Wall clock time and date at job start Tue Mar 31 2020 05:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99962 * 2 1 4 4 H 1.48494 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47165 * 300.00577 * 3 2 1 6 6 H 1.48507 * 109.46694 * 60.00005 * 3 2 1 7 7 C 1.37876 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00277 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99812 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46891 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99867 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46951 * 180.02562 * 11 10 9 13 13 O 1.45203 * 109.47059 * 65.00416 * 12 11 10 14 14 C 1.34721 * 116.99758 * 179.97438 * 13 12 11 15 15 O 1.21477 * 120.00096 * 359.97438 * 14 13 12 16 16 C 1.47647 * 119.99787 * 179.97438 * 14 13 12 17 17 C 1.39675 * 120.16042 * 359.97438 * 16 14 13 18 18 C 1.37883 * 119.85920 * 179.97438 * 17 16 14 19 19 C 1.38429 * 120.19076 * 359.97438 * 18 17 16 20 20 C 1.38275 * 120.32722 * 359.97438 * 19 18 17 21 21 C 1.38151 * 120.13481 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.09543 * 179.97438 * 21 20 19 23 23 H 0.97003 * 120.00272 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46749 * 59.99815 * 9 7 2 25 25 H 1.08998 * 109.46918 * 299.99959 * 9 7 2 26 26 H 1.08997 * 109.46818 * 60.00224 * 11 10 9 27 27 H 1.09004 * 109.47264 * 300.00273 * 11 10 9 28 28 H 1.08997 * 109.47198 * 305.00013 * 12 11 10 29 29 H 1.09003 * 109.46822 * 184.99752 * 12 11 10 30 30 H 1.07997 * 120.07582 * 359.97438 * 17 16 14 31 31 H 1.08004 * 119.90580 * 180.02562 * 18 17 16 32 32 H 1.08005 * 119.84135 * 180.02562 * 19 18 17 33 33 H 1.07994 * 119.93483 * 179.75102 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 2.1797 -3.5852 -0.0027 11 6 1.5652 -4.8754 -0.0032 12 6 2.6482 -5.9561 -0.0036 13 8 3.3993 -5.8890 1.2372 14 6 4.3971 -6.7800 1.3971 15 8 4.6328 -7.5911 0.5240 16 6 5.2040 -6.7707 2.6335 17 6 4.9362 -5.8393 3.6393 18 6 5.6934 -5.8365 4.7916 19 6 6.7170 -6.7541 4.9542 20 6 6.9882 -7.6803 3.9640 21 6 6.2381 -7.6952 2.8040 22 17 6.5799 -8.8581 1.5612 23 1 -0.4851 0.8400 0.0004 24 1 0.6247 -2.5562 -0.8920 25 1 0.6241 -2.5575 0.8880 26 1 0.9448 -4.9819 -0.8931 27 1 0.9453 -4.9830 0.8869 28 1 3.3218 -5.7952 -0.8453 29 1 2.1822 -6.9374 -0.0936 30 1 4.1378 -5.1227 3.5147 31 1 5.4867 -5.1168 5.5700 32 1 7.3063 -6.7471 5.8593 33 1 7.7909 -8.3907 4.0958 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815173415.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:33 Heat of formation + Delta-G solvation = -109.738295 kcal Electronic energy + Delta-G solvation = -19090.142280 eV Core-core repulsion = 15721.322112 eV Total energy + Delta-G solvation = -3368.820168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52647 -38.99869 -37.02339 -36.58459 -35.92834 -32.79621 -31.89748 -31.01567 -29.95624 -26.96470 -24.71506 -23.03124 -22.44823 -22.05891 -20.94902 -18.25613 -17.20604 -16.54959 -16.48565 -16.21084 -15.50886 -15.32115 -14.94837 -14.60571 -14.32394 -14.14172 -13.73922 -13.57217 -12.79842 -12.63994 -12.14332 -12.00563 -11.75174 -11.69882 -11.49156 -11.35730 -10.90953 -10.87432 -10.73279 -10.37057 -10.09405 -9.92487 -9.42290 -9.12938 -9.05893 -8.89661 -8.23101 -6.13582 -4.15222 0.37071 0.88281 1.90685 2.47806 2.69075 3.27811 3.34437 3.41102 3.42720 4.31231 4.38640 4.54355 4.63487 4.73188 4.91545 5.00823 5.17208 5.23194 5.23624 5.46653 5.53781 5.75261 5.86244 5.86400 5.93810 6.03045 6.10052 6.37532 6.55190 7.03848 7.38069 7.76831 7.82994 8.10947 8.50785 8.97911 9.49787 10.98014 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.021159 B = 0.003508 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.987347 B = 7979.575972 C = 8794.254265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.077 3.923 13 O -0.337 6.337 14 C 0.500 3.500 15 O -0.492 6.492 16 C -0.116 4.116 17 C -0.045 4.045 18 C -0.130 4.130 19 C -0.076 4.076 20 C -0.128 4.128 21 C 0.016 3.984 22 Cl -0.034 7.034 23 H 0.264 0.736 24 H 0.006 0.994 25 H 0.007 0.993 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.153 0.847 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.187 -16.294 9.711 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.003 3.997 13 O -0.253 6.253 14 C 0.344 3.656 15 O -0.381 6.381 16 C -0.118 4.118 17 C -0.064 4.064 18 C -0.148 4.148 19 C -0.094 4.094 20 C -0.147 4.147 21 C -0.012 4.012 22 Cl -0.004 7.004 23 H 0.073 0.927 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.171 0.829 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.295 -16.472 9.292 22.028 hybrid contribution -0.011 0.734 -0.258 0.778 sum 11.284 -15.738 9.034 21.369 Atomic orbital electron populations 1.69967 1.06110 1.27103 1.50611 1.24945 0.94973 0.99447 0.95104 0.86285 0.80055 0.82547 0.77647 1.19451 1.20825 1.20802 1.21090 0.94145 0.89281 1.50752 0.91449 1.20244 0.88749 0.83518 0.95514 1.87922 1.35311 1.12611 1.95230 1.22330 0.93227 0.85438 1.00615 1.23238 0.93579 0.98862 0.84006 1.86616 1.43225 1.53657 1.41779 1.20915 0.79307 0.78848 0.86545 1.90899 1.67366 1.37277 1.42545 1.19016 0.98128 0.99740 0.94956 1.21673 0.98132 0.95363 0.91209 1.21330 0.95806 0.99534 0.98098 1.21408 0.96381 0.93310 0.98347 1.21034 1.00501 1.00935 0.92243 1.21074 0.95694 0.92617 0.91787 1.98421 1.93889 1.56213 1.51912 0.92675 0.97614 0.97478 0.91849 0.93176 0.90343 0.90291 0.82922 0.84302 0.84475 0.84165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -15.09 9.43 -34.44 -0.32 -15.42 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.19 5.27 5.69 36.01 0.20 5.47 16 10 O -0.39 -9.41 10.30 -38.79 -0.40 -9.81 16 11 C 0.06 1.12 6.33 37.16 0.24 1.35 16 12 C 0.08 1.23 5.85 37.16 0.22 1.44 16 13 O -0.34 -5.68 9.44 -43.33 -0.41 -6.09 16 14 C 0.50 7.95 7.89 34.57 0.27 8.22 16 15 O -0.49 -8.45 13.76 -19.25 -0.26 -8.72 16 16 C -0.12 -1.56 5.88 -104.96 -0.62 -2.17 16 17 C -0.05 -0.52 9.62 -39.17 -0.38 -0.90 16 18 C -0.13 -1.12 10.03 -39.64 -0.40 -1.51 16 19 C -0.08 -0.57 10.04 -39.50 -0.40 -0.97 16 20 C -0.13 -1.13 9.82 -39.60 -0.39 -1.52 16 21 C 0.02 0.19 6.35 -39.05 -0.25 -0.06 16 22 Cl -0.03 -0.43 26.03 -51.86 -1.35 -1.78 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.15 1.78 7.61 -52.49 -0.40 1.38 16 31 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 33 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 312.81 15.07 4.71 4.71 Total: -1.00 -33.09 312.81 -7.66 -40.75 By element: Atomic # 1 Polarization: -1.52 SS G_CDS: -3.75 Total: -5.27 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -1.92 Total: -4.54 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -1.07 Total: -24.62 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.35 Total: -1.78 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.09 -7.66 -40.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815173415.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.992 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds