Wall clock time and date at job start Tue Mar 31 2020 06:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99688 * 2 1 4 4 C 1.50701 * 109.46893 * 269.99491 * 3 2 1 5 5 H 1.07994 * 119.99887 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99474 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00422 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99684 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47206 * 59.99723 * 8 6 4 10 10 H 1.48505 * 109.47134 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46789 * 299.99574 * 8 6 4 12 12 C 1.34771 * 120.00110 * 179.97438 * 2 1 3 13 13 O 1.21599 * 120.00140 * 180.02562 * 12 2 1 14 14 N 1.34780 * 119.99865 * 0.02562 * 12 2 1 15 15 C 1.39785 * 119.99838 * 179.97438 * 14 12 2 16 16 C 1.33447 * 124.74239 * 179.97438 * 15 14 12 17 17 C 1.44558 * 112.92700 * 179.97438 * 16 15 14 18 18 C 1.47012 * 123.45250 * 180.02562 * 17 16 15 19 19 O 1.21567 * 119.99523 * 359.97438 * 18 17 16 20 20 O 1.34802 * 120.00327 * 179.97438 * 18 17 16 21 21 C 1.36004 * 113.10151 * 0.02562 * 17 16 15 22 22 S 1.70419 * 110.94918 * 0.22871 * 21 17 16 23 23 H 1.08996 * 109.47302 * 270.00315 * 1 2 3 24 24 H 1.09007 * 109.46865 * 30.00522 * 1 2 3 25 25 H 1.09001 * 109.47089 * 149.99650 * 1 2 3 26 26 H 1.09004 * 109.47326 * 29.99886 * 3 2 1 27 27 H 1.09003 * 109.46774 * 149.99586 * 3 2 1 28 28 H 0.96999 * 120.00209 * 180.02562 * 7 6 4 29 29 H 0.96998 * 120.00236 * 0.02562 * 14 12 2 30 30 H 1.07999 * 123.53313 * 0.02762 * 16 15 14 31 31 H 0.96698 * 117.00295 * 179.97438 * 20 18 17 32 32 H 1.08002 * 124.52231 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2416 6 6 3.1269 2.8774 -1.6727 7 7 3.5549 3.6171 -0.6731 8 14 3.4377 3.4170 -3.4339 9 1 2.1399 3.5953 -4.1334 10 1 4.1813 4.7024 -3.4339 11 1 4.2396 2.3819 -4.1345 12 6 2.1389 -1.1671 0.0005 13 8 3.3549 -1.1671 0.0010 14 7 1.4650 -2.3344 0.0005 15 6 2.1639 -3.5449 0.0005 16 6 1.5946 -4.7518 0.0010 17 6 2.5584 -5.8292 0.0003 18 6 2.1846 -7.2510 0.0001 19 8 1.0118 -7.5711 0.0010 20 8 3.1422 -8.1998 -0.0011 21 6 3.8465 -5.3928 -0.0002 22 16 3.9130 -3.6899 0.0066 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5140 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6083 2.0285 0.5138 27 1 3.1499 1.1385 0.5139 28 1 4.0317 4.4430 -0.8504 29 1 0.4950 -2.3344 -0.0002 30 1 0.5258 -4.9073 0.0010 31 1 2.8477 -9.1208 -0.0008 32 1 4.7118 -6.0392 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830723140.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:28 Heat of formation + Delta-G solvation = -77.479785 kcal Electronic energy + Delta-G solvation = -19346.553346 eV Core-core repulsion = 16013.468470 eV Total energy + Delta-G solvation = -3333.084876 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.25055 -39.95759 -37.29112 -36.06624 -35.21892 -34.29849 -32.61704 -29.11254 -27.72118 -25.95971 -25.39800 -23.40699 -21.97123 -20.62107 -19.44432 -18.07056 -17.73588 -17.34982 -16.65913 -16.39122 -15.69187 -15.53650 -15.14620 -14.70637 -14.27397 -13.64259 -13.47660 -13.35465 -12.73234 -12.63531 -12.56821 -12.26150 -11.98351 -11.66467 -11.29709 -11.14404 -11.01685 -10.67001 -10.65229 -10.54432 -10.20038 -9.77714 -9.48859 -8.51022 -8.39856 -8.16423 -7.69898 -6.12377 -4.17951 0.79747 1.42536 1.79275 2.12273 2.73973 3.07531 3.23261 3.27765 3.32565 3.36037 3.63219 4.26227 4.41520 4.98831 5.22071 5.26528 5.34096 5.40721 5.62814 5.71701 5.84041 6.00029 6.14978 6.35185 6.51379 6.55942 7.16874 7.29100 7.44753 7.83297 7.83639 8.11423 8.27958 8.77160 8.92433 9.47541 10.95543 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.030841 B = 0.003722 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.678149 B = 7521.401463 C = 7871.430763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.603 5.603 3 C 0.259 3.741 4 C -0.532 4.532 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.691 3.309 13 O -0.557 6.557 14 N -0.659 5.659 15 C 0.054 3.946 16 C -0.167 4.167 17 C -0.135 4.135 18 C 0.548 3.452 19 O -0.521 6.521 20 O -0.514 6.514 21 C -0.252 4.252 22 S 0.340 5.660 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.048 0.952 28 H 0.265 0.735 29 H 0.411 0.589 30 H 0.150 0.850 31 H 0.411 0.589 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 -16.753 2.642 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.337 5.337 3 C 0.140 3.860 4 C -0.571 4.571 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.392 3.608 13 O -0.435 6.435 14 N -0.309 5.309 15 C -0.161 4.161 16 C -0.199 4.199 17 C -0.152 4.152 18 C 0.392 3.608 19 O -0.412 6.412 20 O -0.326 6.326 21 C -0.392 4.392 22 S 0.603 5.397 23 H 0.068 0.932 24 H 0.102 0.898 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.249 0.751 30 H 0.167 0.833 31 H 0.269 0.731 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.562 -14.983 2.703 15.305 hybrid contribution -1.912 -1.385 -1.041 2.580 sum -3.474 -16.368 1.662 16.815 Atomic orbital electron populations 1.21679 0.81133 1.02797 1.00829 1.47478 1.06045 1.06008 1.74171 1.19344 0.92438 0.76462 0.97756 1.21382 1.37023 1.06518 0.92176 0.92440 1.24916 0.95177 0.96272 0.97547 1.69910 1.38059 1.14381 1.30865 0.86539 0.78408 0.77887 0.84483 1.20239 1.21104 1.20104 1.16002 0.85611 0.80179 0.78971 1.90797 1.11155 1.83945 1.57558 1.42432 1.09828 1.02055 1.76580 1.21819 0.98709 0.88207 1.07393 1.20376 1.00262 0.88031 1.11219 1.18632 0.92586 0.89576 1.14361 1.20273 0.82677 0.86167 0.71708 1.90881 1.19887 1.83352 1.47075 1.84587 1.41547 1.20315 1.86158 1.26590 1.00745 1.06067 1.05755 1.84719 0.96880 0.91977 1.66132 0.93178 0.89826 0.92951 0.94449 0.93413 0.92513 0.75078 0.83259 0.73110 0.80874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.20 59.85 0.61 1.75 16 2 N -0.60 -12.00 2.86 -188.73 -0.54 -12.54 16 3 C 0.26 6.41 5.16 -5.19 -0.03 6.38 16 4 C -0.53 -14.49 9.39 -34.44 -0.32 -14.81 16 5 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.69 13.69 8.25 -86.92 -0.72 12.97 16 13 O -0.56 -12.84 13.39 5.28 0.07 -12.76 16 14 N -0.66 -10.13 5.30 -15.35 -0.08 -10.21 16 15 C 0.05 0.81 7.11 -15.59 -0.11 0.70 16 16 C -0.17 -2.29 10.11 -38.77 -0.39 -2.68 16 17 C -0.13 -1.79 5.98 -104.65 -0.63 -2.41 16 18 C 0.55 6.96 8.30 34.29 0.28 7.25 16 19 O -0.52 -7.89 17.58 -19.32 -0.34 -8.23 16 20 O -0.51 -4.74 13.08 -40.77 -0.53 -5.27 16 21 C -0.25 -3.08 10.54 29.93 0.32 -2.77 16 22 S 0.34 4.97 20.06 -107.50 -2.16 2.82 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.08 1.24 8.07 -51.92 -0.42 0.82 16 25 H 0.05 0.59 6.36 -51.93 -0.33 0.26 16 26 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 27 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.41 4.96 6.53 -40.82 -0.27 4.69 16 30 H 0.15 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.41 1.82 9.11 45.56 0.42 2.23 16 32 H 0.17 1.70 8.01 -52.49 -0.42 1.28 16 LS Contribution 302.80 15.07 4.56 4.56 Total: -1.00 -33.70 302.80 -6.60 -40.30 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -2.22 Total: 2.02 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -1.08 Total: 8.03 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.12 Total: -47.71 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.80 Total: -26.27 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -2.16 Total: 2.82 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.70 -6.60 -40.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830723140.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.184 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds