Wall clock time and date at job start Tue Mar 31 2020 05:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99783 * 2 1 4 4 H 1.48502 * 109.46893 * 270.00126 * 3 2 1 5 5 H 1.48498 * 109.47443 * 30.00230 * 3 2 1 6 6 H 1.48507 * 109.47081 * 150.00499 * 3 2 1 7 7 C 1.37879 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99606 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00081 * 179.97438 * 7 2 1 10 10 O 1.42906 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00027 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47078 * 179.97438 * 11 10 9 13 13 O 1.45208 * 109.47016 * 65.00284 * 12 11 10 14 14 C 1.34702 * 116.99810 * 179.97438 * 13 12 11 15 15 O 1.21472 * 120.00774 * 359.97438 * 14 13 12 16 16 C 1.47737 * 119.99935 * 180.02562 * 14 13 12 17 17 C 1.39651 * 120.13996 * 359.97313 * 16 14 13 18 18 C 1.37932 * 119.86941 * 179.97438 * 17 16 14 19 19 C 1.38361 * 120.16652 * 0.07152 * 18 17 16 20 20 C 1.38449 * 120.29471 * 359.97438 * 19 18 17 21 21 Cl 1.73597 * 119.94267 * 180.02562 * 20 19 18 22 22 C 1.38095 * 120.12397 * 359.97438 * 20 19 18 23 23 H 0.97001 * 120.00171 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.46727 * 60.00320 * 9 7 2 25 25 H 1.08995 * 109.46953 * 299.99992 * 9 7 2 26 26 H 1.08999 * 109.46968 * 59.99928 * 11 10 9 27 27 H 1.09001 * 109.46897 * 300.00365 * 11 10 9 28 28 H 1.08994 * 109.47384 * 305.00273 * 12 11 10 29 29 H 1.08994 * 109.47107 * 184.99639 * 12 11 10 30 30 H 1.07992 * 120.06165 * 0.02562 * 17 16 14 31 31 H 1.07997 * 119.91159 * 180.02562 * 18 17 16 32 32 H 1.08005 * 119.85244 * 179.97438 * 19 18 17 33 33 H 1.07994 * 120.08786 * 179.75066 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 8 3.9879 -2.5413 -0.0010 11 6 5.4125 -2.6541 -0.0009 12 6 5.8070 -4.1323 -0.0002 13 8 5.3728 -4.7497 -1.2407 14 6 5.6456 -6.0592 -1.4001 15 8 6.2305 -6.6686 -0.5272 16 6 5.2343 -6.7540 -2.6374 17 6 4.5622 -6.0563 -3.6431 18 6 4.1812 -6.7104 -4.7962 19 6 4.4622 -8.0555 -4.9576 20 6 5.1273 -8.7542 -3.9645 21 17 5.4757 -10.4415 -4.1769 22 6 5.5152 -8.1110 -2.8056 23 1 -0.4850 0.8400 0.0004 24 1 3.8751 -0.6804 0.8889 25 1 3.8745 -0.6799 -0.8911 26 1 5.8152 -2.1705 0.8890 27 1 5.8152 -2.1705 -0.8909 28 1 5.3312 -4.6349 0.8418 29 1 6.8897 -4.2193 0.0894 30 1 4.3418 -5.0064 -3.5187 31 1 3.6618 -6.1714 -5.5746 32 1 4.1612 -8.5628 -5.8624 33 1 6.0304 -8.6575 -2.0296 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815173033.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:18 Heat of formation + Delta-G solvation = -114.418430 kcal Electronic energy + Delta-G solvation = -18854.218369 eV Core-core repulsion = 15485.195256 eV Total energy + Delta-G solvation = -3369.023114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.64973 -39.11723 -37.25545 -36.76243 -36.16130 -32.74490 -31.86088 -31.19276 -30.18877 -27.65204 -24.90424 -22.99696 -22.37879 -21.90672 -21.02864 -18.39530 -17.35653 -16.93268 -16.56810 -16.23791 -15.56746 -15.41493 -15.27533 -14.82416 -14.43908 -14.11535 -13.87773 -13.52783 -13.08772 -12.65180 -12.49832 -12.22569 -11.86606 -11.80757 -11.74967 -11.32074 -11.21448 -10.92972 -10.73489 -10.56701 -10.51327 -9.91149 -9.48343 -9.24774 -9.13217 -8.95591 -8.55122 -6.15575 -4.15233 0.33098 0.82564 1.69849 2.33831 2.61898 3.21152 3.28459 3.28994 3.38101 4.31107 4.35949 4.43681 4.45544 4.67680 4.81806 4.93859 5.08225 5.15416 5.18555 5.32466 5.43997 5.62986 5.67405 5.76609 5.88784 5.92308 5.97770 6.30489 6.41123 6.51000 6.92210 7.53236 7.68313 7.90914 8.59094 8.95680 9.42951 10.97379 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.026201 B = 0.003043 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.394335 B = 9199.835539 C = 9890.432203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.376 6.376 11 C 0.057 3.943 12 C 0.075 3.925 13 O -0.335 6.335 14 C 0.509 3.491 15 O -0.509 6.509 16 C -0.110 4.110 17 C -0.052 4.052 18 C -0.118 4.118 19 C -0.078 4.078 20 C -0.051 4.051 21 Cl -0.064 7.064 22 C -0.049 4.049 23 H 0.267 0.733 24 H 0.004 0.996 25 H 0.001 0.999 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.152 0.848 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.234 -14.870 -9.856 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.295 6.295 11 C -0.020 4.020 12 C 0.002 3.998 13 O -0.250 6.250 14 C 0.354 3.646 15 O -0.399 6.399 16 C -0.111 4.111 17 C -0.070 4.070 18 C -0.136 4.136 19 C -0.096 4.096 20 C -0.078 4.078 21 Cl -0.035 7.035 22 C -0.068 4.068 23 H 0.077 0.923 24 H 0.022 0.978 25 H 0.019 0.981 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.170 0.830 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 13.142 -15.189 -9.580 22.253 hybrid contribution 0.609 1.004 0.153 1.184 sum 13.750 -14.185 -9.427 21.889 Atomic orbital electron populations 1.69871 1.06070 1.27150 1.50150 1.24769 0.94814 0.98758 0.94603 0.86848 0.80324 0.83743 0.78794 1.19880 1.20751 1.19110 1.20875 0.88176 0.95382 1.51416 0.89912 1.20637 0.96336 0.79201 0.94492 1.87982 1.16602 1.29808 1.95096 1.22408 0.86184 0.92695 1.00760 1.23240 0.99290 0.93138 0.84154 1.86620 1.73459 1.23234 1.41728 1.20974 0.76071 0.81159 0.86396 1.90825 1.39006 1.67153 1.42927 1.19060 1.04623 0.93429 0.94006 1.21788 0.92210 1.01511 0.91476 1.21214 1.00364 0.93767 0.98292 1.21365 0.95682 0.94485 0.98116 1.20707 1.03978 0.86347 0.96742 1.98383 1.93891 1.14031 1.97180 1.21113 0.96641 0.92807 0.96247 0.92302 0.97821 0.98145 0.91639 0.92954 0.90085 0.90064 0.83035 0.83814 0.84254 0.83462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.96 55.43 0.77 -26.49 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.52 -15.27 9.99 -34.44 -0.34 -15.61 16 8 H 0.08 2.67 8.06 -52.48 -0.42 2.24 16 9 C 0.17 4.16 4.76 36.01 0.17 4.34 16 10 O -0.38 -8.52 10.30 -38.80 -0.40 -8.92 16 11 C 0.06 0.94 6.33 37.15 0.24 1.18 16 12 C 0.08 1.11 5.85 37.15 0.22 1.33 16 13 O -0.33 -5.28 9.44 -43.28 -0.41 -5.69 16 14 C 0.51 7.56 7.90 34.61 0.27 7.84 16 15 O -0.51 -8.37 16.14 -19.24 -0.31 -8.68 16 16 C -0.11 -1.36 5.87 -104.98 -0.62 -1.98 16 17 C -0.05 -0.56 9.62 -39.17 -0.38 -0.94 16 18 C -0.12 -1.01 10.03 -39.65 -0.40 -1.41 16 19 C -0.08 -0.64 9.82 -39.46 -0.39 -1.03 16 20 C -0.05 -0.50 6.31 -39.56 -0.25 -0.75 16 21 Cl -0.06 -0.57 28.95 -51.86 -1.50 -2.07 16 22 C -0.05 -0.55 9.38 -39.13 -0.37 -0.92 16 23 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 25 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.15 1.66 7.61 -52.49 -0.40 1.26 16 31 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 32 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.15 1.61 7.65 -52.49 -0.40 1.21 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -32.86 313.40 -7.43 -40.29 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -3.69 Total: -3.49 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -1.94 Total: -5.94 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.77 Total: -26.49 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -1.12 Total: -23.29 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.86 -7.43 -40.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815173033.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.128 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds