Wall clock time and date at job start Tue Mar 31 2020 05:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99907 * 2 1 4 4 H 1.48506 * 109.46766 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47062 * 300.00064 * 3 2 1 6 6 H 1.48499 * 109.46799 * 60.00240 * 3 2 1 7 7 C 1.37877 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00609 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47338 * 179.97438 * 9 7 2 11 11 O 1.45196 * 109.46831 * 179.97438 * 10 9 7 12 12 C 1.34235 * 116.99701 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00160 * 359.97438 * 12 11 10 14 14 C 1.50695 * 119.99933 * 180.02562 * 12 11 10 15 15 H 1.09001 * 109.47311 * 305.00043 * 14 12 11 16 16 O 1.42906 * 109.47201 * 184.99908 * 14 12 11 17 17 C 1.50696 * 109.47501 * 64.99948 * 14 12 11 18 18 C 1.38247 * 119.98658 * 265.00328 * 17 14 12 19 19 C 1.38216 * 120.01497 * 179.97438 * 18 17 14 20 20 C 1.38357 * 119.98603 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38219 * 119.98930 * 359.40143 * 22 20 19 24 24 H 0.97000 * 120.00097 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47145 * 59.99218 * 9 7 2 26 26 H 1.09001 * 109.46929 * 299.99951 * 9 7 2 27 27 H 1.09004 * 109.46958 * 60.00000 * 10 9 7 28 28 H 1.08993 * 109.47033 * 299.99942 * 10 9 7 29 29 H 0.96695 * 113.99566 * 299.99518 * 16 14 12 30 30 H 1.08003 * 119.99321 * 359.97438 * 18 17 14 31 31 H 1.08002 * 120.00776 * 180.02562 * 19 18 17 32 32 H 1.08000 * 120.00661 * 179.71600 * 22 20 19 33 33 H 1.07997 * 119.99445 * 180.32231 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5193 -4.9195 0.0011 12 6 2.2504 -6.0453 0.0018 13 8 3.4570 -5.9820 0.0013 14 6 1.5663 -7.3880 0.0018 15 1 0.8758 -7.4439 0.8434 16 8 2.5459 -8.4217 0.1199 17 6 0.8037 -7.5634 -1.2861 18 6 -0.5409 -7.2471 -1.3415 19 6 -1.2408 -7.4073 -2.5225 20 6 -0.5954 -7.8847 -3.6494 21 17 -1.4736 -8.0855 -5.1334 22 6 0.7487 -8.2070 -3.5916 23 6 1.4491 -8.0403 -2.4117 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 3.1949 -8.4322 -0.5968 30 1 -1.0447 -6.8748 -0.4616 31 1 -2.2912 -7.1598 -2.5658 32 1 1.2520 -8.5841 -4.4697 33 1 2.4996 -8.2869 -2.3680 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811284487.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:09 Heat of formation + Delta-G solvation = -129.811623 kcal Electronic energy + Delta-G solvation = -19331.197466 eV Core-core repulsion = 15961.506853 eV Total energy + Delta-G solvation = -3369.690613 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.68145 -39.36305 -37.35159 -36.57019 -35.81217 -33.41715 -31.90562 -31.28013 -30.32397 -27.49120 -24.95839 -23.14458 -22.49989 -21.23135 -20.64097 -18.26450 -17.89999 -16.92407 -16.51203 -16.27383 -15.72973 -15.67078 -14.86067 -14.54616 -14.20942 -13.79395 -13.73957 -13.39450 -13.16103 -12.67753 -12.41085 -12.15144 -11.78649 -11.73856 -11.32629 -11.17807 -11.07930 -11.03171 -10.83073 -10.71494 -10.22005 -9.73927 -9.67526 -9.33511 -9.30082 -8.85365 -8.48818 -6.14545 -4.19085 0.75958 1.03401 1.88062 2.31259 2.89244 3.24952 3.32165 3.33928 3.37881 4.05351 4.24827 4.35785 4.44652 4.60067 4.87921 5.00498 5.04645 5.22381 5.28099 5.36126 5.65396 5.85789 5.95824 5.98720 6.00859 6.13735 6.46579 6.55917 6.82482 7.10735 7.49346 7.56234 7.80431 8.01979 8.18945 8.86476 9.45769 10.96926 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.003937 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.611717 B = 7110.992732 C = 8387.208175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.074 3.926 11 O -0.349 6.349 12 C 0.431 3.569 13 O -0.507 6.507 14 C 0.162 3.838 15 H 0.147 0.853 16 O -0.525 6.525 17 C -0.115 4.115 18 C -0.075 4.075 19 C -0.106 4.106 20 C -0.028 4.028 21 Cl -0.070 7.070 22 C -0.109 4.109 23 C -0.095 4.095 24 H 0.263 0.737 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.384 0.616 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 -18.674 -5.736 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.265 6.265 12 C 0.272 3.728 13 O -0.396 6.396 14 C 0.101 3.899 15 H 0.165 0.835 16 O -0.332 6.332 17 C -0.116 4.116 18 C -0.093 4.093 19 C -0.125 4.125 20 C -0.055 4.055 21 Cl -0.041 7.041 22 C -0.127 4.127 23 C -0.113 4.113 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.234 0.766 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.178 -18.635 -5.338 19.506 hybrid contribution 0.803 1.228 -0.684 1.619 sum -1.375 -17.407 -6.022 18.470 Atomic orbital electron populations 1.69973 1.06095 1.26936 1.49748 1.24972 0.94909 0.99390 0.94787 0.86424 0.80072 0.83137 0.77748 1.19578 1.20795 1.20781 1.21007 0.93213 0.90079 1.52255 0.92218 1.19173 0.94144 0.88958 0.98902 1.23706 0.96480 0.78601 1.01007 1.86528 1.42298 1.15708 1.81990 1.24281 0.87088 0.88132 0.73269 1.90655 1.15511 1.87977 1.45496 1.20283 0.89404 0.82732 0.97482 0.83533 1.86671 1.43508 1.49855 1.53149 1.20200 0.95057 1.01215 0.95090 1.21015 0.92983 0.96919 0.98387 1.21096 1.01002 0.99181 0.91207 1.21011 0.93067 1.03216 0.88162 1.98377 1.76058 1.95915 1.33798 1.20964 0.92343 1.00729 0.98705 1.20834 1.00031 0.98731 0.91702 0.92722 0.95335 0.95292 0.92166 0.92290 0.76641 0.83943 0.84297 0.84609 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.07 1.62 5.40 37.16 0.20 1.82 16 11 O -0.35 -6.63 10.21 -39.27 -0.40 -7.03 16 12 C 0.43 7.10 7.26 36.00 0.26 7.36 16 13 O -0.51 -9.58 16.07 -25.46 -0.41 -9.99 16 14 C 0.16 1.95 3.73 -29.04 -0.11 1.84 16 15 H 0.15 1.47 8.05 -51.93 -0.42 1.05 16 16 O -0.53 -6.06 12.79 -55.14 -0.71 -6.76 16 17 C -0.11 -1.29 4.98 -104.62 -0.52 -1.82 16 18 C -0.07 -0.81 9.68 -39.59 -0.38 -1.19 16 19 C -0.11 -1.12 9.83 -39.55 -0.39 -1.50 16 20 C -0.03 -0.30 6.32 -39.50 -0.25 -0.55 16 21 Cl -0.07 -0.71 28.96 -51.86 -1.50 -2.21 16 22 C -0.11 -1.09 9.83 -39.55 -0.39 -1.47 16 23 C -0.09 -0.97 9.33 -39.59 -0.37 -1.34 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 28 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 29 H 0.38 3.48 7.14 45.56 0.33 3.80 16 30 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.13 1.06 6.61 -52.49 -0.35 0.71 16 LS Contribution 313.04 15.07 4.72 4.72 Total: -1.00 -31.80 313.04 -8.03 -39.83 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -2.94 Total: 0.23 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -2.51 Total: -9.70 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.74 Total: -25.28 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -1.52 Total: -23.77 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.80 -8.03 -39.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811284487.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.977 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds