Wall clock time and date at job start Tue Mar 31 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38765 * 120.79309 * 2 1 4 4 Br 1.89101 * 120.42540 * 359.75353 * 3 2 1 5 5 C 1.38272 * 119.14191 * 180.02562 * 3 2 1 6 6 N 1.31879 * 120.75310 * 0.02562 * 5 3 2 7 7 C 1.31848 * 121.73262 * 0.02562 * 6 5 3 8 8 C 1.38230 * 120.78896 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.41262 * 180.02562 * 8 7 6 10 10 N 1.46903 * 109.46750 * 259.96912 * 9 8 7 11 11 C 1.46904 * 110.99903 * 179.97438 * 10 9 8 12 12 C 1.50707 * 109.47070 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99548 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99849 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00401 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00000 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47445 * 89.99465 * 16 14 12 18 18 H 1.48494 * 109.47371 * 209.99859 * 16 14 12 19 19 H 1.48507 * 109.46792 * 329.99556 * 16 14 12 20 20 H 1.08993 * 109.47503 * 89.99671 * 1 2 3 21 21 H 1.08999 * 109.46876 * 209.99991 * 1 2 3 22 22 H 1.09003 * 109.47377 * 329.99544 * 1 2 3 23 23 H 1.08003 * 119.62109 * 180.02562 * 5 3 2 24 24 H 1.07997 * 119.60410 * 180.02562 * 7 6 5 25 25 H 1.08996 * 109.47420 * 19.97094 * 9 8 7 26 26 H 1.09002 * 109.47554 * 139.97947 * 9 8 7 27 27 H 1.00907 * 110.99798 * 56.04998 * 10 9 8 28 28 H 1.08991 * 109.47564 * 300.00398 * 11 10 9 29 29 H 1.09000 * 109.46743 * 60.00527 * 11 10 9 30 30 H 0.96993 * 120.00356 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.1920 0.0000 4 35 1.3069 2.8494 -0.0070 5 6 3.5995 1.1522 -0.0005 6 7 4.2409 -0.0001 -0.0016 7 6 3.5984 -1.1514 -0.0026 8 6 2.2166 -1.1906 -0.0032 9 6 1.4909 -2.5113 -0.0038 10 7 1.0443 -2.8239 -1.3679 11 6 0.3316 -4.1079 -1.4073 12 6 -0.1097 -4.3944 -2.8195 13 1 0.1163 -3.6926 -3.6087 14 6 -0.8028 -5.5519 -3.1038 15 7 -1.0784 -6.4062 -2.1426 16 14 -1.3491 -5.9074 -4.8544 17 1 -0.2855 -6.6656 -5.5606 18 1 -2.5972 -6.7117 -4.8298 19 1 -1.5992 -4.6273 -5.5644 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8899 0.5139 23 1 4.1602 2.0753 -0.0001 24 1 4.1583 -2.0749 -0.0030 25 1 2.1622 -3.2950 0.3473 26 1 0.6259 -2.4510 0.6567 27 1 1.8210 -2.8219 -2.0121 28 1 0.9951 -4.9024 -1.0661 29 1 -0.5413 -4.0590 -0.7564 30 1 -1.5657 -7.2207 -2.3427 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825720696.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:23 Heat of formation + Delta-G solvation = 27.572314 kcal Electronic energy + Delta-G solvation = -14330.613530 eV Core-core repulsion = 11785.612662 eV Total energy + Delta-G solvation = -2545.000868 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.40519 -35.86605 -34.08784 -32.97274 -31.69272 -29.83186 -27.96311 -27.02583 -24.66407 -22.31389 -21.71104 -21.06740 -17.04098 -16.64045 -16.36391 -15.11300 -14.71943 -14.52959 -14.23525 -13.58713 -13.28877 -12.80682 -12.70376 -12.54839 -12.31975 -11.67610 -11.45372 -11.24468 -11.14196 -10.80352 -10.71223 -10.38648 -10.07103 -9.47703 -9.32696 -9.17667 -8.86644 -8.54212 -7.44635 -6.09115 -4.11472 0.86411 1.17538 1.47712 3.28677 3.35110 3.39434 3.62545 4.36447 4.39833 4.66370 4.70635 4.85603 5.06437 5.27264 5.41066 5.51518 5.54280 5.75144 5.78912 5.94301 6.06032 6.24050 6.40491 6.57995 7.11628 7.30945 7.69832 7.81747 8.03417 8.24795 8.48285 8.97259 9.53958 11.01879 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.028821 B = 0.004020 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.292950 B = 6963.804890 C = 7471.985587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.012 3.988 3 C -0.153 4.153 4 Br -0.042 7.042 5 C 0.124 3.876 6 N -0.483 5.483 7 C 0.116 3.884 8 C -0.118 4.118 9 C 0.098 3.902 10 N -0.682 5.682 11 C 0.194 3.806 12 C -0.515 4.515 13 H 0.062 0.938 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 H 0.093 0.907 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.159 0.841 24 H 0.160 0.840 25 H 0.035 0.965 26 H 0.080 0.920 27 H 0.331 0.669 28 H -0.012 1.012 29 H 0.030 0.970 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.192 17.398 6.905 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.002 3.998 3 C -0.234 4.234 4 Br 0.043 6.957 5 C -0.035 4.035 6 N -0.192 5.192 7 C -0.041 4.041 8 C -0.122 4.122 9 C -0.032 4.032 10 N -0.312 5.312 11 C 0.068 3.932 12 C -0.554 4.554 13 H 0.080 0.920 14 C -0.144 4.144 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 H 0.112 0.888 21 H 0.101 0.899 22 H 0.089 0.911 23 H 0.177 0.823 24 H 0.177 0.823 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.147 0.853 28 H 0.006 0.994 29 H 0.048 0.952 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.083 18.190 6.993 20.415 hybrid contribution -0.265 -1.327 -0.822 1.584 sum 5.818 16.862 6.170 18.875 Atomic orbital electron populations 1.20999 0.88948 1.03368 1.04504 1.20149 0.97684 0.90504 0.91457 1.22884 0.96145 0.92250 1.12166 1.96659 1.77490 1.23874 1.97700 1.22697 0.89448 0.96923 0.94449 1.67811 1.40059 0.98078 1.13255 1.22865 0.91396 0.96263 0.93556 1.20985 0.94503 0.96191 1.00487 1.20821 0.97677 0.90207 0.94518 1.60762 1.29303 1.37813 1.03352 1.19589 0.93008 0.82781 0.97821 1.21149 1.35753 1.04742 0.93752 0.91952 1.24973 0.95964 0.96021 0.97481 1.69952 1.40687 1.11018 1.32020 0.86483 0.78070 0.78331 0.84450 1.20688 1.21202 1.19758 0.88818 0.89916 0.91119 0.82347 0.82291 0.94742 0.90156 0.85300 0.99391 0.95240 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 9.24 36.00 0.33 -1.29 16 2 C 0.01 0.17 5.92 -104.29 -0.62 -0.45 16 3 C -0.15 -1.98 6.24 -39.37 -0.25 -2.22 16 4 Br -0.04 -0.46 31.98 -68.01 -2.17 -2.64 16 5 C 0.12 1.57 10.95 -17.52 -0.19 1.38 16 6 N -0.48 -6.76 10.36 -13.23 -0.14 -6.90 16 7 C 0.12 1.59 10.83 -17.55 -0.19 1.40 16 8 C -0.12 -1.72 5.41 -104.49 -0.57 -2.29 16 9 C 0.10 1.59 5.27 -4.97 -0.03 1.56 16 10 N -0.68 -13.63 6.48 -116.33 -0.75 -14.39 16 11 C 0.19 4.84 5.44 -4.97 -0.03 4.81 16 12 C -0.52 -14.17 9.32 -34.44 -0.32 -14.49 16 13 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 16 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 21 H 0.08 1.13 6.27 -51.93 -0.33 0.81 16 22 H 0.07 0.82 6.79 -51.93 -0.35 0.47 16 23 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 24 H 0.16 1.88 8.04 -52.49 -0.42 1.46 16 25 H 0.03 0.54 8.02 -51.93 -0.42 0.13 16 26 H 0.08 1.30 6.53 -51.93 -0.34 0.96 16 27 H 0.33 6.49 8.71 -39.29 -0.34 6.15 16 28 H -0.01 -0.31 8.14 -51.93 -0.42 -0.73 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 280.00 15.07 4.22 4.22 Total: -1.00 -29.04 280.00 -8.51 -37.55 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -3.43 Total: 1.41 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -1.95 Total: -10.08 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.15 Total: -46.76 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.17 Total: -2.64 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.04 -8.51 -37.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825720696.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.122 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds