Wall clock time and date at job start Tue Mar 31 2020 05:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47463 * 2 1 4 4 C 1.36939 * 120.00102 * 273.23265 * 3 2 1 5 5 H 1.07994 * 119.99735 * 335.04935 * 4 3 2 6 6 C 1.38815 * 119.99869 * 155.05700 * 4 3 2 7 7 N 1.31621 * 119.99612 * 152.30597 * 6 4 3 8 8 Si 1.86799 * 119.99843 * 332.30165 * 6 4 3 9 9 H 1.48499 * 109.46976 * 95.58911 * 8 6 4 10 10 H 1.48498 * 109.46756 * 215.58583 * 8 6 4 11 11 H 1.48497 * 109.47271 * 335.58444 * 8 6 4 12 12 C 1.46497 * 119.99723 * 93.22463 * 3 2 1 13 13 C 1.50704 * 109.46894 * 96.92658 * 12 3 2 14 14 C 1.38622 * 120.42194 * 93.71235 * 13 12 3 15 15 C 1.38660 * 118.43299 * 180.02562 * 14 13 12 16 16 C 1.38196 * 119.18242 * 359.97438 * 15 14 13 17 17 N 1.31869 * 120.77880 * 0.02562 * 16 15 14 18 18 C 1.31958 * 121.71059 * 0.02562 * 17 16 15 19 19 Br 1.89101 * 119.62796 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.47489 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46639 * 299.99642 * 1 2 3 22 22 H 1.08996 * 109.47195 * 59.99810 * 1 2 3 23 23 H 1.09007 * 109.46793 * 240.00043 * 2 1 3 24 24 H 1.09000 * 109.47429 * 120.00652 * 2 1 3 25 25 H 0.96999 * 119.99463 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47642 * 336.92723 * 12 3 2 27 27 H 1.09003 * 109.47128 * 216.92536 * 12 3 2 28 28 H 1.08004 * 120.78518 * 0.04630 * 14 13 12 29 29 H 1.08000 * 120.40885 * 180.02562 * 15 14 13 30 30 H 1.08000 * 119.60987 * 180.27999 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1836 2.0490 -1.1840 5 1 2.3528 1.4966 -2.0965 6 6 2.1339 3.4360 -1.2114 7 7 2.7944 4.1001 -2.1361 8 14 1.1294 4.3598 0.0642 9 1 2.0133 4.7794 1.1812 10 1 0.5186 5.5601 -0.5614 11 1 0.0578 3.4744 0.5865 12 6 2.3299 2.0479 1.2667 13 6 3.8093 1.9485 1.5362 14 6 4.6641 2.9673 1.1448 15 6 6.0178 2.8327 1.4128 16 6 6.4674 1.6959 2.0573 17 7 5.6259 0.7460 2.4157 18 6 4.3316 0.8393 2.1762 19 35 3.1780 -0.5586 2.7154 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 2.7593 5.0692 -2.1554 26 1 1.7802 1.5666 2.0756 27 1 2.0414 3.0973 1.2055 28 1 4.2845 3.8452 0.6431 29 1 6.7122 3.6072 1.1223 30 1 7.5198 1.5861 2.2736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876632849.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:06 Heat of formation + Delta-G solvation = 55.344592 kcal Electronic energy + Delta-G solvation = -15422.001036 eV Core-core repulsion = 12878.204464 eV Total energy + Delta-G solvation = -2543.796571 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.24355 -38.19610 -34.10892 -33.99206 -33.54394 -31.51599 -30.39176 -27.75601 -25.70461 -24.28588 -23.47291 -21.90304 -18.96389 -17.92922 -17.83216 -17.06603 -16.46822 -16.07240 -15.25762 -15.11615 -14.71011 -14.47540 -14.16338 -14.03005 -13.69666 -13.18964 -12.79266 -12.64611 -12.42902 -12.21023 -12.18031 -11.73834 -11.43267 -10.91034 -10.71811 -10.58299 -10.49413 -9.76127 -9.01951 -8.18996 -5.42248 -0.08535 0.22698 0.34105 1.23210 1.40488 1.47475 2.38149 2.62572 3.05705 3.41975 3.53420 3.74486 3.94460 4.02796 4.30852 4.38178 4.40593 4.52484 4.66276 4.81245 4.83160 5.05625 5.09104 5.22542 5.29136 5.52844 5.58435 5.87330 6.12983 6.69662 6.90179 7.62330 8.00420 9.00464 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.010726 C = 0.007763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.220335 B = 2609.832314 C = 3606.134826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 N -0.600 5.600 4 C -0.250 4.250 5 H 0.049 0.951 6 C -0.007 4.007 7 N -0.934 5.934 8 Si 0.915 3.085 9 H -0.268 1.268 10 H -0.312 1.312 11 H -0.265 1.265 12 C 0.166 3.834 13 C -0.116 4.116 14 C -0.069 4.069 15 C -0.148 4.148 16 C 0.096 3.904 17 N -0.480 5.480 18 C 0.111 3.889 19 Br 0.000 7.000 20 H 0.073 0.927 21 H 0.045 0.955 22 H 0.034 0.966 23 H 0.037 0.963 24 H 0.082 0.918 25 H 0.263 0.737 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.121 0.879 29 H 0.171 0.829 30 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.459 -6.433 12.081 14.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.004 4.004 3 N -0.322 5.322 4 C -0.379 4.379 5 H 0.067 0.933 6 C -0.204 4.204 7 N -0.579 5.579 8 Si 0.746 3.254 9 H -0.196 1.196 10 H -0.241 1.241 11 H -0.190 1.190 12 C 0.040 3.960 13 C -0.123 4.123 14 C -0.096 4.096 15 C -0.168 4.168 16 C -0.063 4.063 17 N -0.190 5.190 18 C -0.105 4.105 19 Br 0.085 6.915 20 H 0.092 0.908 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.058 0.942 28 H 0.139 0.861 29 H 0.188 0.812 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.337 -7.614 12.623 15.115 hybrid contribution -0.660 1.927 -0.666 2.143 sum 2.677 -5.687 11.957 13.509 Atomic orbital electron populations 1.22203 0.97779 1.01215 1.00734 1.21509 0.93399 0.84271 1.01247 1.44236 1.74447 1.12384 1.01102 1.18707 1.42590 0.89493 0.87144 0.93285 1.25470 0.99516 0.96760 0.98674 1.70037 1.41292 1.07520 1.39016 0.86357 0.81594 0.77849 0.79637 1.19613 1.24130 1.19026 1.20257 0.89045 0.97268 0.89407 1.21577 1.00579 0.93921 0.96217 1.21658 0.94500 0.98265 0.95221 1.22579 0.95484 1.00459 0.98275 1.23327 1.00498 0.88293 0.94171 1.67392 1.01945 1.30493 1.19211 1.22525 0.92670 0.93643 1.01711 1.96530 1.59563 1.46096 1.89328 0.90828 0.93614 0.94648 0.94460 0.90017 0.92812 0.89693 0.94196 0.86125 0.81198 0.78069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.57 10.23 71.98 0.74 -4.84 16 2 C 0.12 4.71 6.35 86.38 0.55 5.26 16 3 N -0.60 -27.73 2.29 -706.33 -1.62 -29.34 16 4 C -0.25 -13.70 9.94 84.03 0.84 -12.86 16 5 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 6 C -0.01 -0.41 5.16 84.86 0.44 0.02 16 7 N -0.93 -55.28 13.97 21.65 0.30 -54.97 16 8 Si 0.91 44.04 24.63 68.60 1.69 45.73 16 9 H -0.27 -12.06 6.73 99.48 0.67 -11.39 16 10 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.17 7.04 4.47 85.63 0.38 7.42 16 13 C -0.12 -4.62 5.43 -19.75 -0.11 -4.72 16 14 C -0.07 -2.65 9.84 22.46 0.22 -2.43 16 15 C -0.15 -4.38 10.11 22.36 0.23 -4.15 16 16 C 0.10 2.65 11.18 84.68 0.95 3.60 16 17 N -0.48 -16.08 10.32 -190.76 -1.97 -18.05 16 18 C 0.11 4.01 7.16 84.69 0.61 4.62 16 19 Br 0.00 0.01 28.73 -20.37 -0.59 -0.58 16 20 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 21 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.04 1.51 8.07 -2.38 -0.02 1.49 16 24 H 0.08 2.84 4.15 -2.39 -0.01 2.83 16 25 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 26 H 0.08 3.21 6.72 -2.39 -0.02 3.19 16 27 H 0.04 1.83 1.85 -2.39 0.00 1.82 16 28 H 0.12 5.16 7.67 -2.91 -0.02 5.13 16 29 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 30 H 0.20 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -63.24 266.12 3.77 -59.48 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 1.11 Total: 5.84 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 4.83 Total: -8.09 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -3.28 Total: -102.37 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.69 Total: 45.73 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.59 Total: -0.58 kcal Total: -63.24 3.77 -59.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876632849.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.820 kcal (2) G-P(sol) polarization free energy of solvation -63.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds