Wall clock time and date at job start Tue Mar 31 2020 05:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00088 * 2 1 4 4 H 1.48497 * 109.47371 * 270.00130 * 3 2 1 5 5 H 1.48501 * 109.47233 * 29.99993 * 3 2 1 6 6 H 1.48500 * 109.47178 * 149.99384 * 3 2 1 7 7 C 1.37879 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99681 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00380 * 0.02562 * 7 2 1 10 10 S 1.80994 * 109.47181 * 179.97438 * 9 7 2 11 11 C 1.76203 * 99.99917 * 180.02562 * 10 9 7 12 12 C 1.39643 * 120.53105 * 179.97438 * 11 10 9 13 13 C 1.38233 * 118.32134 * 180.02562 * 12 11 10 14 14 Cl 1.73592 * 120.41411 * 180.02562 * 13 12 11 15 15 N 1.32721 * 119.17416 * 0.02562 * 13 12 11 16 16 C 1.31774 * 120.99982 * 359.97438 * 15 13 12 17 17 C 1.50698 * 119.07037 * 179.97438 * 16 15 13 18 18 C 1.53784 * 113.61533 * 37.50271 * 17 16 15 19 19 C 1.53780 * 87.08024 * 220.01575 * 18 17 16 20 20 C 1.53780 * 113.61787 * 300.00246 * 17 16 15 21 21 N 1.31753 * 121.85389 * 0.02562 * 16 15 13 22 22 H 0.97006 * 120.00108 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.46798 * 59.99593 * 9 7 2 24 24 H 1.09002 * 109.47017 * 300.00128 * 9 7 2 25 25 H 1.07996 * 120.83521 * 0.04495 * 12 11 10 26 26 H 1.08998 * 112.84705 * 168.80459 * 17 16 15 27 27 H 1.09000 * 113.61362 * 334.56137 * 18 17 16 28 28 H 1.09002 * 113.61760 * 105.46730 * 18 17 16 29 29 H 1.09000 * 113.61469 * 270.87922 * 19 18 17 30 30 H 1.09002 * 113.61507 * 139.98045 * 19 18 17 31 31 H 1.09005 * 113.61491 * 254.53103 * 20 17 16 32 32 H 1.08996 * 113.61289 * 25.43486 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4272 -3.8749 0.0005 11 6 1.3071 -5.2350 -0.0002 12 6 1.7846 -6.5473 -0.0010 13 6 0.8654 -7.5797 -0.0021 14 17 1.3991 -9.2315 -0.0024 15 7 -0.4303 -7.2922 -0.0030 16 6 -0.8483 -6.0425 -0.0022 17 6 -2.3297 -5.7659 -0.0039 18 6 -3.1415 -6.7525 0.8520 19 6 -4.2000 -6.7269 -0.2633 20 6 -3.0631 -6.3442 -1.2256 21 7 -0.0075 -5.0282 -0.0012 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8453 -6.7503 -0.0004 26 1 -2.5650 -4.7198 0.1919 27 1 -2.6601 -7.7227 0.9748 28 1 -3.4897 -6.3293 1.7942 29 1 -4.9478 -5.9439 -0.1377 30 1 -4.6384 -7.7028 -0.4717 31 1 -3.3479 -5.5913 -1.9605 32 1 -2.5602 -7.2027 -1.6706 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894179742.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:40 Heat of formation + Delta-G solvation = 45.640320 kcal Electronic energy + Delta-G solvation = -17141.586379 eV Core-core repulsion = 14254.549555 eV Total energy + Delta-G solvation = -2887.036823 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.91921 -38.32952 -36.83508 -33.43690 -33.18477 -31.92718 -28.69472 -26.60727 -25.59239 -24.62194 -23.41160 -22.45260 -19.59098 -17.98735 -17.52169 -16.45427 -15.65374 -15.46510 -15.17595 -15.03321 -14.74238 -14.44876 -13.04004 -12.74668 -12.64859 -12.54498 -12.43682 -12.38164 -11.87195 -11.55012 -11.13297 -10.99211 -10.94050 -10.70061 -10.60556 -10.52956 -10.33786 -10.29357 -9.72231 -9.38192 -9.34988 -9.07789 -8.69072 -7.16198 -6.26470 -4.34340 0.93479 1.01553 1.53980 2.09768 3.20958 3.25104 3.27360 3.35943 3.67312 4.04521 4.28019 4.47619 4.70876 4.74150 4.87597 4.96594 5.04726 5.10390 5.32101 5.48160 5.70203 5.78652 5.85158 5.92001 5.98343 6.16215 6.24078 6.53242 6.95824 7.03845 7.15230 7.62256 7.86841 8.16446 8.66712 9.29818 10.83848 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.004777 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.837987 B = 5860.447262 C = 7336.064331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.529 4.529 8 H 0.067 0.933 9 C 0.074 3.926 10 S -0.064 6.064 11 C 0.182 3.818 12 C -0.213 4.213 13 C 0.233 3.767 14 Cl -0.026 7.026 15 N -0.534 5.534 16 C 0.365 3.635 17 C -0.050 4.050 18 C -0.123 4.123 19 C -0.138 4.138 20 C -0.122 4.122 21 N -0.508 5.508 22 H 0.267 0.733 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.155 0.845 26 H 0.121 0.879 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.166 -14.536 -0.198 14.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.569 4.569 8 H 0.085 0.915 9 C -0.073 4.073 10 S 0.178 5.822 11 C -0.075 4.075 12 C -0.244 4.244 13 C 0.060 3.940 14 Cl 0.002 6.998 15 N -0.254 5.254 16 C 0.094 3.906 17 C -0.071 4.071 18 C -0.161 4.161 19 C -0.175 4.175 20 C -0.160 4.160 21 N -0.227 5.227 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.172 0.828 26 H 0.139 0.861 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.950 -14.230 -0.191 14.534 hybrid contribution 0.120 0.485 -0.009 0.500 sum -2.830 -13.745 -0.201 14.035 Atomic orbital electron populations 1.69970 1.06112 1.27482 1.48377 1.24933 0.94966 0.99207 0.94290 0.86357 0.79743 0.82166 0.78433 1.20251 1.20848 1.19508 1.20658 0.93302 0.88838 1.54105 0.91514 1.21336 0.93780 0.89697 1.02468 1.85822 1.13009 0.97336 1.86007 1.24220 0.94646 0.97436 0.91170 1.22145 1.01944 0.91350 1.08994 1.21650 0.90189 0.87216 0.94919 1.98401 1.88282 1.16874 1.96224 1.67434 1.15491 1.23584 1.18873 1.22939 0.96869 0.82246 0.88539 1.21539 0.84444 1.01629 0.99447 1.22944 0.96173 0.99857 0.97163 1.22781 0.96382 1.01852 0.96520 1.22895 0.96444 1.00973 0.95702 1.68877 1.01896 1.35250 1.16634 0.92323 0.92850 0.92843 0.82751 0.86145 0.88704 0.91257 0.89939 0.91158 0.90909 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.03 13.29 55.43 0.74 -24.30 16 2 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 3 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.53 -14.29 9.13 -34.44 -0.31 -14.61 16 8 H 0.07 1.76 7.71 -52.48 -0.40 1.36 16 9 C 0.07 1.88 4.63 36.00 0.17 2.04 16 10 S -0.06 -1.33 22.01 -107.50 -2.37 -3.69 16 11 C 0.18 3.49 7.01 -16.49 -0.12 3.37 16 12 C -0.21 -3.43 9.75 -39.06 -0.38 -3.81 16 13 C 0.23 3.61 7.33 -17.17 -0.13 3.48 16 14 Cl -0.03 -0.33 29.15 -51.86 -1.51 -1.84 16 15 N -0.53 -8.72 9.28 -7.94 -0.07 -8.79 16 16 C 0.36 6.33 6.88 -157.25 -1.08 5.25 16 17 C -0.05 -0.73 4.16 -90.96 -0.38 -1.10 16 18 C -0.12 -1.47 7.56 -25.92 -0.20 -1.66 16 19 C -0.14 -1.41 8.08 -25.92 -0.21 -1.61 16 20 C -0.12 -1.49 7.60 -25.92 -0.20 -1.68 16 21 N -0.51 -10.16 9.20 -9.53 -0.09 -10.24 16 22 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 23 H 0.05 1.44 8.14 -51.91 -0.42 1.02 16 24 H 0.05 1.45 8.14 -51.92 -0.42 1.02 16 25 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 26 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 27 H 0.09 1.19 7.41 -51.93 -0.38 0.81 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.10 8.00 -51.93 -0.42 0.68 16 LS Contribution 307.84 15.07 4.64 4.64 Total: -1.00 -28.13 307.84 -10.34 -38.47 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -3.72 Total: -1.34 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -2.93 Total: -8.50 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.57 Total: -43.34 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -2.37 Total: -3.69 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.51 Total: -1.84 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.13 -10.34 -38.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894179742.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.109 kcal (2) G-P(sol) polarization free energy of solvation -28.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds