.11 -1.83 4.63 -26.73 -0.12 -1.95 16 3 C 0.20 3.75 0.91 -92.92 -0.08 3.67 16 4 O -0.53 -9.52 12.04 -49.09 -0.59 -10.11 16 5 C 0.37 8.94 6.74 36.01 0.24 9.18 16 6 O -0.54 -14.46 15.47 -19.05 -0.29 -14.75 16 7 O -0.20 -5.54 9.50 -25.88 -0.25 -5.78 16 8 C -0.39 -11.31 9.65 30.92 0.30 -11.01 16 9 H 0.10 2.83 6.86 -52.49 -0.36 2.47 16 10 C 0.04 1.25 5.49 -17.53 -0.10 1.15 16 11 N -0.86 -24.84 13.67 55.48 0.76 -24.08 16 12 Si 0.94 21.08 29.55 -169.99 -5.02 16.05 16 13 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 C -0.07 -1.13 3.48 -104.63 -0.36 -1.49 16 17 C -0.10 -1.47 9.32 -39.58 -0.37 -1.83 16 18 C -0.11 -1.29 10.05 -39.59 -0.40 -1.69 16 19 C -0.11 -1.39 9.83 -39.55 -0.39 -1.78 16 20 C -0.04 -0.49 6.32 -39.50 -0.25 -0.74 16 21 Cl -0.08 -0.96 28.96 -51.86 -1.50 -2.46 16 22 C -0.08 -1.23 7.14 -39.55 -0.28 -1.52 16 23 H 0.06 0.74 5.69 -51.93 -0.30 0.45 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.92 7.82 -51.93 -0.41 0.51 16 26 H 0.08 1.28 6.81 -51.93 -0.35 0.93 16 27 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 28 H 0.38 5.79 7.32 45.56 0.33 6.12 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 30 H 0.13 1.58 6.49 -52.49 -0.34 1.24 16 31 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.14 2.06 6.21 -52.49 -0.33 1.73 16 LS Contribution 301.30 15.07 4.54 4.54 Total: -1.00 -33.17 301.30 -6.40 -39.57 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -2.57 Total: 6.70 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -1.47 Total: -9.69 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.76 Total: -24.08 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -1.13 Total: -30.65 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.17 -6.40 -39.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800319882.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.434 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds