Wall clock time and date at job start Tue Mar 31 2020 05:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00488 * 2 1 4 4 H 1.48503 * 109.47405 * 270.00175 * 3 2 1 5 5 H 1.48509 * 109.47085 * 29.99792 * 3 2 1 6 6 H 1.48501 * 109.47573 * 149.99788 * 3 2 1 7 7 C 1.37887 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00022 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99764 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46577 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.46910 * 180.02562 * 10 9 7 12 12 C 1.46899 * 110.99957 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46836 * 179.97438 * 12 11 10 14 14 C 1.38626 * 120.41858 * 104.98242 * 13 12 11 15 15 C 1.38659 * 118.43114 * 180.02562 * 14 13 12 16 16 C 1.38196 * 119.18561 * 359.97438 * 15 14 13 17 17 N 1.31874 * 120.77462 * 0.02562 * 16 15 14 18 18 C 1.31952 * 121.71015 * 0.02562 * 17 16 15 19 19 Br 1.89101 * 119.62611 * 179.97438 * 18 17 16 20 20 H 0.97003 * 119.99499 * 0.02562 * 1 2 3 21 21 H 1.08992 * 109.47175 * 60.00381 * 9 7 2 22 22 H 1.08997 * 109.47088 * 299.99825 * 9 7 2 23 23 H 1.08992 * 109.47224 * 59.99612 * 10 9 7 24 24 H 1.09005 * 109.46809 * 299.99840 * 10 9 7 25 25 H 1.00901 * 111.00078 * 56.03639 * 11 10 9 26 26 H 1.09005 * 109.47037 * 59.99651 * 12 11 10 27 27 H 1.08998 * 109.46972 * 300.00153 * 12 11 10 28 28 H 1.08001 * 120.78511 * 0.03740 * 14 13 12 29 29 H 1.08003 * 120.40784 * 180.02562 * 15 14 13 30 30 H 1.08000 * 119.61434 * 180.28172 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1943 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 7 1.5105 -4.9344 0.0012 12 6 2.4349 -6.0760 0.0018 13 6 1.6468 -7.3605 0.0018 14 6 1.5435 -8.1206 -1.1529 15 6 0.8077 -9.2949 -1.1066 16 6 0.2060 -9.6669 0.0806 17 7 0.3251 -8.9194 1.1605 18 6 1.0164 -7.7955 1.1534 19 35 1.1478 -6.7688 2.7359 20 1 -0.4849 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6239 -2.5567 0.8903 23 1 2.8711 -3.6041 0.8922 24 1 2.8724 -3.6048 -0.8878 25 1 0.8748 -4.9845 -0.7808 26 1 3.0623 -6.0351 0.8923 27 1 3.0635 -6.0350 -0.8877 28 1 2.0250 -7.8057 -2.0669 29 1 0.7067 -9.9118 -1.9874 30 1 -0.3649 -10.5825 0.1257 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865526273.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:48 Heat of formation + Delta-G solvation = 29.059825 kcal Electronic energy + Delta-G solvation = -14111.471780 eV Core-core repulsion = 11566.535416 eV Total energy + Delta-G solvation = -2544.936364 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.36539 -36.26075 -33.48859 -32.78885 -32.14565 -30.01009 -28.89339 -25.76467 -23.61149 -23.37234 -21.72826 -20.55270 -17.11796 -16.80520 -16.31282 -15.58641 -14.74628 -14.57377 -14.43237 -13.73479 -13.57898 -13.31625 -12.65316 -12.49682 -12.13991 -11.47679 -11.05714 -10.93755 -10.88401 -10.55421 -10.11181 -10.01920 -9.92034 -9.66250 -9.38379 -9.15669 -8.85652 -8.34363 -7.84419 -5.98745 -4.01357 0.76441 1.02066 1.55138 3.32406 3.38860 3.42024 3.48676 4.28037 4.44700 4.55509 4.67458 4.76503 4.98792 5.06174 5.27199 5.37341 5.51493 5.79944 5.83108 5.98569 6.31818 6.32792 6.39330 6.97315 7.41313 7.59354 7.71835 7.80382 7.93045 8.09179 8.43845 9.06025 9.62342 11.12641 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.028883 B = 0.004375 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.200018 B = 6398.655454 C = 6972.557582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.069 3.931 11 N -0.678 5.678 12 C 0.093 3.907 13 C -0.097 4.097 14 C -0.067 4.067 15 C -0.163 4.163 16 C 0.100 3.900 17 N -0.466 5.466 18 C 0.142 3.858 19 Br 0.012 6.988 20 H 0.260 0.740 21 H 0.013 0.987 22 H 0.027 0.973 23 H 0.061 0.939 24 H 0.016 0.984 25 H 0.336 0.664 26 H 0.088 0.912 27 H 0.039 0.961 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.880 -20.241 -0.155 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.059 4.059 11 N -0.309 5.309 12 C -0.036 4.036 13 C -0.102 4.102 14 C -0.095 4.095 15 C -0.184 4.184 16 C -0.059 4.059 17 N -0.175 5.175 18 C -0.075 4.075 19 Br 0.097 6.903 20 H 0.070 0.930 21 H 0.031 0.969 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.034 0.966 25 H 0.153 0.847 26 H 0.106 0.894 27 H 0.057 0.943 28 H 0.159 0.841 29 H 0.157 0.843 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.296 -19.986 1.926 20.209 hybrid contribution 1.040 0.919 -2.141 2.551 sum 3.336 -19.067 -0.214 19.358 Atomic orbital electron populations 1.69977 1.06032 1.26569 1.50605 1.24997 0.94821 0.99183 0.95315 0.86600 0.79865 0.83526 0.78027 1.20741 1.21200 1.19874 1.21170 0.92961 0.90997 1.50916 0.92765 1.19058 0.94000 0.90277 0.97799 1.22172 0.96992 0.87979 0.98756 1.60618 1.19234 1.01352 1.49652 1.20929 0.93741 0.87154 1.01824 1.20809 0.98754 0.97889 0.92770 1.21591 0.96531 0.93648 0.97707 1.22203 0.98631 0.97697 0.99826 1.22776 0.96877 0.98443 0.87829 1.67517 1.15081 1.04353 1.30592 1.22829 0.97305 0.93739 0.93629 1.96847 1.96667 1.67324 1.29495 0.93002 0.96886 0.95479 0.92067 0.96624 0.84670 0.89369 0.94331 0.84114 0.84262 0.82165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.41 5.62 -3.82 -0.02 1.38 16 11 N -0.68 -11.74 6.25 -115.06 -0.72 -12.46 16 12 C 0.09 1.31 5.09 -4.98 -0.03 1.29 16 13 C -0.10 -1.28 5.41 -104.46 -0.57 -1.85 16 14 C -0.07 -0.70 9.81 -39.28 -0.39 -1.09 16 15 C -0.16 -1.46 10.11 -39.44 -0.40 -1.86 16 16 C 0.10 1.03 11.18 -17.55 -0.20 0.84 16 17 N -0.47 -6.45 10.32 -11.65 -0.12 -6.57 16 18 C 0.14 2.07 7.16 -17.48 -0.13 1.95 16 19 Br 0.01 0.18 32.11 -68.01 -2.18 -2.00 16 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.34 5.71 8.72 -39.29 -0.34 5.37 16 26 H 0.09 1.27 7.41 -51.93 -0.38 0.88 16 27 H 0.04 0.49 8.00 -51.93 -0.42 0.07 16 28 H 0.14 1.14 8.05 -52.49 -0.42 0.72 16 29 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 30 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 283.94 15.07 4.28 4.28 Total: -1.00 -31.35 283.94 -8.95 -40.29 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -3.64 Total: -1.66 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.27 Total: -12.28 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.10 Total: -45.28 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 35 Polarization: 0.18 SS G_CDS: -2.18 Total: -2.00 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.35 -8.95 -40.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865526273.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.355 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds