Wall clock time and date at job start Tue Mar 31 2020 05:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34715 * 117.00041 * 2 1 4 4 O 1.21478 * 119.99952 * 0.02562 * 3 2 1 5 5 C 1.47682 * 120.00017 * 180.02562 * 3 2 1 6 6 C 1.39840 * 120.05956 * 359.97438 * 5 3 2 7 7 C 1.37946 * 120.18493 * 180.02562 * 6 5 3 8 8 C 1.38295 * 120.29663 * 359.97438 * 7 6 5 9 9 Cl 1.73603 * 119.94146 * 179.97438 * 8 7 6 10 10 C 1.39923 * 120.10757 * 359.97438 * 8 7 6 11 11 C 1.47616 * 120.08967 * 179.97438 * 10 8 7 12 12 O 1.21511 * 119.99426 * 359.72855 * 11 10 8 13 13 O 1.34740 * 119.99998 * 179.97438 * 11 10 8 14 14 C 1.34856 * 116.99632 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00028 * 0.02562 * 14 13 11 16 16 C 1.38810 * 119.99307 * 180.02562 * 14 13 11 17 17 N 1.31411 * 120.00343 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99458 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47173 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.46925 * 120.00184 * 18 16 14 21 21 H 1.48499 * 109.46718 * 239.99862 * 18 16 14 22 22 C 1.39324 * 120.05638 * 180.25716 * 5 3 2 23 23 H 1.08992 * 109.47454 * 60.00112 * 1 2 3 24 24 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46821 * 299.99398 * 1 2 3 26 26 H 1.08004 * 119.90512 * 0.02562 * 6 5 3 27 27 H 1.08005 * 119.85132 * 179.97438 * 7 6 5 28 28 H 0.96996 * 119.99917 * 180.02562 * 17 16 14 29 29 H 1.08004 * 120.14908 * 359.97438 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5384 1.2776 -0.0006 6 6 4.3012 0.1056 -0.0006 7 6 5.6789 0.1748 -0.0006 8 6 6.3159 1.4023 -0.0011 9 17 8.0502 1.4786 -0.0004 10 6 5.5647 2.5828 -0.0022 11 6 6.2449 3.8929 -0.0022 12 8 7.4588 3.9470 0.0037 13 8 5.5198 5.0285 -0.0038 14 6 6.2031 6.1911 -0.0042 15 1 7.2830 6.1828 -0.0037 16 6 5.5182 7.3985 -0.0053 17 7 4.2041 7.4086 -0.0063 18 14 6.4647 9.0091 -0.0051 19 1 7.9226 8.7265 -0.0032 20 1 6.1129 9.7900 -1.2182 21 1 6.1109 9.7910 1.2067 22 6 4.1721 2.5183 0.0048 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 3.8103 -0.8564 -0.0006 27 1 6.2628 -0.7338 -0.0002 28 1 3.7256 8.2523 -0.0075 29 1 3.5872 3.4262 0.0090 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811291374.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:42 Heat of formation + Delta-G solvation = -132.677514 kcal Electronic energy + Delta-G solvation = -19293.365722 eV Core-core repulsion = 15787.717740 eV Total energy + Delta-G solvation = -3505.647981 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.033 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57721 -39.43000 -38.16962 -36.48615 -36.09901 -35.13631 -32.29182 -31.40373 -31.15654 -27.81677 -25.75856 -24.01558 -23.56448 -21.46323 -20.14171 -18.12818 -17.76720 -17.16646 -16.38935 -16.37348 -16.24685 -15.17906 -14.74967 -14.69862 -14.25276 -14.00755 -13.72662 -13.54392 -12.93811 -12.76707 -12.30532 -12.11915 -11.72067 -11.47298 -11.26740 -11.26364 -10.87518 -10.80666 -10.55136 -10.50232 -10.42298 -9.89354 -9.03814 -8.82061 -8.76963 -8.64089 -6.50223 -4.11806 0.49052 1.05977 2.30125 2.37026 2.59310 3.09331 3.16296 3.24095 3.36981 3.82213 4.08217 4.34700 4.60047 4.79506 4.96851 5.01648 5.07827 5.10007 5.22599 5.33401 5.41059 5.75000 5.92043 6.07014 6.15722 6.32772 6.62600 6.76363 7.32382 7.72268 7.86545 8.64177 8.97348 9.75475 10.66672 Molecular weight = 284.03amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.005734 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.841444 B = 4881.965324 C = 6788.659668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.509 3.491 4 O -0.492 6.492 5 C -0.139 4.139 6 C -0.043 4.043 7 C -0.138 4.138 8 C 0.035 3.965 9 Cl -0.025 7.025 10 C -0.090 4.090 11 C 0.423 3.577 12 O -0.529 6.529 13 O -0.202 6.202 14 C -0.370 4.370 15 H 0.101 0.899 16 C 0.041 3.959 17 N -0.852 5.852 18 Si 0.945 3.055 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.275 1.275 22 C 0.003 3.997 23 H 0.064 0.936 24 H 0.101 0.899 25 H 0.064 0.936 26 H 0.147 0.853 27 H 0.145 0.855 28 H 0.272 0.728 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.806 -15.911 0.006 16.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.354 3.646 4 O -0.380 6.380 5 C -0.140 4.140 6 C -0.061 4.061 7 C -0.157 4.157 8 C 0.007 3.993 9 Cl 0.005 6.995 10 C -0.092 4.092 11 C 0.271 3.729 12 O -0.427 6.427 13 O -0.109 6.109 14 C -0.445 4.445 15 H 0.119 0.881 16 C -0.165 4.165 17 N -0.488 5.488 18 Si 0.770 3.230 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.016 4.016 23 H 0.083 0.917 24 H 0.119 0.881 25 H 0.083 0.917 26 H 0.165 0.835 27 H 0.163 0.837 28 H 0.082 0.918 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.758 -15.396 0.010 15.848 hybrid contribution 0.238 0.817 -0.001 0.850 sum -3.520 -14.579 0.009 14.998 Atomic orbital electron populations 1.23271 0.76005 1.03571 1.02846 1.86513 1.23540 1.32722 1.84723 1.21076 0.88901 0.81514 0.73139 1.90910 1.66492 1.35801 1.44749 1.19046 0.89313 0.94672 1.11002 1.21446 0.92881 0.98116 0.93687 1.20923 0.94391 0.96225 1.04128 1.21347 0.86888 0.93472 0.97554 1.98416 1.06794 1.98634 1.95635 1.19196 0.92604 0.92006 1.05432 1.20314 0.86063 0.84964 0.81607 1.90731 1.14060 1.87376 1.50486 1.83880 1.39336 1.13179 1.74535 1.21401 0.92562 0.79583 1.50997 0.88138 1.25427 0.95915 0.98995 0.96139 1.69992 1.06340 1.27771 1.44688 0.85571 0.79537 0.79717 0.78216 1.18762 1.20053 1.20057 1.21744 0.93016 0.98001 0.88852 0.91739 0.88066 0.91748 0.83536 0.83719 0.91789 0.81820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.39 15 2 O -0.36 -4.29 9.80 -40.53 -0.40 -4.69 15 3 C 0.51 7.76 7.89 34.59 0.27 8.04 15 4 O -0.49 -9.11 16.13 -19.25 -0.31 -9.42 15 5 C -0.14 -2.12 5.87 -105.04 -0.62 -2.74 15 6 C -0.04 -0.51 9.61 -39.09 -0.38 -0.89 15 7 C -0.14 -1.74 9.80 -39.67 -0.39 -2.13 15 8 C 0.04 0.59 6.36 -38.93 -0.25 0.35 15 9 Cl -0.02 -0.42 25.99 -51.86 -1.35 -1.77 15 10 C -0.09 -1.82 5.87 -105.01 -0.62 -2.43 15 11 C 0.42 10.64 7.83 34.56 0.27 10.91 15 12 O -0.53 -13.93 13.19 -19.27 -0.25 -14.19 15 13 O -0.20 -5.76 8.98 -21.67 -0.19 -5.96 15 14 C -0.37 -10.78 9.65 30.94 0.30 -10.48 15 15 H 0.10 2.93 6.86 -52.49 -0.36 2.57 15 16 C 0.04 1.13 5.50 -17.52 -0.10 1.04 15 17 N -0.85 -24.70 13.67 55.49 0.76 -23.94 15 18 Si 0.95 21.04 29.55 -169.99 -5.02 16.01 15 19 H -0.26 -5.78 7.11 56.52 0.40 -5.37 15 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 22 C 0.00 0.05 9.16 -38.74 -0.35 -0.31 15 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 15 24 H 0.10 0.55 8.14 -51.93 -0.42 0.13 15 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 15 26 H 0.15 1.29 7.60 -52.48 -0.40 0.89 15 27 H 0.15 1.35 8.06 -52.48 -0.42 0.92 15 28 H 0.27 7.20 8.31 -40.82 -0.34 6.87 15 29 H 0.16 3.44 7.19 -52.48 -0.38 3.06 15 LS Contribution 289.16 15.07 4.36 4.36 Total: -1.00 -33.36 289.16 -5.16 -38.52 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -1.96 Total: -1.67 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -0.79 Total: 2.75 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.76 Total: -23.94 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -1.16 Total: -34.25 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.35 Total: -1.77 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.36 -5.16 -38.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811291374.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.161 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds