Wall clock time and date at job start Tue Mar 31 2020 05:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00343 * 2 1 4 4 H 1.48506 * 109.46818 * 270.00094 * 3 2 1 5 5 H 1.48498 * 109.47067 * 29.99918 * 3 2 1 6 6 H 1.48496 * 109.47458 * 150.00295 * 3 2 1 7 7 C 1.37885 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99844 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99649 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47405 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.46884 * 64.99626 * 12 11 10 14 14 C 1.34773 * 117.00235 * 180.02562 * 13 12 11 15 15 O 1.21541 * 119.99391 * 359.97438 * 14 13 12 16 16 C 1.47224 * 120.00166 * 180.02562 * 14 13 12 17 17 C 1.36846 * 122.90915 * 0.02834 * 16 14 13 18 18 S 1.70562 * 110.74765 * 180.02562 * 17 16 14 19 19 C 1.75686 * 91.92676 * 359.97438 * 18 17 16 20 20 C 1.41452 * 125.11908 * 180.02562 * 19 18 17 21 21 O 1.21425 * 119.99868 * 179.97438 * 20 19 18 22 22 C 1.36367 * 109.75761 * 359.73959 * 19 18 17 23 23 H 0.97004 * 120.00403 * 359.97438 * 1 2 3 24 24 H 1.08990 * 109.47088 * 60.00044 * 9 7 2 25 25 H 1.08992 * 109.46694 * 299.99407 * 9 7 2 26 26 H 1.09002 * 109.47445 * 59.99875 * 11 10 9 27 27 H 1.09002 * 109.47167 * 299.99793 * 11 10 9 28 28 H 1.09002 * 109.47398 * 184.99964 * 12 11 10 29 29 H 1.09001 * 109.47194 * 305.00145 * 12 11 10 30 30 H 1.07998 * 124.62490 * 0.02562 * 17 16 14 31 31 H 1.08002 * 120.00361 * 359.97438 * 20 19 18 32 32 H 1.08002 * 123.30949 * 180.24971 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9563 0.0030 13 8 3.3991 -5.8879 1.2437 14 6 4.3978 -6.7785 1.4041 15 8 4.6340 -7.5904 0.5310 16 6 5.2019 -6.7687 2.6373 17 6 4.9868 -5.8830 3.6581 18 16 6.0922 -6.1468 4.9300 19 6 6.8562 -7.4746 4.0698 20 6 7.9430 -8.2396 4.5539 21 8 8.4000 -9.1398 3.8793 22 6 6.2395 -7.6607 2.8679 23 1 -0.4851 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 0.9451 -4.9831 -0.8877 27 1 0.9444 -4.9818 0.8922 28 1 2.1818 -6.9376 -0.0860 29 1 3.3214 -5.7962 -0.8388 30 1 4.2215 -5.1209 3.6583 31 1 8.3665 -8.0229 5.5236 32 1 6.5324 -8.4247 2.1630 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815219217.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:27 Heat of formation + Delta-G solvation = -135.157696 kcal Electronic energy + Delta-G solvation = -18726.406374 eV Core-core repulsion = 15358.527645 eV Total energy + Delta-G solvation = -3367.878729 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.54887 -39.56046 -37.62918 -36.84201 -35.98745 -32.82503 -31.18843 -29.98658 -27.02649 -26.31628 -25.00881 -22.51644 -22.13083 -20.95974 -19.60950 -18.38809 -17.78810 -16.66972 -16.56423 -16.30952 -15.80844 -15.41830 -15.24153 -14.84708 -14.67451 -14.38115 -13.79200 -13.33827 -13.24720 -13.21635 -12.69611 -12.56956 -12.01700 -11.64896 -11.49246 -10.99173 -10.89318 -10.82360 -10.56050 -10.44409 -10.31449 -10.09621 -9.38113 -9.18349 -9.11794 -8.93250 -8.26962 -6.16764 -4.18730 -0.20484 0.94652 1.07459 1.30377 2.33730 2.66020 2.96306 3.26561 3.31785 3.36746 3.99402 4.27754 4.56316 4.66345 4.75882 4.85435 4.92004 5.17086 5.19923 5.34092 5.41376 5.63197 5.71569 5.81133 5.90013 6.02933 6.46830 6.99782 7.00857 7.34138 7.72491 7.74604 8.07217 8.46589 8.93816 9.46281 10.94748 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.020820 B = 0.003259 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.544385 B = 8589.601483 C = 9513.728270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.076 3.924 13 O -0.336 6.336 14 C 0.526 3.474 15 O -0.509 6.509 16 C -0.161 4.161 17 C -0.154 4.154 18 S 0.283 5.717 19 C -0.347 4.347 20 C 0.411 3.589 21 O -0.458 6.458 22 C 0.009 3.991 23 H 0.265 0.735 24 H 0.006 0.994 25 H 0.007 0.993 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.194 0.806 31 H 0.105 0.895 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.010 -13.800 11.731 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.252 6.252 14 C 0.368 3.632 15 O -0.399 6.399 16 C -0.175 4.175 17 C -0.294 4.294 18 S 0.551 5.449 19 C -0.465 4.465 20 C 0.270 3.730 21 O -0.333 6.333 22 C -0.022 4.022 23 H 0.074 0.926 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.211 0.789 31 H 0.122 0.878 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 10.576 -13.645 12.523 21.328 hybrid contribution -0.544 0.389 -1.622 1.755 sum 10.033 -13.256 10.900 19.879 Atomic orbital electron populations 1.69952 1.06120 1.27259 1.50415 1.24950 0.94984 0.99465 0.95065 0.86328 0.79650 0.82167 0.78304 1.20420 1.21037 1.19602 1.21045 0.94090 0.89283 1.51019 0.91515 1.20238 0.88733 0.83474 0.95526 1.87919 1.35344 1.12616 1.95238 1.22332 0.93187 0.85421 1.00677 1.23273 0.93608 0.98968 0.83925 1.86626 1.43122 1.53572 1.41899 1.20364 0.78707 0.78359 0.85761 1.90850 1.68149 1.38138 1.42801 1.18341 1.01748 1.01835 0.95619 1.26651 1.03455 1.02024 0.97278 1.83011 1.21482 1.24461 1.15940 1.24456 1.10162 1.09297 1.02565 1.21707 0.80143 0.80404 0.90778 1.90620 1.56711 1.26898 1.59088 1.20842 0.90315 0.96066 0.94985 0.92584 0.97579 0.97502 0.91764 0.93158 0.90204 0.90264 0.78921 0.87833 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.28 55.43 0.74 -25.66 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.96 9.43 -34.44 -0.32 -15.28 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.19 5.20 5.69 36.01 0.20 5.41 16 10 O -0.39 -9.23 10.30 -38.80 -0.40 -9.63 16 11 C 0.06 1.09 6.33 37.16 0.24 1.32 16 12 C 0.08 1.17 5.86 37.16 0.22 1.39 16 13 O -0.34 -5.45 9.81 -43.48 -0.43 -5.88 16 14 C 0.53 8.00 7.92 34.38 0.27 8.27 16 15 O -0.51 -8.74 16.48 -19.30 -0.32 -9.06 16 16 C -0.16 -1.97 5.81 -106.56 -0.62 -2.59 16 17 C -0.15 -1.50 10.57 30.23 0.32 -1.18 16 18 S 0.28 1.87 23.02 -107.50 -2.47 -0.61 16 19 C -0.35 -3.05 6.22 -39.03 -0.24 -3.29 16 20 C 0.41 3.32 11.46 31.96 0.37 3.69 16 21 O -0.46 -5.62 17.51 5.43 0.10 -5.53 16 22 C 0.01 0.10 9.47 -40.06 -0.38 -0.28 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.19 1.79 8.00 -52.49 -0.42 1.37 16 31 H 0.11 0.40 8.06 -52.49 -0.42 -0.03 16 32 H 0.16 1.96 7.92 -52.49 -0.42 1.55 16 LS Contribution 314.41 15.07 4.74 4.74 Total: -1.00 -34.55 314.41 -6.46 -41.00 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: -3.34 Total: -4.78 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -0.05 Total: -1.02 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -1.05 Total: -30.09 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.47 Total: -0.61 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.55 -6.46 -41.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815219217.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.155 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds