Wall clock time and date at job start Tue Mar 31 2020 05:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99781 * 2 1 4 4 H 1.48497 * 109.47380 * 270.00070 * 3 2 1 5 5 H 1.48502 * 109.47420 * 30.00412 * 3 2 1 6 6 H 1.48501 * 109.46802 * 150.00519 * 3 2 1 7 7 C 1.37874 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00029 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00057 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46868 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46819 * 180.02562 * 10 9 7 12 12 O 1.45205 * 109.47191 * 179.97438 * 11 10 9 13 13 C 1.34759 * 117.00452 * 179.97438 * 12 11 10 14 14 O 1.21521 * 119.99311 * 0.02562 * 13 12 11 15 15 C 1.47336 * 120.00273 * 180.02562 * 13 12 11 16 16 C 1.39813 * 120.18009 * 359.72235 * 15 13 12 17 17 C 1.37698 * 119.91043 * 180.27699 * 16 15 13 18 18 C 1.38720 * 120.29727 * 359.97438 * 17 16 15 19 19 Cl 1.73599 * 119.81448 * 180.02562 * 18 17 16 20 20 C 1.38206 * 120.37250 * 359.97438 * 18 17 16 21 21 C 1.38633 * 120.08028 * 0.02562 * 20 18 17 22 22 O 1.35646 * 120.15012 * 180.02562 * 21 20 18 23 23 H 0.97008 * 119.99940 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46909 * 60.00503 * 9 7 2 25 25 H 1.08995 * 109.47635 * 300.00084 * 9 7 2 26 26 H 1.08993 * 109.47023 * 60.00294 * 10 9 7 27 27 H 1.09000 * 109.47289 * 299.99771 * 10 9 7 28 28 H 1.09001 * 109.47225 * 60.00434 * 11 10 9 29 29 H 1.08995 * 109.47368 * 299.99984 * 11 10 9 30 30 H 1.07994 * 120.04597 * 0.25328 * 16 15 13 31 31 H 1.08000 * 119.85211 * 179.97438 * 17 16 15 32 32 H 1.08009 * 119.95776 * 180.02562 * 20 18 17 33 33 H 0.96691 * 113.99972 * 269.98177 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0009 12 8 6.0356 -4.0054 -0.0002 13 6 7.3716 -4.1820 -0.0006 14 8 8.1117 -3.2183 -0.0011 15 6 7.9347 -5.5435 -0.0005 16 6 7.0866 -6.6550 0.0059 17 6 7.6189 -7.9249 0.0118 18 6 8.9941 -8.1073 0.0108 19 17 9.6517 -9.7139 0.0176 20 6 9.8435 -7.0171 0.0035 21 6 9.3244 -5.7317 -0.0025 22 8 10.1568 -4.6608 -0.0102 23 1 -0.4850 0.8401 0.0004 24 1 3.8751 -0.6804 0.8889 25 1 3.8745 -0.6799 -0.8910 26 1 3.6579 -3.1505 -0.8907 27 1 3.6585 -3.1501 0.8893 28 1 5.9148 -2.1226 0.8891 29 1 5.9149 -2.1227 -0.8909 30 1 6.0154 -6.5177 0.0066 31 1 6.9628 -8.7828 0.0171 32 1 10.9132 -7.1669 0.0023 33 1 10.3999 -4.3452 0.8708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912957728.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:23 Heat of formation + Delta-G solvation = -121.280465 kcal Electronic energy + Delta-G solvation = -18862.581951 eV Core-core repulsion = 15493.261277 eV Total energy + Delta-G solvation = -3369.320674 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.87607 -39.44143 -37.61757 -36.59712 -36.37671 -34.10695 -32.06632 -31.51821 -30.41020 -27.66529 -24.74628 -23.37754 -22.75653 -21.09690 -20.29267 -18.88671 -17.95882 -17.17038 -16.69953 -16.48552 -16.18624 -15.96834 -15.20197 -14.56356 -14.24857 -14.15888 -13.66787 -13.52652 -12.94796 -12.77962 -12.56120 -12.43096 -11.93775 -11.74291 -11.47843 -11.29185 -11.08356 -10.99681 -10.54795 -10.46876 -10.03049 -9.84110 -9.75100 -9.47775 -9.27332 -9.19661 -8.58724 -6.08985 -4.08207 0.09178 0.66498 1.50864 2.27703 2.65247 3.15395 3.28630 3.36330 3.39445 3.69453 4.24527 4.41239 4.45608 4.56940 4.77761 4.93004 5.24307 5.32239 5.41995 5.44107 5.49709 5.62314 5.68101 5.83427 6.02646 6.28604 6.35336 6.60345 6.75792 7.18050 7.22132 7.29598 7.69409 7.79102 8.47405 8.95074 9.52494 11.04122 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.037266 B = 0.002768 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.174071 B =10111.551030 C =10834.456080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.068 3.932 12 O -0.353 6.353 13 C 0.502 3.498 14 O -0.492 6.492 15 C -0.148 4.148 16 C -0.032 4.032 17 C -0.134 4.134 18 C 0.010 3.990 19 Cl -0.057 7.057 20 C -0.154 4.154 21 C 0.186 3.814 22 O -0.473 6.473 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.157 0.843 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.902 -17.850 1.749 27.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.005 4.005 12 O -0.269 6.269 13 C 0.346 3.654 14 O -0.381 6.381 15 C -0.150 4.150 16 C -0.050 4.050 17 C -0.153 4.153 18 C -0.017 4.017 19 Cl -0.028 7.028 20 C -0.174 4.174 21 C 0.140 3.860 22 O -0.285 6.285 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.175 0.825 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 20.954 -17.586 1.155 27.380 hybrid contribution 0.506 0.989 0.435 1.193 sum 21.460 -16.597 1.590 27.175 Atomic orbital electron populations 1.69908 1.06288 1.27001 1.50794 1.25016 0.94760 0.99191 0.94443 0.86783 0.80367 0.83569 0.78621 1.20191 1.21277 1.18971 1.21045 0.89015 0.94669 1.51274 0.90788 1.19520 0.97549 0.91024 0.96708 1.21569 0.88606 1.00869 1.02860 1.23536 0.97065 0.77668 1.02242 1.86537 1.22374 1.34580 1.83455 1.20747 0.81670 0.89036 0.73962 1.90868 1.60478 1.42007 1.44725 1.19813 0.93245 0.91978 1.09958 1.21486 1.01205 0.90139 0.92168 1.21106 0.92975 0.98419 1.02786 1.21033 0.93534 0.86394 1.00702 1.98403 1.86110 1.21785 1.96490 1.21250 1.01166 0.90054 1.04881 1.18242 0.87013 0.86708 0.94064 1.84764 1.64811 1.44965 1.33933 0.92624 0.96270 0.96679 0.91473 0.91468 0.91406 0.91367 0.82549 0.83601 0.83367 0.73995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.53 27.47 -169.99 -4.67 16.87 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.68 9.66 -34.44 -0.33 -15.02 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.10 -1.96 5.53 -26.73 -0.15 -2.11 16 11 C 0.07 1.15 5.48 37.16 0.20 1.35 16 12 O -0.35 -5.46 9.47 -40.65 -0.38 -5.85 16 13 C 0.50 7.40 7.89 34.43 0.27 7.67 16 14 O -0.49 -8.33 14.95 -26.61 -0.40 -8.73 16 15 C -0.15 -1.70 5.89 -104.86 -0.62 -2.32 16 16 C -0.03 -0.29 9.61 -39.19 -0.38 -0.67 16 17 C -0.13 -1.03 9.80 -39.60 -0.39 -1.42 16 18 C 0.01 0.08 6.32 -39.42 -0.25 -0.17 16 19 Cl -0.06 -0.41 28.94 -51.86 -1.50 -1.91 16 20 C -0.15 -1.27 9.75 -39.45 -0.38 -1.65 16 21 C 0.19 1.91 6.72 -38.69 -0.26 1.65 16 22 O -0.47 -4.95 11.57 -40.53 -0.47 -5.41 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 24 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 25 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.16 1.32 7.61 -52.49 -0.40 0.92 16 31 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.40 2.54 9.06 45.56 0.41 2.95 16 LS Contribution 309.68 15.07 4.67 4.67 Total: -1.00 -32.69 309.68 -7.35 -40.03 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -2.88 Total: -1.68 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -2.49 Total: -11.19 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.77 Total: -26.80 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -1.25 Total: -19.99 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.50 Total: -1.91 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.69 -7.35 -40.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912957728.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.246 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds