Wall clock time and date at job start Tue Mar 31 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47212 * 2 1 4 4 C 1.50696 * 109.47282 * 120.01138 * 2 1 3 5 5 H 1.07995 * 120.00501 * 119.99884 * 4 2 1 6 6 C 1.37875 * 119.99543 * 299.99098 * 4 2 1 7 7 N 1.31516 * 120.00491 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99915 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47205 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47380 * 120.00268 * 8 6 4 11 11 H 1.48508 * 109.47203 * 240.00354 * 8 6 4 12 12 O 1.42906 * 109.46684 * 240.00758 * 2 1 3 13 13 C 1.34974 * 117.00147 * 89.99954 * 12 2 1 14 14 O 1.21706 * 120.00082 * 359.97438 * 13 12 2 15 15 C 1.41462 * 119.99778 * 180.02562 * 13 12 2 16 16 S 1.75662 * 125.11041 * 359.97250 * 15 13 12 17 17 C 1.75557 * 91.21230 * 179.97438 * 16 15 13 18 18 C 1.34230 * 110.69811 * 359.96889 * 17 16 15 19 19 C 1.37275 * 125.10695 * 180.02562 * 15 13 12 20 20 O 1.37636 * 124.48799 * 0.33197 * 19 15 13 21 21 C 1.43315 * 114.55038 * 163.36675 * 20 19 15 22 22 C 1.53218 * 109.18777 * 46.34218 * 21 20 19 23 23 O 1.38247 * 124.13493 * 180.21706 * 18 17 16 24 24 H 1.09002 * 109.46685 * 299.99214 * 1 2 3 25 25 H 1.09000 * 109.47207 * 59.99373 * 1 2 3 26 26 H 1.08997 * 109.46918 * 179.97438 * 1 2 3 27 27 H 0.96997 * 120.00138 * 179.97438 * 7 6 4 28 28 H 1.08001 * 124.64968 * 180.02562 * 17 16 15 29 29 H 1.08996 * 109.44323 * 286.46067 * 21 20 19 30 30 H 1.09005 * 109.61146 * 166.32091 * 21 20 19 31 31 H 1.09000 * 109.52556 * 177.91367 * 22 21 20 32 32 H 1.09003 * 109.52500 * 57.72320 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6533 -1.5887 1.1311 6 6 1.6994 -0.2396 2.4826 7 7 0.9431 0.8294 2.6035 8 14 2.3227 -1.1200 4.0077 9 1 3.1474 -2.2869 3.6034 10 1 3.1475 -0.1864 4.8159 11 1 1.1680 -1.5871 4.8163 12 8 2.0063 -0.6735 -1.1669 13 6 2.2105 0.0792 -2.2685 14 8 1.9892 1.2756 -2.2377 15 6 2.6808 -0.5226 -3.4592 16 16 3.0420 -2.2307 -3.6535 17 6 3.5084 -1.9799 -5.3273 18 6 3.3826 -0.6872 -5.6662 19 6 2.9244 0.1406 -4.6362 20 8 2.7494 1.4935 -4.8190 21 6 3.4041 2.0275 -5.9766 22 6 3.1255 1.1176 -7.1775 23 8 3.6713 -0.1824 -6.9205 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7085 1.1605 3.4845 28 1 3.8489 -2.7590 -5.9932 29 1 4.4781 2.0746 -5.7966 30 1 3.0249 3.0285 -6.1823 31 1 3.5903 1.5384 -8.0691 32 1 2.0494 1.0358 -7.3306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847648977.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:42 Heat of formation + Delta-G solvation = -118.347501 kcal Electronic energy + Delta-G solvation = -20061.676872 eV Core-core repulsion = 16694.527088 eV Total energy + Delta-G solvation = -3367.149785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.12018 -39.44402 -37.14501 -36.12776 -35.28297 -33.20223 -30.33685 -29.95024 -29.13186 -25.38903 -25.11184 -23.88437 -22.02012 -20.28560 -19.34388 -18.77466 -17.30475 -17.03440 -16.68446 -16.11230 -15.67296 -15.34638 -14.94229 -14.75062 -14.57932 -14.45031 -14.03000 -13.29846 -13.02770 -12.80329 -12.12189 -11.89094 -11.34282 -11.24809 -11.13054 -11.08321 -11.01924 -10.89245 -10.77694 -10.32597 -10.24545 -9.71751 -9.46455 -8.83052 -8.62837 -8.44045 -7.99795 -6.14207 -4.20956 0.38656 1.37481 1.65203 2.11665 3.11385 3.26313 3.30816 3.33658 3.38349 3.53160 3.68241 4.05085 4.35172 4.49727 4.64214 4.71238 5.07136 5.18784 5.20999 5.28399 5.35011 5.73655 6.07528 6.51554 6.69184 6.93662 6.96508 6.98460 7.19504 7.64045 7.77733 7.97322 8.18271 8.66731 8.93080 9.44469 10.93409 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.031228 B = 0.004406 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.420786 B = 6354.009830 C = 6912.085569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.213 3.787 3 H 0.046 0.954 4 C -0.518 4.518 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 O -0.348 6.348 13 C 0.523 3.477 14 O -0.495 6.495 15 C -0.254 4.254 16 S 0.269 5.731 17 C -0.227 4.227 18 C 0.029 3.971 19 C 0.120 3.880 20 O -0.260 6.260 21 C 0.012 3.988 22 C 0.018 3.982 23 O -0.293 6.293 24 H 0.099 0.901 25 H 0.016 0.984 26 H 0.036 0.964 27 H 0.265 0.735 28 H 0.180 0.820 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.884 -2.957 -18.907 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.160 3.840 3 H 0.064 0.936 4 C -0.556 4.556 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.207 1.207 12 O -0.264 6.264 13 C 0.367 3.633 14 O -0.386 6.386 15 C -0.373 4.373 16 S 0.534 5.466 17 C -0.364 4.364 18 C -0.027 4.027 19 C 0.059 3.941 20 O -0.173 6.173 21 C -0.064 4.064 22 C -0.058 4.058 23 O -0.209 6.209 24 H 0.117 0.883 25 H 0.035 0.965 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.198 0.802 29 H 0.097 0.903 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.648 -3.714 -17.759 18.729 hybrid contribution 0.262 1.221 -0.264 1.277 sum 4.909 -2.492 -18.023 18.845 Atomic orbital electron populations 1.22188 0.97695 1.00066 1.01402 1.20253 0.91452 0.94284 0.78055 0.93622 1.21066 1.32348 1.13396 0.88821 0.91237 1.24888 0.94951 0.95091 0.99050 1.69916 1.36145 1.22625 1.23978 0.86235 0.78621 0.79509 0.81859 1.19445 1.20785 1.20742 1.86170 1.76434 1.42906 1.20935 1.18107 0.76086 0.85424 0.83677 1.90878 1.48076 1.15336 1.84290 1.21839 1.20126 0.99504 0.95821 1.84519 1.59964 1.01124 1.00965 1.25214 1.10723 0.97769 1.02712 1.18122 1.06622 0.92277 0.85703 1.18843 0.99061 0.84829 0.91384 1.87191 1.68980 1.16790 1.44345 1.23703 0.99163 0.98783 0.84758 1.23602 1.00595 0.82495 0.99121 1.87023 1.72730 1.33260 1.27876 0.88297 0.96540 0.94454 0.92508 0.80221 0.90324 0.85696 0.85926 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 9.31 37.16 0.35 -3.74 16 2 C 0.21 5.91 2.51 -27.88 -0.07 5.84 16 3 H 0.05 1.40 7.11 -51.93 -0.37 1.03 16 4 C -0.52 -14.82 8.89 -34.44 -0.31 -15.13 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.67 11.32 55.43 0.63 -25.04 16 8 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 O -0.35 -8.70 9.47 -41.25 -0.39 -9.09 16 13 C 0.52 12.18 7.68 31.96 0.25 12.43 16 14 O -0.49 -12.83 15.10 -25.42 -0.38 -13.21 16 15 C -0.25 -4.75 6.25 -38.71 -0.24 -4.99 16 16 S 0.27 3.77 23.00 -107.50 -2.47 1.30 16 17 C -0.23 -2.68 11.17 29.32 0.33 -2.35 16 18 C 0.03 0.40 6.55 -40.39 -0.26 0.14 16 19 C 0.12 2.01 6.58 -39.32 -0.26 1.75 16 20 O -0.26 -4.33 9.59 -49.11 -0.47 -4.80 16 21 C 0.01 0.13 7.14 37.27 0.27 0.39 16 22 C 0.02 0.16 7.14 37.27 0.27 0.43 16 23 O -0.29 -3.49 10.77 -35.44 -0.38 -3.87 16 24 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 294.82 15.07 4.44 4.44 Total: -1.00 -33.84 294.82 -7.02 -40.87 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -3.19 Total: -3.28 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 0.22 Total: -3.59 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.63 Total: -25.04 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -1.63 Total: -30.97 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -2.47 Total: 1.30 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.84 -7.02 -40.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847648977.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.482 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds