Wall clock time and date at job start Tue Mar 31 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38656 * 120.79239 * 2 1 4 4 C 1.38188 * 119.16843 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.60190 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.46577 * 94.99939 * 5 4 3 7 7 C 1.46905 * 110.99800 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47194 * 180.02562 * 7 6 5 9 9 H 1.08004 * 120.00034 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00022 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99865 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00095 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46927 * 60.00589 * 12 10 8 14 14 H 1.48505 * 109.47227 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47223 * 300.00520 * 12 10 8 16 16 N 1.31875 * 120.79166 * 0.27457 * 4 3 2 17 17 C 1.31846 * 121.73479 * 359.43448 * 16 4 3 18 18 C 1.38327 * 120.75043 * 0.56624 * 17 16 4 19 19 Br 1.89097 * 120.43269 * 179.74612 * 18 17 16 20 20 H 1.08996 * 109.47481 * 89.99721 * 1 2 3 21 21 H 1.09002 * 109.47125 * 210.00209 * 1 2 3 22 22 H 1.09006 * 109.47201 * 329.99652 * 1 2 3 23 23 H 1.08001 * 120.41408 * 359.95723 * 3 2 1 24 24 H 1.09000 * 109.47318 * 214.99446 * 5 4 3 25 25 H 1.09000 * 109.47161 * 335.00077 * 5 4 3 26 26 H 1.00896 * 111.00594 * 303.95433 * 6 5 4 27 27 H 1.09002 * 109.47091 * 300.00139 * 7 6 5 28 28 H 1.09001 * 109.46854 * 60.00166 * 7 6 5 29 29 H 0.97003 * 120.00178 * 179.97438 * 11 10 8 30 30 H 1.08007 * 119.62998 * 180.27015 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1911 0.0000 4 6 3.5981 1.1519 0.0005 5 6 4.3794 2.4407 0.0000 6 7 4.7359 2.7976 1.3796 7 6 5.5007 4.0514 1.4181 8 6 5.8481 4.3842 2.8463 9 1 5.5328 3.7296 3.6454 10 6 6.5695 5.5237 3.1326 11 7 6.9539 6.3205 2.1595 12 14 6.9996 5.9366 4.9029 13 1 7.8162 4.8401 5.4826 14 1 7.7727 7.2039 4.9418 15 1 5.7513 6.0944 5.6917 16 7 4.2409 0.0004 -0.0044 17 6 3.5997 -1.1517 0.0011 18 6 2.2171 -1.1916 0.0006 19 35 1.3067 -2.8490 0.0012 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5139 23 1 1.6966 2.1376 -0.0007 24 1 5.2879 2.3146 -0.5890 25 1 3.7715 3.2339 -0.4351 26 1 3.9139 2.8571 1.9617 27 1 6.4169 3.9360 0.8391 28 1 4.9008 4.8560 0.9928 29 1 7.4610 7.1225 2.3610 30 1 4.1605 -2.0748 0.0012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862351682.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:24 Heat of formation + Delta-G solvation = 28.255030 kcal Electronic energy + Delta-G solvation = -14049.068941 eV Core-core repulsion = 11504.097679 eV Total energy + Delta-G solvation = -2544.971263 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.39053 -35.67812 -34.20982 -32.83731 -31.93354 -30.04835 -27.90798 -27.11070 -24.51428 -23.15833 -21.54006 -20.74758 -16.98324 -16.65489 -16.01338 -15.32611 -14.83139 -14.65772 -14.27019 -13.58071 -13.36708 -13.00111 -12.80749 -12.74980 -12.31703 -11.73480 -11.40630 -11.31105 -11.15848 -10.72924 -10.70454 -10.53325 -9.99828 -9.55429 -9.40691 -9.23446 -8.84318 -8.49326 -7.37877 -6.04761 -4.06902 0.83620 1.11983 1.40126 3.33649 3.37389 3.40809 3.61206 4.32341 4.42133 4.45392 4.52744 4.84664 5.20458 5.22646 5.31209 5.31618 5.41513 5.55337 5.63406 5.77993 5.98773 6.02907 6.17178 6.52394 7.16904 7.35182 7.73920 7.97722 8.08396 8.30761 8.53370 9.01263 9.57925 11.06308 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.042175 B = 0.003229 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.735649 B = 8669.686844 C = 8762.694921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.014 4.014 3 C -0.167 4.167 4 C 0.168 3.832 5 C 0.102 3.898 6 N -0.678 5.678 7 C 0.195 3.805 8 C -0.515 4.515 9 H 0.062 0.938 10 C 0.057 3.943 11 N -0.898 5.898 12 Si 0.901 3.099 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.277 1.277 16 N -0.459 5.459 17 C 0.139 3.861 18 C -0.162 4.162 19 Br -0.045 7.045 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.142 0.858 24 H 0.087 0.913 25 H 0.040 0.960 26 H 0.329 0.671 27 H 0.032 0.968 28 H -0.011 1.011 29 H 0.262 0.738 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.244 -17.129 -7.134 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.023 4.023 3 C -0.189 4.189 4 C 0.030 3.970 5 C -0.028 4.028 6 N -0.309 5.309 7 C 0.069 3.931 8 C -0.554 4.554 9 H 0.080 0.920 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.728 3.272 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.203 1.203 16 N -0.169 5.169 17 C -0.021 4.021 18 C -0.243 4.243 19 Br 0.040 6.960 20 H 0.100 0.900 21 H 0.098 0.902 22 H 0.096 0.904 23 H 0.159 0.841 24 H 0.105 0.895 25 H 0.058 0.942 26 H 0.145 0.855 27 H 0.050 0.950 28 H 0.007 0.993 29 H 0.072 0.928 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.979 -17.933 -7.173 23.842 hybrid contribution -1.079 1.282 0.739 1.831 sum -15.058 -16.651 -6.434 23.353 Atomic orbital electron populations 1.20997 0.89569 1.04137 1.03427 1.20180 0.97067 0.91410 0.93678 1.21968 0.94867 0.98396 1.03633 1.21646 0.90762 0.94406 0.90156 1.20875 0.98359 0.89215 0.94358 1.60670 1.25725 1.39077 1.05455 1.19601 0.92748 0.82993 0.97765 1.21119 1.34790 1.07062 0.92438 0.91980 1.24976 0.95809 0.96103 0.97584 1.69950 1.38296 1.13845 1.31634 0.86522 0.78505 0.77572 0.84575 1.20096 1.21302 1.20268 1.67743 1.39880 0.97502 1.11741 1.22875 0.89253 0.97121 0.92842 1.22852 0.96342 0.91952 1.13193 1.96648 1.77191 1.24412 1.97776 0.89978 0.90228 0.90378 0.84054 0.89482 0.94194 0.85509 0.95035 0.99340 0.92796 0.82116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.63 36.01 0.35 -0.73 16 2 C -0.01 -0.16 5.92 -104.29 -0.62 -0.78 16 3 C -0.17 -2.19 9.43 -39.45 -0.37 -2.57 16 4 C 0.17 2.67 6.29 -82.59 -0.52 2.15 16 5 C 0.10 1.82 5.99 -4.97 -0.03 1.79 16 6 N -0.68 -14.70 6.48 -116.33 -0.75 -15.45 16 7 C 0.20 5.09 5.44 -4.97 -0.03 5.06 16 8 C -0.52 -14.65 9.32 -34.44 -0.32 -14.97 16 9 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 12 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 N -0.46 -7.57 10.27 -9.45 -0.10 -7.67 16 17 C 0.14 1.88 10.95 -17.51 -0.19 1.69 16 18 C -0.16 -1.97 6.24 -39.37 -0.25 -2.21 16 19 Br -0.04 -0.44 31.97 -68.01 -2.17 -2.62 16 20 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.08 0.66 6.78 -51.93 -0.35 0.31 16 22 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 23 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 24 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 25 H 0.04 0.66 8.04 -51.93 -0.42 0.24 16 26 H 0.33 6.76 8.72 -39.29 -0.34 6.42 16 27 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 28 H -0.01 -0.30 8.14 -51.93 -0.42 -0.72 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.16 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 283.99 15.07 4.28 4.28 Total: -1.00 -30.65 283.99 -8.72 -39.37 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -3.61 Total: 0.41 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -2.07 Total: -9.03 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.11 Total: -49.12 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.17 Total: -2.62 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.65 -8.72 -39.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862351682.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.623 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds