Wall clock time and date at job start Tue Mar 31 2020 05:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31333 * 1 3 3 Si 1.86803 * 120.00017 * 2 1 4 4 H 1.48500 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47192 * 300.00007 * 3 2 1 6 6 H 1.48503 * 109.46870 * 59.99973 * 3 2 1 7 7 C 1.39098 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99614 * 193.42633 * 7 2 1 9 9 N 1.36800 * 120.00084 * 13.43087 * 7 2 1 10 10 C 1.46498 * 119.99888 * 15.60296 * 9 7 2 11 11 C 1.50702 * 109.47195 * 265.53223 * 10 9 7 12 12 O 1.20835 * 119.99869 * 0.02562 * 11 10 9 13 13 O 1.34226 * 120.00387 * 180.02562 * 11 10 9 14 14 C 1.34779 * 119.99882 * 195.60125 * 9 7 2 15 15 O 1.21566 * 119.99731 * 184.04691 * 14 9 7 16 16 C 1.47919 * 120.00062 * 4.05083 * 14 9 7 17 17 C 1.39955 * 120.93912 * 306.62420 * 16 14 9 18 18 C 1.38041 * 119.01014 * 180.29557 * 17 16 14 19 19 N 1.31874 * 120.94700 * 359.70358 * 18 17 16 20 20 C 1.31783 * 122.08977 * 0.02562 * 19 18 17 21 21 C 1.38314 * 120.87491 * 0.02562 * 20 19 18 22 22 Cl 1.73605 * 120.52053 * 179.97438 * 21 20 19 23 23 H 0.96996 * 119.99609 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47514 * 25.53039 * 10 9 7 25 25 H 1.09002 * 109.47103 * 145.53777 * 10 9 7 26 26 H 0.96695 * 117.00117 * 179.97438 * 13 11 10 27 27 H 1.08004 * 120.49646 * 0.02675 * 17 16 14 28 28 H 1.08000 * 119.52713 * 179.72653 * 18 17 16 29 29 H 1.07994 * 119.56415 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.7073 1.3464 0.0006 5 1 1.8886 2.3965 -1.2125 6 1 1.8885 2.3964 1.2125 7 6 2.0088 -1.2046 0.0005 8 1 3.0666 -1.2173 0.2177 9 7 1.3528 -2.3733 -0.2741 10 6 0.0265 -2.3402 -0.8953 11 6 -1.0316 -2.4043 0.1759 12 8 -0.7107 -2.4703 1.3389 13 8 -2.3306 -2.3881 -0.1620 14 6 1.9269 -3.5550 0.0268 15 8 1.3775 -4.5941 -0.2837 16 6 3.2252 -3.5876 0.7347 17 6 4.3289 -2.8788 0.2467 18 6 5.5233 -2.9422 0.9359 19 7 5.6313 -3.6525 2.0417 20 6 4.6172 -4.3308 2.5399 21 6 3.3836 -4.3249 1.9144 22 17 2.0541 -5.2223 2.5785 23 1 -0.4849 0.8400 -0.0004 24 1 -0.0862 -1.4163 -1.4625 25 1 -0.0824 -3.1934 -1.5650 26 1 -2.9725 -2.4314 0.5598 27 1 4.2486 -2.2944 -0.6580 28 1 6.3815 -2.4020 0.5643 29 1 4.7513 -4.8994 3.4482 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833065996.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:15 Heat of formation + Delta-G solvation = -73.893062 kcal Electronic energy + Delta-G solvation = -20535.150813 eV Core-core repulsion = 17064.344667 eV Total energy + Delta-G solvation = -3470.806145 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.15497 -39.17393 -37.94426 -36.11148 -35.29150 -34.65285 -32.32916 -31.66687 -30.71958 -28.02970 -25.34541 -23.77391 -23.15730 -21.08174 -19.63091 -18.21838 -17.06379 -16.67623 -16.12945 -15.92347 -15.50465 -15.26113 -14.50953 -14.42604 -14.18585 -13.85721 -13.66773 -13.10696 -12.86140 -12.04098 -11.85094 -11.63164 -11.57054 -11.52429 -11.06261 -10.77681 -10.65030 -10.56402 -10.32988 -9.78187 -9.56920 -9.24207 -9.16621 -8.72072 -8.58250 -8.18607 -6.68744 -4.20011 1.22786 1.31210 2.50735 2.95043 3.06823 3.10736 3.37664 3.62459 3.77872 3.99622 4.24131 4.45240 4.64584 4.83790 5.13975 5.24553 5.35655 5.61010 5.89558 6.09852 6.28554 6.34556 6.53083 6.63491 6.76199 7.12516 7.31897 7.57273 8.02241 8.07461 8.75442 9.05229 9.14850 9.49943 10.36122 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.009199 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.119148 B = 3042.973443 C = 4364.260175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.039 3.961 3 Si 0.932 3.068 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.340 4.340 8 H 0.114 0.886 9 N -0.409 5.409 10 C 0.154 3.846 11 C 0.500 3.500 12 O -0.511 6.511 13 O -0.533 6.533 14 C 0.497 3.503 15 O -0.579 6.579 16 C -0.023 4.023 17 C -0.130 4.130 18 C 0.087 3.913 19 N -0.474 5.474 20 C 0.101 3.899 21 C -0.056 4.056 22 Cl -0.041 7.041 23 H 0.276 0.724 24 H 0.137 0.863 25 H 0.084 0.916 26 H 0.391 0.609 27 H 0.154 0.846 28 H 0.161 0.839 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.122 -1.665 -0.463 4.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.166 4.166 3 Si 0.758 3.242 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.467 4.467 8 H 0.132 0.868 9 N -0.127 5.127 10 C 0.029 3.971 11 C 0.341 3.659 12 O -0.397 6.397 13 O -0.344 6.344 14 C 0.285 3.715 15 O -0.464 6.464 16 C -0.035 4.035 17 C -0.150 4.150 18 C -0.069 4.069 19 N -0.184 5.184 20 C -0.057 4.057 21 C -0.087 4.087 22 Cl -0.012 7.012 23 H 0.087 0.913 24 H 0.155 0.845 25 H 0.101 0.899 26 H 0.247 0.753 27 H 0.171 0.829 28 H 0.178 0.822 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.736 -2.099 -0.148 5.182 hybrid contribution -1.145 1.074 0.381 1.616 sum 3.590 -1.025 0.233 3.741 Atomic orbital electron populations 1.69713 1.06288 1.28415 1.46520 1.25339 0.95472 1.00282 0.95548 0.85770 0.79626 0.80635 0.78211 1.18899 1.20135 1.20507 1.20126 0.94883 0.82932 1.48747 0.86837 1.43317 1.13835 1.05104 1.50398 1.20639 0.79801 1.04662 0.91999 1.23596 0.81510 0.69978 0.90807 1.90590 1.81935 1.45839 1.21358 1.84511 1.18526 1.87037 1.44319 1.17732 0.85804 0.84246 0.83720 1.90686 1.65607 1.32390 1.57703 1.20317 0.95946 0.93770 0.93484 1.22464 0.92192 0.98252 1.02108 1.22700 0.97022 0.96024 0.91130 1.67602 1.31216 1.07186 1.12403 1.22582 0.86521 0.97251 0.99353 1.22110 0.91476 0.98996 0.96070 1.98384 1.45796 1.72698 1.84312 0.91288 0.84538 0.89859 0.75299 0.82876 0.82153 0.82088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.27 8.83 55.50 0.49 -20.78 15 2 C 0.04 0.91 5.10 -17.45 -0.09 0.82 15 3 Si 0.93 18.29 29.57 -169.99 -5.03 13.27 15 4 H -0.26 -4.98 7.11 56.52 0.40 -4.57 15 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 15 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 7 C -0.34 -8.04 8.84 -15.02 -0.13 -8.17 15 8 H 0.11 2.51 4.40 -52.49 -0.23 2.28 15 9 N -0.41 -9.88 2.15 -117.15 -0.25 -10.13 15 10 C 0.15 3.55 5.19 -5.19 -0.03 3.52 15 11 C 0.50 11.87 6.47 36.01 0.23 12.10 15 12 O -0.51 -13.84 16.97 -18.76 -0.32 -14.16 15 13 O -0.53 -10.43 13.42 -39.25 -0.53 -10.95 15 14 C 0.50 11.91 6.53 -12.29 -0.08 11.83 15 15 O -0.58 -14.94 15.89 5.31 0.08 -14.86 15 16 C -0.02 -0.49 5.12 -104.62 -0.54 -1.02 15 17 C -0.13 -2.27 7.64 -39.01 -0.30 -2.56 15 18 C 0.09 1.33 11.17 -17.61 -0.20 1.14 15 19 N -0.47 -7.79 10.33 -13.28 -0.14 -7.93 15 20 C 0.10 1.68 10.98 -17.54 -0.19 1.49 15 21 C -0.06 -1.10 6.38 -38.89 -0.25 -1.35 15 22 Cl -0.04 -0.81 27.56 -51.86 -1.43 -2.24 15 23 H 0.28 6.43 8.31 -40.82 -0.34 6.09 15 24 H 0.14 3.11 6.11 -51.93 -0.32 2.79 15 25 H 0.08 1.80 7.50 -51.93 -0.39 1.41 15 26 H 0.39 5.93 9.10 45.56 0.41 6.35 15 27 H 0.15 2.47 7.07 -52.48 -0.37 2.10 15 28 H 0.16 1.84 8.06 -52.49 -0.42 1.42 15 29 H 0.16 2.18 8.06 -52.49 -0.42 1.75 15 LS Contribution 278.10 15.07 4.19 4.19 Total: -1.00 -31.05 278.10 -5.37 -36.42 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -0.87 Total: 9.39 kcal Atomic # 6 Polarization: 19.34 SS G_CDS: -1.57 Total: 17.78 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.10 Total: -38.83 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.76 Total: -39.96 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.43 Total: -2.24 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.05 -5.37 -36.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065996.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.476 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds