Wall clock time and date at job start Tue Mar 31 2020 05:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00169 * 2 1 4 4 H 1.48493 * 109.46782 * 269.99904 * 3 2 1 5 5 H 1.48503 * 109.46800 * 29.99587 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99598 * 3 2 1 7 7 C 1.38802 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99838 * 359.97438 * 7 2 1 9 9 S 1.76202 * 119.99989 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00066 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21303 * 119.99816 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.40465 * 119.99684 * 179.72950 * 13 11 10 15 15 N 1.32046 * 122.83098 * 0.02562 * 14 13 11 16 16 C 1.29067 * 117.09771 * 179.97438 * 15 14 13 17 17 S 1.70951 * 110.29329 * 0.02562 * 16 15 14 18 18 C 1.34168 * 122.83046 * 179.73027 * 14 13 11 19 19 C 1.50699 * 126.03865 * 0.02562 * 18 14 13 20 20 C 1.53003 * 117.49612 * 188.74587 * 19 18 14 21 21 C 1.53001 * 117.50019 * 120.08622 * 19 18 14 22 22 H 0.97003 * 119.99714 * 0.02562 * 1 2 3 23 23 H 1.09009 * 109.46810 * 59.99567 * 10 9 7 24 24 H 1.08998 * 109.46824 * 300.00077 * 10 9 7 25 25 H 0.97001 * 120.00485 * 359.71840 * 13 11 10 26 26 H 1.08010 * 124.85354 * 180.02562 * 16 15 14 27 27 H 1.08999 * 115.54761 * 334.41309 * 19 18 14 28 28 H 1.09001 * 117.49823 * 0.02562 * 20 19 18 29 29 H 1.08997 * 117.49425 * 145.01897 * 20 19 18 30 30 H 1.08998 * 117.49971 * 214.97225 * 21 19 18 31 31 H 1.08997 * 117.49388 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5731 -3.2325 0.0026 12 8 6.3442 -2.2961 0.0014 13 7 6.0456 -4.4947 -0.0021 14 6 7.4311 -4.7259 -0.0077 15 7 8.3198 -3.7492 -0.0082 16 6 9.5653 -4.0877 -0.0131 17 16 9.7170 -5.7905 -0.0186 18 6 7.9631 -5.9576 -0.0073 19 6 7.1960 -7.2547 -0.0015 20 6 7.9918 -8.5451 0.2043 21 6 7.4172 -8.2115 -1.1747 22 1 -0.4850 0.8401 -0.0004 23 1 3.6439 -3.4322 -0.8874 24 1 3.6433 -3.4309 0.8926 25 1 5.4290 -5.2435 -0.0014 26 1 10.3934 -3.3943 -0.0137 27 1 6.1950 -7.2069 0.4272 28 1 9.0702 -8.4558 0.3360 29 1 7.5141 -9.3464 0.7681 30 1 6.5618 -8.7936 -1.5176 31 1 8.1179 -7.9030 -1.9505 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893277455.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:02 Heat of formation + Delta-G solvation = 48.025827 kcal Electronic energy + Delta-G solvation = -16896.470523 eV Core-core repulsion = 14011.580849 eV Total energy + Delta-G solvation = -2884.889674 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.039 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.70163 -38.51356 -37.45545 -34.33694 -32.45630 -30.35974 -28.82217 -25.70439 -25.46282 -22.78805 -22.31374 -21.64520 -19.63014 -18.16744 -17.90921 -17.08286 -16.02792 -15.62948 -15.45625 -14.98225 -14.83345 -14.31097 -14.20337 -13.95879 -13.45668 -12.81346 -12.44319 -12.29241 -12.10162 -11.92382 -11.34247 -11.28190 -11.01947 -10.81561 -10.64233 -10.60358 -9.96133 -9.83138 -9.28932 -9.23510 -9.01751 -8.53231 -8.09692 -6.94525 -6.30579 -4.02871 0.51919 1.15619 1.51293 2.47848 2.67068 3.16271 3.21181 3.32776 3.50186 3.54973 3.57995 4.13997 4.29771 4.33405 4.45330 4.61915 4.71513 4.99107 5.08599 5.11150 5.26444 5.30172 5.47536 5.55868 5.65234 5.69029 5.73501 5.93910 6.47368 7.07057 7.79914 7.92437 8.39578 8.40820 9.15493 10.78584 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.034013 B = 0.003659 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.022720 B = 7651.452098 C = 8391.035835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.089 0.911 9 S -0.136 6.136 10 C -0.122 4.122 11 C 0.521 3.479 12 O -0.459 6.459 13 N -0.652 5.652 14 C 0.321 3.679 15 N -0.444 5.444 16 C 0.040 3.960 17 S 0.122 5.878 18 C -0.250 4.250 19 C -0.074 4.074 20 C -0.172 4.172 21 C -0.168 4.168 22 H 0.271 0.729 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.417 0.583 26 H 0.203 0.797 27 H 0.120 0.880 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.349 -17.978 -0.265 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.090 5.910 10 C -0.273 4.273 11 C 0.305 3.695 12 O -0.326 6.326 13 N -0.302 5.302 14 C 0.096 3.904 15 N -0.159 5.159 16 C -0.259 4.259 17 S 0.373 5.627 18 C -0.375 4.375 19 C -0.094 4.094 20 C -0.209 4.209 21 C -0.206 4.206 22 H 0.081 0.919 23 H 0.118 0.882 24 H 0.119 0.881 25 H 0.254 0.746 26 H 0.220 0.780 27 H 0.138 0.862 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 20.090 -16.269 -0.267 25.853 hybrid contribution -2.008 -0.425 0.001 2.052 sum 18.082 -16.694 -0.266 24.611 Atomic orbital electron populations 1.69936 1.05912 1.27809 1.47956 1.24700 0.94444 0.98957 0.93111 0.86746 0.81920 0.83285 0.79991 1.19157 1.19872 1.15890 1.22309 0.88169 0.97598 1.58962 0.89305 1.84848 1.09389 0.99342 1.97436 1.23276 0.92911 1.05000 1.06097 1.20584 0.90962 0.81864 0.76046 1.90809 1.58042 1.41005 1.42787 1.43527 1.02468 1.09826 1.74421 1.17211 0.86179 0.86830 1.00187 1.66093 1.00138 1.34022 1.15624 1.28336 0.96994 0.97400 1.03192 1.83687 1.02595 1.06696 1.69766 1.24186 0.95954 0.96633 1.20768 1.20087 0.98990 0.85807 1.04557 1.23085 0.99945 0.97821 1.00079 1.23142 1.03739 1.02030 0.91665 0.91898 0.88168 0.88146 0.74633 0.77996 0.86233 0.88560 0.87901 0.87923 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.53 13.97 55.49 0.78 -25.76 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 3 Si 0.86 21.86 27.74 -169.99 -4.72 17.14 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.23 -6.01 6.74 56.52 0.38 -5.63 16 7 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 10 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 11 C 0.52 9.76 7.82 -10.98 -0.09 9.67 16 12 O -0.46 -10.46 14.36 5.54 0.08 -10.38 16 13 N -0.65 -9.43 5.43 -12.35 -0.07 -9.49 16 14 C 0.32 4.65 7.37 -155.64 -1.15 3.51 16 15 N -0.44 -7.11 8.43 -14.68 -0.12 -7.23 16 16 C 0.04 0.46 12.22 51.60 0.63 1.09 16 17 S 0.12 1.10 22.15 -107.50 -2.38 -1.28 16 18 C -0.25 -2.78 6.22 -35.74 -0.22 -3.00 16 19 C -0.07 -0.62 5.83 -91.77 -0.54 -1.16 16 20 C -0.17 -1.15 10.07 -26.69 -0.27 -1.42 16 21 C -0.17 -1.18 10.24 -26.69 -0.27 -1.45 16 22 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.10 1.77 8.14 -51.91 -0.42 1.35 16 24 H 0.10 1.78 8.14 -51.92 -0.42 1.35 16 25 H 0.42 4.42 7.66 -40.82 -0.31 4.11 16 26 H 0.20 1.60 8.06 -52.48 -0.42 1.17 16 27 H 0.12 0.88 7.44 -51.93 -0.39 0.49 16 28 H 0.10 0.64 7.34 -51.93 -0.38 0.26 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 300.60 15.07 4.53 4.53 Total: -1.00 -35.73 300.60 -8.56 -44.28 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -3.19 Total: 0.54 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.46 Total: -6.89 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.58 Total: -42.48 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.14 kcal Atomic # 16 Polarization: -2.38 SS G_CDS: -4.38 Total: -6.75 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.73 -8.56 -44.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893277455.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.309 kcal (2) G-P(sol) polarization free energy of solvation -35.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds