Wall clock time and date at job start Tue Mar 31 2020 05:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47463 * 2 1 4 4 C 1.36939 * 120.00102 * 273.23265 * 3 2 1 5 5 H 1.07994 * 119.99735 * 335.04935 * 4 3 2 6 6 C 1.38815 * 119.99869 * 155.05700 * 4 3 2 7 7 N 1.31621 * 119.99612 * 152.30597 * 6 4 3 8 8 Si 1.86799 * 119.99843 * 332.30165 * 6 4 3 9 9 H 1.48499 * 109.46976 * 95.58911 * 8 6 4 10 10 H 1.48498 * 109.46756 * 215.58583 * 8 6 4 11 11 H 1.48497 * 109.47271 * 335.58444 * 8 6 4 12 12 C 1.46497 * 119.99723 * 93.22463 * 3 2 1 13 13 C 1.50704 * 109.46894 * 96.92658 * 12 3 2 14 14 C 1.38622 * 120.42194 * 93.71235 * 13 12 3 15 15 C 1.38660 * 118.43299 * 180.02562 * 14 13 12 16 16 C 1.38196 * 119.18242 * 359.97438 * 15 14 13 17 17 N 1.31869 * 120.77880 * 0.02562 * 16 15 14 18 18 C 1.31958 * 121.71059 * 0.02562 * 17 16 15 19 19 Br 1.89101 * 119.62796 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.47489 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46639 * 299.99642 * 1 2 3 22 22 H 1.08996 * 109.47195 * 59.99810 * 1 2 3 23 23 H 1.09007 * 109.46793 * 240.00043 * 2 1 3 24 24 H 1.09000 * 109.47429 * 120.00652 * 2 1 3 25 25 H 0.96999 * 119.99463 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47642 * 336.92723 * 12 3 2 27 27 H 1.09003 * 109.47128 * 216.92536 * 12 3 2 28 28 H 1.08004 * 120.78518 * 0.04630 * 14 13 12 29 29 H 1.08000 * 120.40885 * 180.02562 * 15 14 13 30 30 H 1.08000 * 119.60987 * 180.27999 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1836 2.0490 -1.1840 5 1 2.3528 1.4966 -2.0965 6 6 2.1339 3.4360 -1.2114 7 7 2.7944 4.1001 -2.1361 8 14 1.1294 4.3598 0.0642 9 1 2.0133 4.7794 1.1812 10 1 0.5186 5.5601 -0.5614 11 1 0.0578 3.4744 0.5865 12 6 2.3299 2.0479 1.2667 13 6 3.8093 1.9485 1.5362 14 6 4.6641 2.9673 1.1448 15 6 6.0178 2.8327 1.4128 16 6 6.4674 1.6959 2.0573 17 7 5.6259 0.7460 2.4157 18 6 4.3316 0.8393 2.1762 19 35 3.1780 -0.5586 2.7154 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 2.7593 5.0692 -2.1554 26 1 1.7802 1.5666 2.0756 27 1 2.0414 3.0973 1.2055 28 1 4.2845 3.8452 0.6431 29 1 6.7122 3.6072 1.1223 30 1 7.5198 1.5861 2.2736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876632849.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:06 Heat of formation + Delta-G solvation = 73.147645 kcal Electronic energy + Delta-G solvation = -15421.229037 eV Core-core repulsion = 12878.204464 eV Total energy + Delta-G solvation = -2543.024573 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.83353 -36.47986 -32.52177 -32.36111 -31.89714 -30.00953 -28.84161 -26.06141 -23.93013 -22.83013 -22.02202 -20.17249 -17.09852 -16.42577 -16.34557 -15.35027 -14.81980 -14.52614 -13.67963 -13.58121 -13.10697 -12.75864 -12.61094 -12.35160 -12.00057 -11.51767 -11.38044 -10.93995 -10.75516 -10.65881 -10.42908 -10.03128 -9.65294 -9.34185 -9.20946 -9.16873 -8.59572 -8.33170 -7.14149 -6.09707 -3.35114 1.29906 1.65688 1.73402 3.17678 3.40507 3.43007 4.02605 4.40938 4.81666 4.98166 5.18016 5.29204 5.37354 5.42136 5.62861 5.87012 5.95912 6.07548 6.20175 6.29343 6.39176 6.52739 6.56022 6.73097 6.79555 6.94920 7.06109 7.85191 8.05341 8.23403 8.84814 9.61750 9.97732 11.05634 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.010726 C = 0.007763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.220335 B = 2609.832314 C = 3606.134826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.126 3.874 3 N -0.590 5.590 4 C -0.258 4.258 5 H 0.087 0.913 6 C 0.031 3.969 7 N -0.891 5.891 8 Si 0.861 3.139 9 H -0.284 1.284 10 H -0.301 1.301 11 H -0.269 1.269 12 C 0.166 3.834 13 C -0.093 4.093 14 C -0.045 4.045 15 C -0.158 4.158 16 C 0.085 3.915 17 N -0.469 5.469 18 C 0.122 3.878 19 Br -0.019 7.019 20 H 0.040 0.960 21 H 0.042 0.958 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.263 0.737 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.143 0.857 29 H 0.136 0.864 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 -5.708 10.096 11.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.000 4.000 3 N -0.310 5.310 4 C -0.386 4.386 5 H 0.104 0.896 6 C -0.169 4.169 7 N -0.532 5.532 8 Si 0.692 3.308 9 H -0.213 1.213 10 H -0.230 1.230 11 H -0.195 1.195 12 C 0.039 3.961 13 C -0.101 4.101 14 C -0.072 4.072 15 C -0.178 4.178 16 C -0.075 4.075 17 N -0.180 5.180 18 C -0.095 4.095 19 Br 0.066 6.934 20 H 0.059 0.941 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.161 0.839 29 H 0.153 0.847 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.526 -6.859 10.594 12.871 hybrid contribution -0.528 1.791 -0.076 1.869 sum 1.997 -5.068 10.518 11.845 Atomic orbital electron populations 1.22296 0.99384 0.99301 1.01671 1.21341 0.92104 0.85725 1.00820 1.44174 1.73468 1.11623 1.01716 1.18906 1.43556 0.89455 0.86723 0.89586 1.25107 0.98793 0.96178 0.96784 1.69949 1.39314 1.07399 1.36533 0.87250 0.82923 0.79406 0.81182 1.21333 1.22977 1.19465 1.20289 0.87652 0.98276 0.89834 1.21700 1.01402 0.92660 0.94322 1.21624 0.92578 0.98721 0.94322 1.22211 0.96597 0.99386 0.99629 1.22525 0.98816 0.89630 0.96487 1.67258 1.02232 1.29611 1.18850 1.22386 0.91874 0.93528 1.01717 1.96548 1.59967 1.47209 1.89680 0.94142 0.93893 0.92587 0.93401 0.91954 0.92693 0.91459 0.92644 0.83934 0.84658 0.82672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 10.23 37.16 0.38 -2.65 16 2 C 0.13 2.51 6.35 -4.04 -0.03 2.48 16 3 N -0.59 -13.64 2.29 -174.61 -0.40 -14.04 16 4 C -0.26 -6.90 9.94 -15.06 -0.15 -7.05 16 5 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 6 C 0.03 0.85 5.16 -17.43 -0.09 0.76 16 7 N -0.89 -25.57 13.97 55.49 0.78 -24.79 16 8 Si 0.86 21.01 24.63 -169.99 -4.19 16.82 16 9 H -0.28 -6.59 6.73 56.52 0.38 -6.21 16 10 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.17 3.59 4.47 -5.19 -0.02 3.57 16 13 C -0.09 -1.91 5.43 -104.45 -0.57 -2.47 16 14 C -0.04 -0.88 9.84 -39.28 -0.39 -1.27 16 15 C -0.16 -2.56 10.11 -39.44 -0.40 -2.96 16 16 C 0.08 1.33 11.18 -17.55 -0.20 1.13 16 17 N -0.47 -8.54 10.32 -11.65 -0.12 -8.66 16 18 C 0.12 2.32 7.16 -17.47 -0.13 2.20 16 19 Br -0.02 -0.31 28.73 -68.01 -1.95 -2.26 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.05 0.97 8.07 -51.93 -0.42 0.55 16 24 H 0.06 1.13 4.15 -51.93 -0.22 0.92 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.07 1.32 6.72 -51.93 -0.35 0.98 16 27 H 0.06 1.29 1.85 -51.93 -0.10 1.19 16 28 H 0.14 3.02 7.67 -52.48 -0.40 2.61 16 29 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 266.12 15.07 4.01 4.01 Total: -1.00 -28.93 266.12 -6.63 -35.56 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -3.18 Total: -0.38 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -1.58 Total: -6.26 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.26 Total: -47.49 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.19 Total: 16.82 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -1.95 Total: -2.26 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.93 -6.63 -35.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876632849.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.711 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds