Wall clock time and date at job start Tue Mar 31 2020 05:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86792 * 120.00161 * 2 1 4 4 H 1.48496 * 109.47287 * 0.02562 * 3 2 1 5 5 H 1.48512 * 109.47143 * 120.00060 * 3 2 1 6 6 H 1.48504 * 109.47350 * 239.99566 * 3 2 1 7 7 C 1.39029 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00024 * 171.89332 * 7 2 1 9 9 N 1.36903 * 120.00065 * 351.89447 * 7 2 1 10 10 C 1.34775 * 119.99815 * 150.71435 * 9 7 2 11 11 O 1.21609 * 120.00467 * 356.43691 * 10 9 7 12 12 C 1.47522 * 119.99744 * 176.42665 * 10 9 7 13 13 C 1.40134 * 120.56713 * 45.92216 * 12 10 9 14 14 C 1.38225 * 118.32548 * 179.97438 * 13 12 10 15 15 C 1.38557 * 119.37908 * 359.97438 * 14 13 12 16 16 Cl 1.73604 * 119.44478 * 179.97438 * 15 14 13 17 17 N 1.32037 * 121.11262 * 0.02562 * 15 14 13 18 18 C 1.31923 * 121.83058 * 359.68036 * 17 15 14 19 19 F 1.35098 * 119.75871 * 180.31390 * 18 17 15 20 20 C 1.46501 * 119.99900 * 330.71915 * 9 7 2 21 21 C 1.52992 * 117.49768 * 313.23642 * 20 9 7 22 22 C 1.53000 * 117.49757 * 244.61222 * 20 9 7 23 23 H 0.96997 * 119.99917 * 355.03425 * 1 2 3 24 24 H 1.07994 * 120.83442 * 359.97438 * 13 12 10 25 25 H 1.08000 * 120.30748 * 179.97438 * 14 13 12 26 26 H 1.09000 * 115.54652 * 98.94488 * 20 9 7 27 27 H 1.09002 * 117.50390 * 0.02562 * 21 20 9 28 28 H 1.09002 * 117.49712 * 145.02195 * 21 20 9 29 29 H 1.08999 * 117.49850 * 214.97983 * 22 20 9 30 30 H 1.09004 * 117.49803 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6176 0.0000 4 1 1.2829 2.7464 0.0006 5 1 3.1016 1.6963 1.2126 6 1 3.1017 1.6963 -1.2125 7 6 2.0089 -1.2041 0.0005 8 1 3.0808 -1.2088 -0.1314 9 7 1.3346 -2.3837 0.1682 10 6 1.8102 -3.5164 -0.3860 11 8 2.8021 -3.4797 -1.0885 12 6 1.1275 -4.8008 -0.1402 13 6 -0.2670 -4.8971 -0.2390 14 6 -0.8584 -6.1233 0.0004 15 6 -0.0627 -7.2095 0.3269 16 17 -0.8037 -8.7503 0.6285 17 7 1.2496 -7.0924 0.4135 18 6 1.8622 -5.9458 0.1890 19 9 3.2080 -5.8749 0.2831 20 6 0.0960 -2.4146 0.9500 21 6 0.0957 -1.6978 2.3017 22 6 0.0992 -3.2269 2.2466 23 1 -0.4850 0.8369 0.0727 24 1 -0.8646 -4.0349 -0.4956 25 1 -1.9307 -6.2336 -0.0665 26 1 -0.8266 -2.3961 0.3699 27 1 1.0169 -1.2028 2.6091 28 1 -0.8273 -1.2075 2.6111 29 1 -0.8215 -3.7424 2.5198 30 1 1.0227 -3.7385 2.5177 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906401296.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:15 Heat of formation + Delta-G solvation = -1.996068 kcal Electronic energy + Delta-G solvation = -20280.036266 eV Core-core repulsion = 16824.720598 eV Total energy + Delta-G solvation = -3455.315668 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.047 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.71192 -40.22857 -38.59314 -36.69112 -36.24467 -33.30382 -32.70718 -31.31650 -30.57070 -25.72840 -24.16504 -23.42200 -21.90232 -21.46789 -19.81723 -18.02286 -17.34705 -17.07612 -16.56736 -15.93707 -15.35525 -15.29766 -14.70498 -14.15830 -13.85682 -13.72410 -13.55782 -13.30687 -12.97727 -12.55784 -12.15092 -11.47940 -11.42664 -11.39514 -11.18814 -10.85995 -10.70893 -10.49281 -10.12264 -9.93754 -9.91018 -9.50224 -9.03271 -8.80651 -8.56407 -7.88530 -6.48633 -4.10390 0.67291 1.07851 1.60809 3.07554 3.16652 3.19620 3.30051 3.67455 3.88455 3.97569 4.45455 4.51733 4.62382 4.82774 4.89983 5.08818 5.25836 5.57425 5.61408 5.79646 5.86290 6.02071 6.03755 6.13794 6.48905 6.58835 6.76019 6.94859 7.38489 7.38896 7.92395 8.26666 8.95930 9.14883 9.71509 10.54777 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.029463 B = 0.005366 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.119069 B = 5216.923238 C = 5739.253177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.044 3.956 3 Si 0.925 3.075 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.308 4.308 8 H 0.099 0.901 9 N -0.398 5.398 10 C 0.486 3.514 11 O -0.565 6.565 12 C -0.151 4.151 13 C -0.010 4.010 14 C -0.168 4.168 15 C 0.206 3.794 16 Cl -0.030 7.030 17 N -0.516 5.516 18 C 0.356 3.644 19 F -0.092 7.092 20 C 0.118 3.882 21 C -0.136 4.136 22 C -0.221 4.221 23 H 0.271 0.729 24 H 0.163 0.837 25 H 0.154 0.846 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.947 -8.164 3.532 11.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.162 4.162 3 Si 0.751 3.249 4 H -0.208 1.208 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.436 4.436 8 H 0.117 0.883 9 N -0.115 5.115 10 C 0.274 3.726 11 O -0.449 6.449 12 C -0.158 4.158 13 C -0.036 4.036 14 C -0.189 4.189 15 C 0.041 3.959 16 Cl -0.001 7.001 17 N -0.233 5.233 18 C 0.202 3.798 19 F -0.070 7.070 20 C 0.013 3.987 21 C -0.174 4.174 22 C -0.260 4.260 23 H 0.081 0.919 24 H 0.180 0.820 25 H 0.172 0.828 26 H 0.128 0.872 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.117 -8.786 3.368 11.222 hybrid contribution 0.005 1.304 0.012 1.304 sum -6.112 -7.482 3.380 10.235 Atomic orbital electron populations 1.69849 1.05950 1.28315 1.45765 1.25353 0.95483 0.99676 0.95684 0.86011 0.79116 0.80403 0.79364 1.20761 1.19764 1.19535 1.19577 0.92862 0.81878 1.49246 0.88329 1.42977 1.20666 1.06531 1.41333 1.17401 0.87559 0.82834 0.84837 1.90696 1.27702 1.85611 1.40900 1.21232 0.94848 0.96267 1.03498 1.21884 0.92795 0.97604 0.91322 1.21739 1.01774 0.91458 1.03927 1.21199 0.88065 0.88234 0.98367 1.98402 1.79304 1.28417 1.94000 1.66050 1.11396 1.26867 1.18991 1.17738 0.78952 0.87872 0.95246 1.91689 1.26837 1.96012 1.92489 1.21294 0.89425 1.02120 0.85908 1.22734 1.02613 0.91906 1.00130 1.23561 1.02021 0.95801 1.04579 0.91858 0.82001 0.82829 0.87198 0.88941 0.89403 0.89271 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.72 10.77 55.50 0.60 -20.13 16 2 C 0.04 1.08 4.85 -17.45 -0.08 0.99 16 3 Si 0.93 19.50 29.56 -169.99 -5.03 14.47 16 4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 7 C -0.31 -8.02 8.70 -14.99 -0.13 -8.15 16 8 H 0.10 2.72 7.56 -52.48 -0.40 2.32 16 9 N -0.40 -9.51 2.91 -108.91 -0.32 -9.83 16 10 C 0.49 11.67 7.00 -12.48 -0.09 11.58 16 11 O -0.57 -15.71 16.31 5.27 0.09 -15.62 16 12 C -0.15 -2.93 4.61 -104.75 -0.48 -3.41 16 13 C -0.01 -0.15 7.70 -38.88 -0.30 -0.45 16 14 C -0.17 -2.13 9.85 -39.47 -0.39 -2.52 16 15 C 0.21 2.97 7.27 -17.35 -0.13 2.85 16 16 Cl -0.03 -0.35 29.10 -51.86 -1.51 -1.86 16 17 N -0.52 -9.01 10.33 -10.29 -0.11 -9.11 16 18 C 0.36 6.90 8.38 -16.86 -0.14 6.76 16 19 F -0.09 -1.92 16.45 2.25 0.04 -1.89 16 20 C 0.12 2.34 2.26 -67.93 -0.15 2.19 16 21 C -0.14 -2.55 8.63 -26.73 -0.23 -2.78 16 22 C -0.22 -3.74 8.50 -26.73 -0.23 -3.96 16 23 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 24 H 0.16 2.31 6.05 -52.49 -0.32 1.99 16 25 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 26 H 0.11 2.14 6.76 -51.93 -0.35 1.79 16 27 H 0.09 1.90 7.96 -51.93 -0.41 1.48 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.49 8.13 -51.93 -0.42 1.07 16 LS Contribution 283.61 15.07 4.27 4.27 Total: -1.00 -28.70 283.61 -6.62 -35.32 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -2.30 Total: 1.29 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -2.35 Total: 3.08 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.17 Total: -39.07 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.09 Total: -15.62 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.51 Total: -1.86 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.70 -6.62 -35.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906401296.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.321 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds