Wall clock time and date at job start Tue Mar 31 2020 05:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38057 * 119.56468 * 2 1 4 4 C 1.38841 * 119.33526 * 179.73667 * 3 2 1 5 5 C 1.38412 * 118.49451 * 0.52505 * 4 3 2 6 6 Br 1.89098 * 120.45542 * 179.71649 * 5 4 3 7 7 C 1.39172 * 119.08249 * 359.73562 * 5 4 3 8 8 N 1.39050 * 119.70703 * 179.97438 * 7 5 4 9 9 C 1.46506 * 119.99767 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47079 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47386 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99339 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00159 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99649 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99967 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.46988 * 90.00199 * 15 13 11 17 17 H 1.48506 * 109.46710 * 210.00246 * 15 13 11 18 18 H 1.48495 * 109.47153 * 330.00074 * 15 13 11 19 19 N 1.31957 * 119.56321 * 180.26976 * 2 1 3 20 20 H 1.09002 * 109.47152 * 269.72915 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.73015 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.72996 * 1 2 3 23 23 H 1.07996 * 120.32890 * 359.97438 * 3 2 1 24 24 H 1.07994 * 120.75416 * 180.24573 * 4 3 2 25 25 H 0.96994 * 120.00499 * 0.02562 * 8 7 5 26 26 H 1.08994 * 109.47460 * 300.00343 * 9 8 7 27 27 H 1.09000 * 109.46849 * 59.99926 * 9 8 7 28 28 H 1.09004 * 109.47191 * 300.00324 * 10 9 8 29 29 H 1.09000 * 109.47342 * 60.00227 * 10 9 8 30 30 H 0.96999 * 119.99801 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1882 1.2008 0.0000 4 6 3.5766 1.1953 0.0056 5 6 4.2321 -0.0238 -0.0002 6 35 6.1217 -0.0960 -0.0011 7 6 3.4812 -1.1956 -0.0057 8 7 4.1264 -2.4273 -0.0121 9 6 3.3422 -3.6649 -0.0184 10 6 4.2877 -4.8677 -0.0240 11 6 3.4811 -6.1407 -0.0312 12 1 2.4021 -6.0962 -0.0313 13 6 4.1208 -7.3621 -0.0366 14 7 3.4168 -8.4730 -0.0423 15 14 5.9872 -7.4390 -0.0356 16 1 6.4808 -7.4660 1.3646 17 1 6.4323 -8.6675 -0.7413 18 1 6.5322 -6.2446 -0.7296 19 7 2.1581 -1.1478 -0.0054 20 1 -0.3633 -0.0049 1.0277 21 1 -0.3633 -0.8876 -0.5180 22 1 -0.3633 0.8924 -0.5097 23 1 1.6465 2.1351 -0.0004 24 1 4.1325 2.1211 0.0097 25 1 5.0955 -2.4673 -0.0123 26 1 2.7137 -3.7014 0.8713 27 1 2.7137 -3.6921 -0.9086 28 1 4.9166 -4.8314 -0.9136 29 1 4.9159 -4.8402 0.8664 30 1 3.8668 -9.3323 -0.0465 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865670849.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:49 Heat of formation + Delta-G solvation = 27.992790 kcal Electronic energy + Delta-G solvation = -14261.549755 eV Core-core repulsion = 11716.567121 eV Total energy + Delta-G solvation = -2544.982634 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.23899 -36.20024 -33.60225 -33.00730 -31.51080 -30.47615 -29.54688 -26.73109 -24.73106 -22.37559 -22.11571 -20.50796 -17.33165 -16.81121 -16.30432 -15.76181 -14.98675 -14.29095 -14.17324 -13.87563 -13.56136 -13.02364 -12.82896 -12.61407 -12.28193 -12.02256 -11.51419 -11.39219 -11.02263 -10.58822 -10.37285 -10.09456 -9.96789 -9.79965 -9.38710 -9.26630 -9.20219 -8.60662 -7.48332 -6.10652 -4.10452 1.06913 1.48075 1.67075 3.26751 3.34467 3.36748 3.45811 3.81343 4.39132 4.48915 4.67489 5.00106 5.20314 5.22703 5.37439 5.52752 5.57220 5.86581 5.95477 6.02927 6.13086 6.23337 6.51054 6.58699 7.02821 7.24958 7.38184 7.58554 7.69669 8.32674 8.46510 8.93321 9.49998 11.02310 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.018706 B = 0.005608 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.465177 B = 4991.386125 C = 6462.102239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.196 3.804 3 C -0.248 4.248 4 C 0.001 3.999 5 C -0.232 4.232 6 Br -0.052 7.052 7 C 0.442 3.558 8 N -0.708 5.708 9 C 0.140 3.860 10 C -0.025 4.025 11 C -0.520 4.520 12 H 0.076 0.924 13 C 0.070 3.930 14 N -0.899 5.899 15 Si 0.879 3.121 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.266 1.266 19 N -0.529 5.529 20 H 0.081 0.919 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.134 0.866 24 H 0.137 0.863 25 H 0.407 0.593 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.021 0.979 29 H 0.017 0.983 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.611 22.257 0.104 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.055 3.945 3 C -0.272 4.272 4 C -0.026 4.026 5 C -0.319 4.319 6 Br 0.032 6.968 7 C 0.201 3.799 8 N -0.337 5.337 9 C 0.017 3.983 10 C -0.062 4.062 11 C -0.559 4.559 12 H 0.094 0.906 13 C -0.132 4.132 14 N -0.537 5.537 15 Si 0.706 3.294 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.191 1.191 19 N -0.249 5.249 20 H 0.099 0.901 21 H 0.099 0.901 22 H 0.094 0.906 23 H 0.152 0.848 24 H 0.155 0.845 25 H 0.245 0.755 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.778 20.991 0.093 21.066 hybrid contribution 1.492 0.574 0.037 1.599 sum 3.270 21.564 0.131 21.811 Atomic orbital electron populations 1.20773 0.88665 1.03631 1.03322 1.21131 0.96734 0.87518 0.89129 1.21531 0.93784 0.99088 1.12825 1.21184 0.94333 0.95913 0.91179 1.22000 0.90465 0.95940 1.23521 1.96617 1.03208 1.98778 1.98199 1.18110 0.88129 0.85644 0.88000 1.45452 1.09244 1.02997 1.76043 1.21508 0.94368 0.80810 1.01573 1.19817 0.95911 0.93660 0.96849 1.20883 0.95058 0.88315 1.51606 0.90563 1.24977 0.98269 0.95565 0.94350 1.69900 1.35697 0.97594 1.50507 0.86787 0.86209 0.77775 0.78581 1.20175 1.21213 1.19053 1.67295 1.06300 1.29388 1.21909 0.90059 0.90084 0.90561 0.84798 0.84547 0.75454 0.91936 0.91910 0.96048 0.96489 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.17 36.01 0.37 -0.67 16 2 C 0.20 2.60 6.78 -82.60 -0.56 2.04 16 3 C -0.25 -2.80 9.73 -39.42 -0.38 -3.18 16 4 C 0.00 0.01 9.93 -39.29 -0.39 -0.38 16 5 C -0.23 -3.34 6.27 -39.17 -0.25 -3.59 16 6 Br -0.05 -0.67 32.15 -68.01 -2.19 -2.86 16 7 C 0.44 7.49 7.48 -154.96 -1.16 6.33 16 8 N -0.71 -12.83 5.66 -60.40 -0.34 -13.17 16 9 C 0.14 2.91 5.63 -4.04 -0.02 2.88 16 10 C -0.02 -0.58 4.16 -27.88 -0.12 -0.70 16 11 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 12 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 13 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 14 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 15 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 19 N -0.53 -8.90 9.48 -8.64 -0.08 -8.99 16 20 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 23 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 24 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 25 H 0.41 6.97 6.86 -40.82 -0.28 6.69 16 26 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 29 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 279.41 15.07 4.21 4.21 Total: -1.00 -30.73 279.41 -8.82 -39.56 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -3.59 Total: 1.51 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -2.94 Total: -10.36 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.35 Total: -48.87 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -2.19 Total: -2.86 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.73 -8.82 -39.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865670849.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.550 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds