Wall clock time and date at job start Tue Mar 31 2020 05:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 119.99982 * 2 1 4 4 H 1.48495 * 109.46947 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.46956 * 299.99908 * 3 2 1 6 6 H 1.48501 * 109.47051 * 59.99727 * 3 2 1 7 7 C 1.37874 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00059 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99901 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47198 * 179.97438 * 9 7 2 11 11 O 1.45197 * 109.47012 * 180.02562 * 10 9 7 12 12 C 1.34226 * 116.99751 * 180.02562 * 11 10 9 13 13 O 1.20835 * 120.00113 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00423 * 180.02562 * 12 11 10 15 15 O 1.42893 * 109.47853 * 180.02562 * 14 12 11 16 16 C 1.35916 * 117.00323 * 179.97438 * 15 14 12 17 17 C 1.38728 * 120.04362 * 0.27384 * 16 15 14 18 18 C 1.38137 * 119.95782 * 180.23553 * 17 16 15 19 19 C 1.38365 * 120.04335 * 359.48598 * 18 17 16 20 20 Cl 1.73604 * 119.96019 * 180.27880 * 19 18 17 21 21 C 1.38371 * 120.08418 * 0.25849 * 19 18 17 22 22 C 1.38143 * 120.04298 * 0.02562 * 21 19 18 23 23 H 0.97003 * 120.00485 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46715 * 60.00336 * 9 7 2 25 25 H 1.08996 * 109.47648 * 299.99877 * 9 7 2 26 26 H 1.08995 * 109.46581 * 60.00066 * 10 9 7 27 27 H 1.09002 * 109.47015 * 300.00931 * 10 9 7 28 28 H 1.08998 * 109.47224 * 59.99293 * 14 12 11 29 29 H 1.09008 * 109.46441 * 299.99794 * 14 12 11 30 30 H 1.07998 * 120.01718 * 359.97438 * 17 16 15 31 31 H 1.08002 * 119.98114 * 179.77139 * 18 17 16 32 32 H 1.08001 * 119.97793 * 180.02562 * 21 19 18 33 33 H 1.07998 * 120.01925 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5193 -4.9195 -0.0001 12 6 2.2504 -6.0452 0.0004 13 8 3.4571 -5.9819 0.0008 14 6 1.5663 -7.3880 -0.0008 15 8 2.5504 -8.4241 0.0006 16 6 2.0974 -9.7055 0.0003 17 6 0.7337 -9.9601 -0.0070 18 6 0.2752 -11.2632 -0.0023 19 6 1.1752 -12.3142 -0.0012 20 17 0.5966 -13.9509 -0.0026 21 6 2.5357 -12.0623 0.0008 22 6 2.9981 -10.7605 0.0020 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8898 25 1 0.6240 -2.5568 0.8902 26 1 2.8719 -3.6043 0.8905 27 1 2.8720 -3.6042 -0.8894 28 1 0.9445 -7.4783 -0.8914 29 1 0.9426 -7.4787 0.8886 30 1 0.0310 -9.1400 -0.0120 31 1 -0.7864 -11.4618 -0.0043 32 1 3.2367 -12.8840 0.0013 33 1 4.0602 -10.5644 0.0031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916618412.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:11 Heat of formation + Delta-G solvation = -112.887173 kcal Electronic energy + Delta-G solvation = -18456.197139 eV Core-core repulsion = 15087.240426 eV Total energy + Delta-G solvation = -3368.956713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.78331 -39.85478 -38.02971 -36.56901 -36.10136 -33.42892 -31.69035 -30.80095 -30.19025 -28.57500 -25.07019 -23.43709 -22.69697 -21.29410 -20.63296 -18.86516 -17.43590 -17.01342 -16.90705 -16.59580 -16.08071 -15.53007 -15.51427 -14.89148 -14.53904 -13.96033 -13.83957 -13.61718 -13.25388 -12.69483 -12.55388 -12.41827 -12.17015 -11.70155 -11.33229 -11.15536 -11.10464 -11.05441 -10.84354 -10.74174 -10.31438 -9.76492 -9.71432 -9.54077 -9.34979 -8.52838 -8.50331 -6.16035 -4.20681 0.79465 0.83406 1.80532 2.15243 2.32872 3.20953 3.24339 3.31714 3.35941 3.48615 4.28381 4.34668 4.39397 4.60845 4.77063 4.78344 4.90753 4.97463 5.10945 5.20896 5.49213 5.55730 5.81016 5.84346 5.96609 5.99038 6.12920 6.53168 6.79512 6.88637 7.47898 7.53782 7.79517 8.01913 8.16920 8.84970 9.44238 10.95431 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.063004 B = 0.002212 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.309668 B =12653.076486 C =13071.636928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.024 3.976 10 C 0.077 3.923 11 O -0.352 6.352 12 C 0.458 3.542 13 O -0.494 6.494 14 C 0.065 3.935 15 O -0.289 6.289 16 C 0.140 3.860 17 C -0.199 4.199 18 C -0.067 4.067 19 C -0.075 4.075 20 Cl -0.074 7.074 21 C -0.070 4.070 22 C -0.136 4.136 23 H 0.263 0.737 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.000 -25.222 -0.008 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.079 0.921 9 C -0.013 4.013 10 C 0.004 3.996 11 O -0.269 6.269 12 C 0.298 3.702 13 O -0.382 6.382 14 C -0.011 4.011 15 O -0.202 6.202 16 C 0.094 3.906 17 C -0.218 4.218 18 C -0.086 4.086 19 C -0.102 4.102 20 Cl -0.045 7.045 21 C -0.088 4.088 22 C -0.155 4.155 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.160 0.840 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.362 -25.085 -0.008 25.088 hybrid contribution 0.207 0.877 0.001 0.901 sum 0.569 -24.208 -0.008 24.215 Atomic orbital electron populations 1.69974 1.06103 1.26980 1.49725 1.24986 0.94939 0.99454 0.94792 0.86400 0.80059 0.83043 0.77736 1.19559 1.20796 1.20799 1.21002 0.93258 0.89989 1.52275 0.92122 1.19201 0.94188 0.88897 0.99004 1.23766 0.96508 0.77958 1.01324 1.86483 1.42239 1.15447 1.82743 1.22662 0.86549 0.86724 0.74224 1.90690 1.15422 1.87980 1.44088 1.22009 0.90241 0.83369 1.05501 1.86124 1.34186 1.11738 1.88168 1.19104 0.92467 0.83874 0.95141 1.21315 0.94435 0.97955 1.08066 1.20853 0.99899 0.90657 0.97178 1.20806 0.93957 0.85797 1.09649 1.98367 1.89080 1.19882 1.97202 1.20869 0.93639 0.96598 0.97731 1.20424 1.00268 0.89593 1.05197 0.92698 0.95237 0.95228 0.91975 0.91980 0.87469 0.87478 0.84025 0.84458 0.84153 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.28 55.43 0.74 -25.15 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.61 5.35 -27.88 -0.15 0.46 16 10 C 0.08 1.64 5.40 37.16 0.20 1.84 16 11 O -0.35 -6.58 10.22 -39.25 -0.40 -6.98 16 12 C 0.46 7.56 8.03 36.01 0.29 7.85 16 13 O -0.49 -9.81 16.25 -25.48 -0.41 -10.22 16 14 C 0.06 0.73 5.33 36.01 0.19 0.93 16 15 O -0.29 -3.65 9.67 -39.43 -0.38 -4.03 16 16 C 0.14 1.44 6.69 -39.22 -0.26 1.18 16 17 C -0.20 -1.68 9.04 -39.44 -0.36 -2.04 16 18 C -0.07 -0.53 9.82 -39.57 -0.39 -0.92 16 19 C -0.08 -0.63 6.32 -39.49 -0.25 -0.88 16 20 Cl -0.07 -0.59 28.95 -51.86 -1.50 -2.09 16 21 C -0.07 -0.56 9.82 -39.57 -0.39 -0.95 16 22 C -0.14 -1.25 9.99 -39.44 -0.39 -1.64 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 27 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 28 H 0.11 0.93 7.65 -51.93 -0.40 0.53 16 29 H 0.11 0.93 7.67 -51.92 -0.40 0.53 16 30 H 0.14 0.92 6.30 -52.49 -0.33 0.59 16 31 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 314.00 15.07 4.73 4.73 Total: -1.00 -31.57 314.00 -7.79 -39.37 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: -3.63 Total: -4.28 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.92 Total: -7.42 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.74 Total: -25.15 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -1.20 Total: -21.23 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.57 -7.79 -39.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916618412.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.520 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds