Wall clock time and date at job start Tue Mar 31 2020 05:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 O 1.42895 * 109.47503 * 120.00414 * 2 1 3 13 13 C 1.34977 * 116.99670 * 270.00045 * 12 2 1 14 14 O 1.21706 * 120.00366 * 359.97438 * 13 12 2 15 15 C 1.41469 * 119.99667 * 179.97438 * 13 12 2 16 16 S 1.75659 * 125.11149 * 0.02576 * 15 13 12 17 17 C 1.75557 * 91.21697 * 179.97438 * 16 15 13 18 18 C 1.34235 * 110.69103 * 359.97438 * 17 16 15 19 19 C 1.37269 * 125.10525 * 179.72311 * 15 13 12 20 20 O 1.37635 * 124.48755 * 0.24785 * 19 15 13 21 21 C 1.43375 * 114.50873 * 163.25647 * 20 19 15 22 22 C 1.53227 * 109.12390 * 46.53334 * 21 20 19 23 23 O 1.38238 * 124.13474 * 180.20656 * 18 17 16 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 28 28 H 1.07991 * 124.65148 * 180.02562 * 17 16 15 29 29 H 1.08995 * 109.53022 * 166.42438 * 21 20 19 30 30 H 1.09000 * 109.53361 * 286.63842 * 21 20 19 31 31 H 1.08996 * 109.52263 * 57.64483 * 22 21 20 32 32 H 1.09004 * 109.52363 * 177.77854 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 8 2.0064 -0.6737 1.1667 13 6 2.2106 0.0790 2.2683 14 8 1.9901 1.2755 2.2374 15 6 2.6811 -0.5231 3.4589 16 16 3.0425 -2.2311 3.6530 17 6 3.5106 -1.9803 5.3263 18 6 3.3863 -0.6873 5.6649 19 6 2.9294 0.1408 4.6345 20 8 2.7488 1.4927 4.8192 21 6 2.7036 1.9047 6.1917 22 6 3.8583 1.2444 6.9523 23 8 3.6845 -0.1810 6.9162 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7093 1.1619 -3.4844 28 1 3.8525 -2.7592 5.9916 29 1 2.8014 2.9886 6.2502 30 1 1.7548 1.5991 6.6329 31 1 4.8047 1.5152 6.4843 32 1 3.8537 1.5841 7.9881 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847648970.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:40 Heat of formation + Delta-G solvation = -118.326884 kcal Electronic energy + Delta-G solvation = -20061.436957 eV Core-core repulsion = 16694.288067 eV Total energy + Delta-G solvation = -3367.148891 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.10665 -39.44143 -37.12686 -36.12352 -35.27686 -33.20119 -30.33335 -29.95090 -29.12898 -25.38742 -25.10782 -23.87144 -22.01927 -20.28720 -19.34677 -18.76712 -17.30046 -17.03174 -16.63021 -16.19729 -15.67989 -15.22885 -14.92324 -14.78090 -14.63014 -14.43015 -14.04635 -13.34042 -12.94801 -12.79921 -12.16486 -11.86251 -11.34058 -11.25735 -11.13647 -11.10020 -10.99903 -10.87070 -10.78834 -10.35371 -10.23994 -9.71624 -9.45888 -8.83868 -8.62946 -8.43552 -7.99877 -6.13906 -4.20769 0.38808 1.37583 1.65300 2.11418 3.11508 3.27564 3.31301 3.33477 3.37226 3.53150 3.68194 4.05460 4.35177 4.49809 4.64064 4.71100 5.07142 5.18994 5.20988 5.28004 5.35090 5.73617 6.07545 6.50954 6.69163 6.93456 6.96253 6.98210 7.19518 7.63941 7.77817 7.97321 8.18364 8.66757 8.92926 9.44579 10.93669 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.031069 B = 0.004409 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.999509 B = 6348.938271 C = 6911.480348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.213 3.787 3 H 0.046 0.954 4 C -0.519 4.519 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.348 6.348 13 C 0.523 3.477 14 O -0.495 6.495 15 C -0.254 4.254 16 S 0.269 5.731 17 C -0.227 4.227 18 C 0.029 3.971 19 C 0.120 3.880 20 O -0.260 6.260 21 C 0.012 3.988 22 C 0.018 3.982 23 O -0.293 6.293 24 H 0.015 0.985 25 H 0.036 0.964 26 H 0.099 0.901 27 H 0.266 0.734 28 H 0.180 0.820 29 H 0.125 0.875 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.924 -2.936 18.884 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.160 3.840 3 H 0.064 0.936 4 C -0.557 4.557 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.264 6.264 13 C 0.367 3.633 14 O -0.386 6.386 15 C -0.373 4.373 16 S 0.534 5.466 17 C -0.364 4.364 18 C -0.028 4.028 19 C 0.059 3.941 20 O -0.173 6.173 21 C -0.064 4.064 22 C -0.058 4.058 23 O -0.209 6.209 24 H 0.035 0.965 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.198 0.802 29 H 0.143 0.857 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.685 -3.685 17.734 18.710 hybrid contribution 0.270 1.203 0.264 1.261 sum 4.956 -2.482 17.999 18.833 Atomic orbital electron populations 1.22188 0.97703 1.00067 1.01389 1.20247 0.91440 0.94284 0.78050 0.93616 1.21026 1.32431 1.13411 0.88832 0.91299 1.24883 0.94956 0.95075 0.99036 1.69904 1.36142 1.22530 1.24091 0.86283 0.79305 0.79131 0.81467 1.20366 1.21007 1.19608 1.86169 1.76437 1.42922 1.20913 1.18110 0.76095 0.85423 0.83665 1.90878 1.48121 1.15328 1.84253 1.21845 1.19395 0.98991 0.97064 1.84515 1.60970 1.00836 1.00280 1.25220 1.10513 0.98468 1.02207 1.18126 1.05457 0.92753 0.86418 1.18847 0.97860 0.84927 0.92470 1.87211 1.87585 1.16964 1.25534 1.23716 0.99176 1.02041 0.81476 1.23657 0.98965 0.79654 1.03574 1.87097 1.87572 1.22387 1.23861 0.96547 0.94454 0.88306 0.92452 0.80226 0.85717 0.90318 0.90315 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 9.31 37.16 0.35 -3.74 16 2 C 0.21 5.92 2.51 -27.88 -0.07 5.85 16 3 H 0.05 1.40 7.11 -51.93 -0.37 1.04 16 4 C -0.52 -14.85 8.89 -34.44 -0.31 -15.15 16 5 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 8 Si 0.91 21.32 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 O -0.35 -8.70 9.47 -41.25 -0.39 -9.09 16 13 C 0.52 12.19 7.68 31.96 0.25 12.43 16 14 O -0.49 -12.83 15.10 -25.42 -0.38 -13.22 16 15 C -0.25 -4.75 6.25 -38.70 -0.24 -4.99 16 16 S 0.27 3.77 23.00 -107.50 -2.47 1.30 16 17 C -0.23 -2.68 11.17 29.32 0.33 -2.35 16 18 C 0.03 0.40 6.54 -40.38 -0.26 0.13 16 19 C 0.12 2.01 6.58 -39.32 -0.26 1.75 16 20 O -0.26 -4.33 9.60 -49.11 -0.47 -4.80 16 21 C 0.01 0.13 7.13 37.27 0.27 0.39 16 22 C 0.02 0.16 7.15 37.27 0.27 0.42 16 23 O -0.29 -3.49 10.78 -35.42 -0.38 -3.88 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16 27 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.18 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 294.85 15.07 4.44 4.44 Total: -1.00 -33.83 294.85 -7.02 -40.85 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -3.19 Total: -3.26 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 0.22 Total: -3.60 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.63 Total: -25.05 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -1.63 Total: -30.98 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -2.47 Total: 1.30 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.83 -7.02 -40.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847648970.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.474 kcal (2) G-P(sol) polarization free energy of solvation -33.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds