Wall clock time and date at job start Tue Mar 31 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35970 * 117.00405 * 2 1 4 4 C 1.38577 * 120.06780 * 0.02768 * 3 2 1 5 5 C 1.38321 * 119.98686 * 179.97438 * 4 3 2 6 6 Cl 1.73597 * 119.93787 * 179.97438 * 5 4 3 7 7 C 1.38377 * 120.12393 * 359.97438 * 5 4 3 8 8 C 1.38215 * 120.13878 * 359.75342 * 7 5 4 9 9 C 1.38583 * 120.01064 * 0.49987 * 8 7 5 10 10 O 1.36012 * 120.06281 * 179.77301 * 9 8 7 11 11 C 1.34232 * 116.99737 * 261.11041 * 10 9 8 12 12 O 1.20828 * 120.00280 * 5.41269 * 11 10 9 13 13 C 1.50699 * 119.99885 * 185.41175 * 11 10 9 14 14 C 1.53001 * 109.47341 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.46962 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00241 * 359.97438 * 15 14 13 17 17 C 1.37886 * 119.99801 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99781 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99877 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47352 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46907 * 119.99995 * 19 17 15 22 22 H 1.48500 * 109.46908 * 239.99911 * 19 17 15 23 23 H 1.09007 * 109.46712 * 59.99357 * 1 2 3 24 24 H 1.08994 * 109.47686 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46888 * 300.00338 * 1 2 3 26 26 H 1.08002 * 120.00255 * 359.94829 * 4 3 2 27 27 H 1.08004 * 119.92978 * 180.02562 * 7 5 4 28 28 H 1.08002 * 119.99583 * 180.25323 * 8 7 5 29 29 H 1.09003 * 109.47275 * 300.00170 * 13 11 10 30 30 H 1.08998 * 109.47370 * 59.99748 * 13 11 10 31 31 H 1.08994 * 109.46731 * 299.99598 * 14 13 11 32 32 H 1.08998 * 109.47284 * 59.99463 * 14 13 11 33 33 H 0.97002 * 119.99686 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2931 2.3746 0.0006 5 6 1.9229 3.6061 0.0011 6 17 0.9780 5.0624 0.0012 7 6 3.3047 3.6795 0.0016 8 6 4.0611 2.5227 0.0067 9 6 3.4360 1.2858 0.0009 10 8 4.1793 0.1468 0.0012 11 6 4.3627 -0.4616 -1.1812 12 8 3.9605 0.0565 -2.1960 13 6 5.0702 -1.7907 -1.2430 14 6 5.1467 -2.2606 -2.6971 15 6 5.8548 -3.5895 -2.7589 16 1 6.2146 -4.0524 -1.8519 17 6 6.0432 -4.2144 -3.9735 18 7 5.6046 -3.6509 -5.0779 19 14 6.9215 -5.8612 -4.0502 20 1 7.3128 -6.2779 -2.6797 21 1 6.0135 -6.8796 -4.6363 22 1 8.1359 -5.7356 -4.8956 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2145 2.3195 0.0002 27 1 3.7932 4.6427 0.0024 28 1 5.1394 2.5826 0.0112 29 1 6.0783 -1.6848 -0.8423 30 1 4.5197 -2.5232 -0.6526 31 1 4.1388 -2.3666 -3.0981 32 1 5.6974 -1.5281 -3.2872 33 1 5.7369 -4.0907 -5.9323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817483737.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:06 Heat of formation + Delta-G solvation = -103.887149 kcal Electronic energy + Delta-G solvation = -19516.021296 eV Core-core repulsion = 16147.454853 eV Total energy + Delta-G solvation = -3368.566443 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.23466 -39.55817 -37.85768 -36.87152 -36.08457 -33.60672 -31.29985 -30.71810 -30.05564 -27.51257 -26.15875 -23.57967 -22.72445 -21.79751 -20.06365 -18.60016 -17.66922 -17.10077 -16.90131 -16.02055 -15.79012 -15.53116 -15.20456 -14.63982 -14.46086 -14.18911 -13.58271 -13.31377 -12.96458 -12.63038 -12.27969 -12.20793 -12.02723 -11.65147 -11.28732 -11.24844 -11.00666 -10.99101 -10.74498 -10.63699 -10.08052 -10.03618 -9.67523 -9.19028 -9.06018 -8.39326 -8.35213 -6.02784 -4.07696 0.71783 1.04261 1.79589 2.69246 2.90290 3.05567 3.30248 3.37559 3.41169 3.56244 4.42574 4.46543 4.67202 4.77868 4.89260 4.97752 5.05599 5.31963 5.32571 5.32813 5.50946 5.74475 5.88559 5.94157 6.09580 6.14754 6.26934 6.66133 6.85536 7.10722 7.65168 7.71002 7.96306 8.24042 8.39436 8.99430 9.56436 11.08230 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.032920 B = 0.003334 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.350677 B = 8397.536479 C = 8659.676114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.299 6.299 3 C 0.137 3.863 4 C -0.192 4.192 5 C 0.001 3.999 6 Cl -0.066 7.066 7 C -0.134 4.134 8 C -0.072 4.072 9 C 0.070 3.930 10 O -0.295 6.295 11 C 0.457 3.543 12 O -0.487 6.487 13 C -0.099 4.099 14 C 0.033 3.967 15 C -0.528 4.528 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.057 0.943 26 H 0.145 0.855 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.302 14.138 13.253 21.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.212 6.212 3 C 0.090 3.910 4 C -0.211 4.211 5 C -0.025 4.025 6 Cl -0.037 7.037 7 C -0.153 4.153 8 C -0.090 4.090 9 C 0.027 3.973 10 O -0.211 6.211 11 C 0.301 3.699 12 O -0.370 6.370 13 C -0.137 4.137 14 C -0.004 4.004 15 C -0.566 4.566 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.527 5.527 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.077 0.923 24 H 0.124 0.876 25 H 0.076 0.924 26 H 0.162 0.838 27 H 0.160 0.840 28 H 0.166 0.834 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.448 14.214 12.718 21.285 hybrid contribution -0.019 -0.514 -0.220 0.560 sum -9.467 13.700 12.498 20.821 Atomic orbital electron populations 1.23179 0.77792 1.04700 1.01404 1.86221 1.21863 1.25292 1.87803 1.19101 0.91218 0.84985 0.95679 1.20930 1.00782 0.90037 1.09377 1.20615 0.91869 0.87131 1.02916 1.98371 1.72629 1.35904 1.96800 1.20803 0.91243 0.99184 1.04080 1.21047 1.01096 0.89571 0.97296 1.17957 0.86554 0.86609 1.06160 1.84782 1.64634 1.35162 1.36569 1.25291 0.77010 0.87573 0.80042 1.90655 1.46720 1.64612 1.35045 1.21811 0.99664 0.87238 1.04938 1.19043 0.98566 0.96166 0.86649 1.21178 1.37664 1.04475 0.93257 0.92180 1.25026 0.95718 0.97914 0.95694 1.70006 1.45984 1.38681 0.98068 0.86478 0.79355 0.83664 0.78151 1.19612 1.20978 1.20958 0.92271 0.87570 0.92405 0.83784 0.83977 0.83374 0.88686 0.88580 0.95528 0.95524 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.50 10.23 -34.16 -0.35 -4.85 16 3 C 0.14 2.05 6.66 -39.11 -0.26 1.79 16 4 C -0.19 -2.33 8.82 -39.43 -0.35 -2.68 16 5 C 0.00 0.02 6.32 -39.50 -0.25 -0.23 16 6 Cl -0.07 -0.65 28.95 -51.86 -1.50 -2.15 16 7 C -0.13 -1.50 9.82 -39.54 -0.39 -1.89 16 8 C -0.07 -0.93 9.98 -39.46 -0.39 -1.32 16 9 C 0.07 1.12 4.96 -39.11 -0.19 0.92 16 10 O -0.29 -5.23 9.81 -29.13 -0.29 -5.52 16 11 C 0.46 9.30 7.82 36.01 0.28 9.59 16 12 O -0.49 -11.43 15.72 -18.75 -0.29 -11.73 16 13 C -0.10 -2.04 5.75 -27.88 -0.16 -2.20 16 14 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 15 C -0.53 -14.67 9.11 -34.44 -0.31 -14.99 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 19 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H 0.06 0.53 7.66 -51.92 -0.40 0.14 16 24 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 26 H 0.14 1.40 6.30 -52.49 -0.33 1.07 16 27 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 28 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 30 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 31 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 312.04 15.07 4.70 4.70 Total: -1.00 -33.11 312.04 -6.89 -39.99 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -3.62 Total: -3.12 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.25 Total: -7.47 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.93 Total: -22.10 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.11 -6.89 -39.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817483737.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.893 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds