Wall clock time and date at job start Tue Mar 31 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00078 * 2 1 4 4 H 1.48510 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47486 * 300.00313 * 3 2 1 6 6 H 1.48507 * 109.46980 * 60.00340 * 3 2 1 7 7 C 1.37873 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00190 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00194 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47559 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00057 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46994 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.47103 * 64.99549 * 12 11 10 14 14 C 1.34724 * 116.99679 * 179.97438 * 13 12 11 15 15 O 1.21477 * 120.00240 * 0.02562 * 14 13 12 16 16 C 1.47661 * 119.99613 * 180.02562 * 14 13 12 17 17 C 1.39666 * 120.13814 * 0.24974 * 16 14 13 18 18 C 1.37881 * 119.86222 * 180.23321 * 17 16 14 19 19 C 1.38531 * 120.13454 * 359.51510 * 18 17 16 20 20 Cl 1.73598 * 119.86114 * 180.27825 * 19 18 17 21 21 C 1.38516 * 120.27481 * 0.25919 * 19 18 17 22 22 C 1.37884 * 120.13927 * 359.97438 * 21 19 18 23 23 H 0.96998 * 119.99173 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47183 * 60.00051 * 9 7 2 25 25 H 1.09005 * 109.46815 * 300.00326 * 9 7 2 26 26 H 1.08992 * 109.47690 * 59.99817 * 11 10 9 27 27 H 1.09001 * 109.46998 * 299.99624 * 11 10 9 28 28 H 1.09005 * 109.47024 * 304.99710 * 12 11 10 29 29 H 1.09000 * 109.46974 * 184.99933 * 12 11 10 30 30 H 1.08004 * 120.07234 * 0.02562 * 17 16 14 31 31 H 1.08002 * 119.93580 * 179.79899 * 18 17 16 32 32 H 1.08000 * 119.93155 * 180.02562 * 21 19 18 33 33 H 1.07993 * 120.07063 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 8 3.3994 -5.8892 1.2389 14 6 4.3971 -6.7803 1.3986 15 8 4.6332 -7.5908 0.5251 16 6 5.2037 -6.7717 2.6354 17 6 4.9314 -5.8445 3.6437 18 6 5.6912 -5.8384 4.7943 19 6 6.7165 -6.7560 4.9555 20 17 7.6640 -6.7467 6.4100 21 6 6.9884 -7.6812 3.9611 22 6 6.2388 -7.6943 2.8039 23 1 -0.4849 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 0.9452 -4.9822 -0.8912 27 1 0.9446 -4.9827 0.8887 28 1 3.3215 -5.7953 -0.8436 29 1 2.1819 -6.9374 -0.0917 30 1 4.1295 -5.1315 3.5212 31 1 5.4838 -5.1198 5.5734 32 1 7.7887 -8.3943 4.0927 33 1 6.4515 -8.4163 2.0295 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815172983.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:32 Heat of formation + Delta-G solvation = -120.240716 kcal Electronic energy + Delta-G solvation = -18803.034627 eV Core-core repulsion = 15433.759041 eV Total energy + Delta-G solvation = -3369.275587 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61434 -39.10386 -37.13577 -36.76283 -36.04926 -32.80782 -31.67852 -31.41691 -29.96134 -26.98313 -24.70062 -23.16852 -22.48672 -22.10601 -20.95084 -18.30653 -17.38155 -16.66095 -16.54649 -16.29994 -15.54088 -15.34546 -14.92629 -14.63980 -14.34261 -13.94680 -13.85494 -13.67958 -12.99297 -12.83175 -12.39795 -12.04388 -11.87016 -11.79732 -11.47652 -11.18678 -10.97386 -10.90423 -10.78688 -10.53671 -10.43302 -10.07559 -9.46181 -9.16768 -9.14260 -8.91546 -8.24840 -6.14734 -4.16457 0.26143 0.92242 1.68937 2.33057 2.63385 3.27291 3.33987 3.39365 3.40501 4.29900 4.38716 4.49052 4.55386 4.70005 4.87128 4.96065 5.16995 5.22106 5.25103 5.41437 5.58036 5.67324 5.80566 5.82392 5.87673 5.97231 6.06347 6.30580 6.47173 7.01856 7.36294 7.72248 7.75918 8.09402 8.48650 8.96486 9.48622 10.96844 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.016227 B = 0.003335 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.130665 B = 8392.838534 C = 9763.779198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.335 6.335 14 C 0.507 3.493 15 O -0.511 6.511 16 C -0.118 4.118 17 C -0.044 4.044 18 C -0.123 4.123 19 C -0.005 4.005 20 Cl -0.064 7.064 21 C -0.126 4.126 22 C -0.044 4.044 23 H 0.264 0.736 24 H 0.006 0.994 25 H 0.007 0.993 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.155 0.845 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.016 -16.162 9.673 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.251 6.251 14 C 0.352 3.648 15 O -0.401 6.401 16 C -0.119 4.119 17 C -0.062 4.062 18 C -0.142 4.142 19 C -0.032 4.032 20 Cl -0.035 7.035 21 C -0.144 4.144 22 C -0.063 4.063 23 H 0.073 0.927 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.173 0.827 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.174 -16.219 9.517 21.875 hybrid contribution 0.045 0.829 -0.028 0.831 sum 11.219 -15.390 9.489 21.278 Atomic orbital electron populations 1.69972 1.06107 1.27116 1.50574 1.24949 0.94988 0.99470 0.95091 0.86280 0.80046 0.82519 0.77655 1.19448 1.20825 1.20791 1.21086 0.94144 0.89268 1.50797 0.91442 1.20248 0.88738 0.83489 0.95531 1.87919 1.35330 1.12600 1.95235 1.22330 0.93191 0.85446 1.00683 1.23275 0.93626 0.98964 0.83938 1.86633 1.43123 1.53477 1.41828 1.21035 0.78934 0.78330 0.86470 1.90817 1.68133 1.38214 1.42974 1.19301 0.98621 1.00217 0.93796 1.21640 0.97795 0.95913 0.90841 1.21136 0.94902 0.99056 0.99065 1.21299 0.94833 0.97918 0.89171 1.98392 1.71359 1.97974 1.35766 1.20989 1.01350 0.99408 0.92686 1.21237 0.91874 0.96385 0.96784 0.92666 0.97587 0.97477 0.91799 0.93118 0.90283 0.90227 0.82727 0.83805 0.83997 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.51 -15.00 9.43 -34.44 -0.32 -15.33 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.19 5.22 5.69 36.01 0.20 5.42 16 10 O -0.39 -9.26 10.30 -38.80 -0.40 -9.66 16 11 C 0.06 1.08 6.33 37.16 0.24 1.32 16 12 C 0.08 1.16 5.85 37.16 0.22 1.38 16 13 O -0.33 -5.41 9.44 -43.34 -0.41 -5.82 16 14 C 0.51 7.53 7.90 34.58 0.27 7.80 16 15 O -0.51 -8.34 16.14 -19.25 -0.31 -8.65 16 16 C -0.12 -1.44 5.87 -104.98 -0.62 -2.06 16 17 C -0.04 -0.48 9.61 -39.18 -0.38 -0.86 16 18 C -0.12 -1.18 9.81 -39.60 -0.39 -1.57 16 19 C -0.01 -0.05 6.33 -39.37 -0.25 -0.30 16 20 Cl -0.06 -0.54 28.95 -51.86 -1.50 -2.04 16 21 C -0.13 -1.09 9.81 -39.61 -0.39 -1.48 16 22 C -0.04 -0.45 9.59 -39.18 -0.38 -0.82 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.16 1.75 7.61 -52.48 -0.40 1.35 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.15 1.35 7.65 -52.49 -0.40 0.95 16 LS Contribution 316.99 15.07 4.78 4.78 Total: -1.00 -32.21 316.99 -7.74 -39.95 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -3.73 Total: -4.37 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.89 Total: -4.99 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.74 Total: -25.81 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -1.12 Total: -24.12 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.21 -7.74 -39.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815172983.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.286 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds