Wall clock time and date at job start Tue Mar 31 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38019 * 119.57069 * 2 1 4 4 C 1.38957 * 119.31914 * 179.69715 * 3 2 1 5 5 Br 1.89099 * 120.76134 * 180.27586 * 4 3 2 6 6 C 1.38454 * 118.47967 * 0.54424 * 4 3 2 7 7 C 1.39051 * 119.08561 * 359.45470 * 6 4 3 8 8 N 1.39015 * 119.69810 * 180.30495 * 7 6 4 9 9 C 1.46497 * 119.99959 * 4.99826 * 8 7 6 10 10 C 1.46502 * 119.99823 * 185.00484 * 8 7 6 11 11 C 1.50693 * 109.47489 * 89.99667 * 10 8 7 12 12 H 1.08004 * 120.00286 * 359.97438 * 11 10 8 13 13 C 1.37879 * 119.99966 * 180.02562 * 11 10 8 14 14 N 1.31508 * 120.00189 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99834 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47007 * 89.99579 * 15 13 11 17 17 H 1.48496 * 109.46806 * 209.99553 * 15 13 11 18 18 H 1.48497 * 109.47169 * 330.00012 * 15 13 11 19 19 N 1.31963 * 119.56679 * 179.97438 * 2 1 3 20 20 H 1.08995 * 109.47337 * 270.02755 * 1 2 3 21 21 H 1.09004 * 109.46553 * 30.02639 * 1 2 3 22 22 H 1.09004 * 109.46644 * 150.02269 * 1 2 3 23 23 H 1.08003 * 120.34450 * 359.97438 * 3 2 1 24 24 H 1.08002 * 120.45872 * 179.73720 * 6 4 3 25 25 H 1.08997 * 109.47068 * 90.00631 * 9 8 7 26 26 H 1.09006 * 109.46836 * 210.00397 * 9 8 7 27 27 H 1.09000 * 109.47221 * 330.00233 * 9 8 7 28 28 H 1.09005 * 109.46764 * 210.00022 * 10 8 7 29 29 H 1.09000 * 109.47117 * 329.99124 * 10 8 7 30 30 H 0.97001 * 120.00469 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1881 1.2004 0.0000 4 6 3.5777 1.1943 0.0064 5 35 4.5519 2.8150 0.0145 6 6 4.2326 -0.0255 0.0010 7 6 3.4817 -1.1959 0.0011 8 7 4.1261 -2.4276 0.0021 9 6 5.5855 -2.4907 0.1138 10 6 3.3458 -3.6626 -0.1085 11 6 3.1890 -4.0293 -1.5617 12 1 3.6265 -3.4047 -2.3266 13 6 2.4862 -5.1617 -1.9150 14 7 1.9531 -5.9220 -0.9838 15 14 2.2913 -5.6159 -3.7165 16 1 3.4194 -6.4876 -4.1321 17 1 1.0092 -6.3402 -3.9084 18 1 2.2904 -4.3808 -4.5411 19 7 2.1582 -1.1478 0.0005 20 1 -0.3634 0.0005 1.0276 21 1 -0.3632 0.8898 -0.5143 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6467 2.1349 -0.0004 24 1 5.3118 -0.0675 0.0015 25 1 5.8673 -2.5474 1.1651 26 1 5.9520 -3.3743 -0.4089 27 1 6.0229 -1.5974 -0.3320 28 1 3.8623 -4.4668 0.4155 29 1 2.3622 -3.5120 0.3364 30 1 1.4590 -6.7189 -1.2323 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891400368.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:51 Heat of formation + Delta-G solvation = 43.790428 kcal Electronic energy + Delta-G solvation = -14706.693220 eV Core-core repulsion = 12162.395622 eV Total energy + Delta-G solvation = -2544.297597 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.85418 -36.16486 -33.21562 -32.71110 -31.14849 -29.74210 -28.14368 -26.79962 -25.46968 -23.08285 -21.23552 -20.39434 -16.70255 -16.45533 -16.16129 -15.27092 -14.56273 -14.44561 -13.78491 -13.45357 -13.32096 -12.61461 -12.27950 -12.16321 -11.91717 -11.76010 -11.50619 -11.20435 -11.14181 -10.87905 -10.58182 -10.25136 -10.12249 -9.79098 -9.08468 -8.89367 -8.75035 -8.43607 -6.86705 -6.02927 -4.09991 1.50773 1.67783 1.79253 3.28328 3.35042 3.39340 3.75485 4.28168 4.43004 4.84857 5.27872 5.33452 5.39514 5.50289 5.67029 5.75891 5.88306 5.92518 5.95161 6.11331 6.18506 6.34040 6.44603 6.82678 7.06365 7.45558 7.79909 7.92913 8.20737 8.23609 8.79114 8.96389 9.54473 11.02210 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.004976 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.035726 B = 5625.461831 C = 6023.111624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.189 3.811 3 C -0.238 4.238 4 C 0.004 3.996 5 Br -0.059 7.059 6 C -0.242 4.242 7 C 0.433 3.567 8 N -0.588 5.588 9 C 0.095 3.905 10 C 0.251 3.749 11 C -0.524 4.524 12 H 0.055 0.945 13 C 0.063 3.937 14 N -0.894 5.894 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.275 1.275 19 N -0.513 5.513 20 H 0.076 0.924 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.130 0.870 24 H 0.135 0.865 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.029 0.971 29 H 0.052 0.948 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.679 16.020 3.472 16.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.047 3.953 3 C -0.263 4.263 4 C -0.083 4.083 5 Br 0.026 6.974 6 C -0.270 4.270 7 C 0.194 3.806 8 N -0.295 5.295 9 C -0.049 4.049 10 C 0.132 3.868 11 C -0.563 4.563 12 H 0.073 0.927 13 C -0.139 4.139 14 N -0.533 5.533 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.200 1.200 19 N -0.231 5.231 20 H 0.095 0.905 21 H 0.090 0.910 22 H 0.100 0.900 23 H 0.148 0.852 24 H 0.153 0.847 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.622 15.413 3.506 16.217 hybrid contribution 0.240 0.063 -1.077 1.105 sum 3.861 15.476 2.429 16.135 Atomic orbital electron populations 1.20707 0.88953 1.03443 1.02871 1.20961 0.96504 0.86951 0.90909 1.21347 0.92148 0.99478 1.13371 1.21649 0.94316 0.90790 1.01594 1.96634 1.74142 1.29024 1.97590 1.21266 1.00791 0.90598 1.14373 1.18273 0.87953 0.85899 0.88500 1.47111 1.05505 1.04201 1.72659 1.21634 0.80355 1.02540 1.00335 1.19354 0.91952 0.78479 0.97006 1.21451 1.34067 1.08538 0.92279 0.92667 1.24903 0.95300 0.96169 0.97554 1.69926 1.35643 1.15319 1.32457 0.86540 0.77526 0.78464 0.85146 1.20680 1.21066 1.19993 1.67210 1.07786 1.28787 1.19303 0.90520 0.90994 0.89982 0.85194 0.84744 0.93735 0.90502 0.92337 0.95304 0.93005 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.17 36.01 0.37 -1.06 16 2 C 0.19 3.35 6.78 -82.62 -0.56 2.79 16 3 C -0.24 -3.74 9.52 -39.40 -0.37 -4.12 16 4 C 0.00 0.06 6.27 -39.24 -0.25 -0.19 16 5 Br -0.06 -0.77 33.77 -68.01 -2.30 -3.07 16 6 C -0.24 -4.26 9.05 -39.20 -0.35 -4.61 16 7 C 0.43 9.02 7.37 -155.01 -1.14 7.88 16 8 N -0.59 -12.68 2.97 -183.12 -0.54 -13.23 16 9 C 0.10 1.60 10.28 59.85 0.62 2.22 16 10 C 0.25 6.47 5.22 -5.20 -0.03 6.44 16 11 C -0.52 -14.64 9.39 -34.44 -0.32 -14.97 16 12 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 15 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 N -0.51 -11.07 8.99 -8.68 -0.08 -11.15 16 20 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 21 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 22 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 23 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 24 H 0.13 2.10 6.02 -52.49 -0.32 1.78 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 27 H 0.06 0.85 5.98 -51.93 -0.31 0.54 16 28 H 0.03 0.76 8.07 -51.93 -0.42 0.35 16 29 H 0.05 1.46 7.30 -51.93 -0.38 1.08 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 281.49 15.07 4.24 4.24 Total: -1.00 -30.27 281.49 -8.60 -38.88 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -3.50 Total: -2.98 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -2.14 Total: -3.95 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.11 Total: -49.77 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.30 Total: -3.07 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.27 -8.60 -38.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891400368.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.669 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds