Wall clock time and date at job start Tue Mar 31 2020 05:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48500 * 109.47437 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47091 * 300.00093 * 3 2 1 6 6 H 1.48501 * 109.47496 * 59.99584 * 3 2 1 7 7 C 1.37881 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00363 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99591 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.46893 * 179.97438 * 9 7 2 11 11 C 1.35359 * 126.75195 * 125.00480 * 10 9 7 12 12 N 1.35310 * 106.17627 * 179.97438 * 11 10 9 13 13 C 1.46500 * 125.86466 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46854 * 125.00507 * 13 12 11 15 15 C 1.33561 * 126.02608 * 89.70928 * 14 13 12 16 16 N 1.31866 * 114.51804 * 180.26531 * 15 14 13 17 17 C 1.29140 * 117.07278 * 359.97438 * 16 15 14 18 18 Cl 1.73594 * 124.92152 * 179.97438 * 17 16 15 19 19 S 1.70974 * 110.15590 * 0.02562 * 17 16 15 20 20 N 1.28716 * 108.26451 * 0.26510 * 12 11 10 21 21 N 1.28639 * 110.17874 * 359.55662 * 20 12 11 22 22 H 0.96997 * 119.99824 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46899 * 60.00718 * 9 7 2 24 24 H 1.09001 * 109.47538 * 300.00187 * 9 7 2 25 25 H 1.07993 * 126.90617 * 359.95374 * 11 10 9 26 26 H 1.08998 * 109.47539 * 5.00111 * 13 12 11 27 27 H 1.08998 * 109.46875 * 244.99852 * 13 12 11 28 28 H 1.08002 * 122.73996 * 0.28909 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2304 -3.6446 0.0015 11 6 2.2845 -4.6640 0.8902 12 7 3.3144 -5.4501 0.4999 13 6 3.7553 -6.6794 1.1637 14 6 3.7691 -7.8106 0.1680 15 6 4.7993 -8.1643 -0.6049 16 7 4.5601 -9.1882 -1.4007 17 6 3.3837 -9.7175 -1.3401 18 17 2.8511 -11.0674 -2.2927 19 16 2.4264 -8.8951 -0.1867 20 7 3.8439 -4.9289 -0.5511 21 7 3.2168 -3.8541 -0.8775 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5575 -0.8881 24 1 0.6247 -2.5563 0.8919 25 1 1.6363 -4.8187 1.7400 26 1 3.0701 -6.9193 1.9767 27 1 4.7587 -6.5361 1.5645 28 1 5.7506 -7.6536 -0.5799 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881283729.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:06 Heat of formation + Delta-G solvation = 140.084828 kcal Electronic energy + Delta-G solvation = -16573.938674 eV Core-core repulsion = 13587.456928 eV Total energy + Delta-G solvation = -2986.481746 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 284.019 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.61279 -40.11575 -37.37196 -35.20277 -33.30714 -31.19597 -31.01645 -27.69219 -27.15184 -24.96009 -23.43253 -21.61749 -20.73444 -20.35683 -18.68164 -17.08388 -16.80110 -16.15876 -15.45192 -15.19619 -14.75470 -14.55891 -14.16730 -13.97395 -13.40796 -12.63654 -12.25546 -12.19944 -11.90344 -11.78467 -11.68163 -11.06229 -10.76306 -10.69210 -10.21194 -10.17238 -9.83885 -9.74487 -9.54462 -9.33916 -9.28880 -8.47196 -8.19049 -6.01307 -4.01938 -0.01901 0.29513 1.09526 1.45412 2.09487 2.21771 2.84337 3.34082 3.38424 3.42809 3.50230 4.02614 4.27902 4.31279 4.49827 4.86019 5.06390 5.12995 5.35696 5.57225 5.75600 5.99629 6.19693 7.02541 7.04544 7.07421 7.49091 7.58426 7.96668 8.34135 9.01743 9.22127 9.61163 11.09805 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.040111 B = 0.003202 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.890976 B = 8742.631591 C = 8890.036714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.091 3.909 10 C 0.038 3.962 11 C -0.083 4.083 12 N -0.310 5.310 13 C 0.205 3.795 14 C -0.251 4.251 15 C 0.093 3.907 16 N -0.462 5.462 17 C 0.073 3.927 18 Cl 0.029 6.971 19 S 0.216 5.784 20 N -0.101 5.101 21 N -0.256 5.256 22 H 0.261 0.739 23 H 0.040 0.960 24 H 0.037 0.963 25 H 0.183 0.817 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.476 -22.366 4.161 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.052 3.948 10 C -0.098 4.098 11 C -0.230 4.230 12 N -0.106 5.106 13 C 0.081 3.919 14 C -0.373 4.373 15 C -0.060 4.060 16 N -0.178 5.178 17 C -0.230 4.230 18 Cl 0.057 6.943 19 S 0.467 5.533 20 N -0.080 5.080 21 N -0.124 5.124 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.201 0.799 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 4.730 -22.907 2.967 23.577 hybrid contribution 0.420 1.120 0.705 1.389 sum 5.151 -21.787 3.672 22.686 Atomic orbital electron populations 1.69952 1.05971 1.26691 1.51128 1.24977 0.94885 0.99266 0.95318 0.86454 0.80200 0.83416 0.77495 1.19703 1.20939 1.21093 1.21073 0.93285 0.89712 1.50118 0.92211 1.17754 0.90883 0.87561 0.98577 1.23059 0.97693 0.97618 0.91450 1.23402 0.97443 0.96139 1.06062 1.47198 1.23114 1.18916 1.21360 1.20019 1.04093 0.76818 0.91017 1.26041 0.97488 1.05152 1.08665 1.21656 1.00867 0.92509 0.90988 1.66072 1.18042 1.10608 1.23109 1.27134 0.94854 0.99456 1.01508 1.98442 1.87279 1.39102 1.69497 1.84187 1.14203 1.22555 1.32343 1.78224 1.21430 1.06963 1.01376 1.75111 1.06830 1.07083 1.23399 0.92952 0.94251 0.94467 0.79945 0.86542 0.86326 0.79287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.29 55.43 0.74 -25.62 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 15 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 15 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.28 -6.88 7.11 56.52 0.40 -6.47 15 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 7 C -0.50 -14.32 9.09 -34.44 -0.31 -14.64 15 8 H 0.06 1.74 7.74 -52.49 -0.41 1.34 15 9 C 0.09 2.33 5.55 -29.04 -0.16 2.17 15 10 C 0.04 0.85 6.44 -82.77 -0.53 0.32 15 11 C -0.08 -1.40 11.49 -17.04 -0.20 -1.60 15 12 N -0.31 -4.71 3.43 -62.45 -0.21 -4.92 15 13 C 0.21 1.89 6.99 -5.19 -0.04 1.85 15 14 C -0.25 -2.51 5.97 -35.95 -0.21 -2.72 15 15 C 0.09 1.00 11.25 -19.17 -0.22 0.79 15 16 N -0.46 -5.66 10.56 -12.81 -0.14 -5.79 15 17 C 0.07 0.80 8.03 51.63 0.41 1.21 15 18 Cl 0.03 0.28 29.33 -51.86 -1.52 -1.24 15 19 S 0.22 2.02 23.22 -107.50 -2.50 -0.48 15 20 N -0.10 -1.96 12.93 60.35 0.78 -1.18 15 21 N -0.26 -5.97 12.40 33.29 0.41 -5.56 15 22 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 23 H 0.04 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.04 0.94 8.12 -51.93 -0.42 0.52 15 25 H 0.18 2.36 8.06 -52.49 -0.42 1.93 15 26 H 0.12 0.69 8.07 -51.93 -0.42 0.27 15 27 H 0.12 0.83 8.14 -51.93 -0.42 0.40 15 28 H 0.19 1.73 8.06 -52.49 -0.42 1.31 15 LS Contribution 290.91 15.07 4.38 4.38 Total: -1.00 -33.94 290.91 -6.50 -40.44 By element: Atomic # 1 Polarization: -3.73 SS G_CDS: -2.07 Total: -5.81 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -1.35 Total: -11.11 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 1.58 Total: -43.08 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.50 Total: -0.48 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.52 Total: -1.24 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.94 -6.50 -40.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881283729.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.527 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds