Wall clock time and date at job start Tue Mar 31 2020 05:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76206 * 102.99984 * 2 1 4 4 C 1.39040 * 120.45795 * 359.97438 * 3 2 1 5 5 N 1.31782 * 120.79918 * 179.97438 * 4 3 2 6 6 C 1.31831 * 121.87362 * 0.02562 * 5 4 3 7 7 C 1.38914 * 120.84146 * 359.97438 * 6 5 4 8 8 N 1.39948 * 120.44453 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99684 * 212.72391 * 8 7 6 10 10 O 1.21280 * 120.00294 * 5.26097 * 9 8 7 11 11 C 1.50703 * 119.99642 * 185.26273 * 9 8 7 12 12 S 1.81007 * 109.46838 * 179.97438 * 11 9 8 13 13 C 1.76195 * 99.99769 * 180.02562 * 12 11 9 14 14 H 1.08004 * 120.00421 * 359.97438 * 13 12 11 15 15 C 1.38804 * 120.00100 * 180.02562 * 13 12 11 16 16 N 1.31628 * 119.99716 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00240 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47282 * 89.99688 * 17 15 13 19 19 H 1.48498 * 109.46729 * 209.99829 * 17 15 13 20 20 H 1.48497 * 109.46903 * 329.99381 * 17 15 13 21 21 C 1.39118 * 119.10873 * 359.97438 * 7 6 5 22 22 H 1.08996 * 109.47125 * 300.00045 * 1 2 3 23 23 H 1.09009 * 109.46964 * 60.00112 * 1 2 3 24 24 H 1.09002 * 109.47001 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.60516 * 359.95743 * 4 3 2 26 26 H 1.07996 * 119.57284 * 179.97438 * 6 5 4 27 27 H 0.96995 * 120.00260 * 32.71799 * 8 7 6 28 28 H 1.08990 * 109.47335 * 299.99624 * 11 9 8 29 29 H 1.09005 * 109.47130 * 59.99893 * 11 9 8 30 30 H 0.97001 * 120.00103 * 180.02562 * 16 15 13 31 31 H 1.08001 * 120.85399 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.2011 2.6732 -0.0005 5 7 1.4899 3.9590 0.0000 6 6 2.7348 4.3929 0.0005 7 6 3.7998 3.5010 0.0011 8 7 5.1181 3.9708 0.0011 9 6 6.0826 3.2716 -0.6295 10 8 5.7935 2.2875 -1.2767 11 6 7.5202 3.7128 -0.5302 12 16 8.5660 2.5784 -1.4766 13 6 10.1441 3.3094 -1.1940 14 1 10.2267 4.1973 -0.5846 15 6 11.2811 2.7448 -1.7552 16 7 11.1804 1.6629 -2.4983 17 14 12.9542 3.5193 -1.4550 18 1 13.5629 2.9263 -0.2373 19 1 13.8346 3.2639 -2.6232 20 1 12.7950 4.9836 -1.2660 21 6 3.5383 2.1347 0.0016 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 0.1679 2.3586 -0.0017 26 1 2.9290 5.4553 0.0005 27 1 5.3377 4.7995 0.4548 28 1 7.6196 4.7206 -0.9329 29 1 7.8308 3.7067 0.5146 30 1 11.9750 1.2681 -2.8902 31 1 4.3448 1.4164 0.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891873714.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:21 Heat of formation + Delta-G solvation = 1.446094 kcal Electronic energy + Delta-G solvation = -16665.803753 eV Core-core repulsion = 13778.894231 eV Total energy + Delta-G solvation = -2886.909522 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.039 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.77502 -39.00866 -35.04922 -32.49375 -32.41682 -31.10669 -29.47452 -28.40280 -25.56268 -24.10208 -23.49579 -20.62179 -18.63301 -17.81249 -17.18002 -16.88882 -16.24686 -16.03102 -15.05455 -14.85941 -14.59214 -14.38655 -14.17575 -13.73433 -13.53610 -13.22476 -12.96697 -12.70139 -12.42816 -12.18754 -11.11856 -11.10682 -11.07317 -10.89410 -10.80198 -10.60652 -9.95127 -9.89892 -9.41434 -9.12704 -8.49860 -8.34951 -7.66869 -6.59465 -6.28042 -4.00147 0.74926 1.09208 1.21842 2.13339 2.75459 2.76091 3.18845 3.21932 3.26739 3.48954 3.59964 4.13354 4.30953 4.64680 4.73254 4.74393 4.77684 4.81683 5.05311 5.07564 5.14914 5.32217 5.50769 5.71243 5.77663 5.93937 5.98825 6.02272 6.61374 7.28676 7.53568 7.71073 8.23012 8.28743 9.17394 10.79351 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.034633 B = 0.003268 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.290150 B = 8566.759654 C = 9252.460321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S -0.088 6.088 3 C -0.119 4.119 4 C 0.060 3.940 5 N -0.448 5.448 6 C 0.063 3.937 7 C 0.133 3.867 8 N -0.675 5.675 9 C 0.531 3.469 10 O -0.492 6.492 11 C -0.154 4.154 12 S -0.056 6.056 13 C -0.538 4.538 14 H 0.074 0.926 15 C 0.074 3.926 16 N -0.867 5.867 17 Si 0.920 3.080 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.272 1.272 21 C -0.065 4.065 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.110 0.890 25 H 0.155 0.845 26 H 0.161 0.839 27 H 0.414 0.586 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.269 0.731 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.339 2.701 7.514 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.153 5.847 3 C -0.234 4.234 4 C -0.104 4.104 5 N -0.156 5.156 6 C -0.100 4.100 7 C 0.033 3.967 8 N -0.323 5.323 9 C 0.319 3.681 10 O -0.363 6.363 11 C -0.304 4.304 12 S 0.171 5.829 13 C -0.686 4.686 14 H 0.092 0.908 15 C -0.135 4.135 16 N -0.502 5.502 17 Si 0.746 3.254 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.197 1.197 21 C -0.098 4.098 22 H 0.104 0.896 23 H 0.105 0.895 24 H 0.129 0.871 25 H 0.172 0.828 26 H 0.178 0.822 27 H 0.251 0.749 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.680 0.466 6.313 20.673 hybrid contribution 1.430 2.552 1.100 3.125 sum -18.250 3.018 7.413 19.928 Atomic orbital electron populations 1.23731 0.95161 1.07393 1.05790 1.85798 1.05705 1.01281 1.91893 1.22733 0.96988 0.98638 1.05048 1.22671 0.98492 0.88027 1.01216 1.67541 1.20990 1.16502 1.10548 1.22563 0.86667 0.99775 1.01032 1.18694 0.85682 0.93211 0.99142 1.43674 1.05332 1.27739 1.55514 1.20661 0.87047 0.82981 0.77426 1.90739 1.82502 1.25291 1.37801 1.23553 0.93563 1.06603 1.06728 1.85455 0.99448 1.34335 1.63685 1.22847 0.92171 1.15827 1.37738 0.90782 1.25002 0.99273 0.94869 0.94397 1.70009 1.30160 1.19288 1.30698 0.86144 0.81817 0.79371 0.78044 1.20216 1.20708 1.19656 1.21260 0.95587 0.95203 0.97786 0.89600 0.89527 0.87115 0.82823 0.82219 0.74907 0.88627 0.88538 0.92074 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.16 101.05 0.93 -0.06 16 2 S -0.09 -0.98 22.58 -107.50 -2.43 -3.41 16 3 C -0.12 -1.53 6.13 -38.92 -0.24 -1.77 16 4 C 0.06 0.70 10.54 -17.28 -0.18 0.52 16 5 N -0.45 -5.61 10.35 -12.89 -0.13 -5.74 16 6 C 0.06 0.73 11.11 -17.30 -0.19 0.54 16 7 C 0.13 1.78 6.31 -83.57 -0.53 1.25 16 8 N -0.68 -8.66 5.35 -9.79 -0.05 -8.72 16 9 C 0.53 9.29 7.61 -10.98 -0.08 9.21 16 10 O -0.49 -10.51 13.55 5.56 0.08 -10.44 16 11 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 12 S -0.06 -1.45 20.57 -107.50 -2.21 -3.66 16 13 C -0.54 -14.86 9.50 30.94 0.29 -14.57 16 14 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 15 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 16 N -0.87 -25.66 13.22 55.49 0.73 -24.92 16 17 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 21 C -0.06 -0.96 8.53 -38.90 -0.33 -1.29 16 22 H 0.09 0.46 7.76 -51.93 -0.40 0.06 16 23 H 0.09 0.50 7.76 -51.92 -0.40 0.10 16 24 H 0.11 0.54 8.14 -51.92 -0.42 0.12 16 25 H 0.15 1.35 5.90 -52.49 -0.31 1.04 16 26 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 27 H 0.41 3.68 8.82 -40.82 -0.36 3.32 16 28 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 29 H 0.10 1.64 8.14 -51.91 -0.42 1.22 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.16 2.61 6.48 -52.49 -0.34 2.27 16 LS Contribution 302.37 15.07 4.56 4.56 Total: -1.00 -33.95 302.37 -7.74 -41.70 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -3.05 Total: 1.55 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -0.21 Total: -6.86 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.55 Total: -39.38 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -4.64 Total: -7.07 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.95 -7.74 -41.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891873714.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.144 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds