Wall clock time and date at job start Tue Mar 31 2020 05:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00173 * 2 1 4 4 H 1.48501 * 109.47122 * 270.00117 * 3 2 1 5 5 H 1.48499 * 109.47073 * 29.99970 * 3 2 1 6 6 H 1.48501 * 109.47018 * 149.99872 * 3 2 1 7 7 C 1.38802 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99887 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00185 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00114 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47287 * 179.97438 * 10 9 7 12 12 O 1.20831 * 119.99698 * 0.02562 * 11 10 9 13 13 O 1.34228 * 120.00353 * 180.02562 * 11 10 9 14 14 C 1.45195 * 117.00066 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47134 * 179.97438 * 14 13 11 16 16 N 1.29946 * 126.28876 * 270.02842 * 15 14 13 17 17 O 1.21297 * 110.25321 * 179.68528 * 16 15 14 18 18 C 1.33646 * 109.80764 * 0.46050 * 17 16 15 19 19 C 1.50706 * 126.54918 * 179.80385 * 18 17 16 20 20 C 1.53002 * 117.49668 * 59.69212 * 19 18 17 21 21 C 1.53000 * 60.02940 * 252.51929 * 20 19 18 22 22 N 1.31125 * 106.90001 * 359.54417 * 18 17 16 23 23 H 0.96995 * 120.00112 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46868 * 60.00679 * 10 9 7 25 25 H 1.08992 * 109.47249 * 300.00465 * 10 9 7 26 26 H 1.09002 * 109.47492 * 59.99968 * 14 13 11 27 27 H 1.09003 * 109.47103 * 299.99580 * 14 13 11 28 28 H 1.09000 * 115.55924 * 205.37617 * 19 18 17 29 29 H 1.09002 * 117.49918 * 145.01964 * 20 19 18 30 30 H 1.09002 * 117.49754 * 0.02562 * 20 19 18 31 31 H 1.09008 * 117.49673 * 107.47884 * 21 20 19 32 32 H 1.08999 * 117.49942 * 252.47315 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7722 -1.2021 -0.0001 10 6 4.0865 -2.9846 0.0017 11 6 5.5730 -3.2326 0.0008 12 8 6.3411 -2.2999 -0.0005 13 8 6.0437 -4.4897 0.0014 14 6 7.4864 -4.6533 0.0010 15 6 7.8255 -6.1217 0.0024 16 7 7.9984 -6.8701 1.0505 17 8 8.2546 -8.0077 0.7166 18 6 8.2797 -8.0935 -0.6169 19 6 8.5643 -9.3290 -1.4316 20 6 7.6349 -10.5296 -1.2421 21 6 9.0590 -10.5698 -0.6842 22 7 8.0040 -6.8985 -1.0810 23 1 -0.4850 0.8400 -0.0004 24 1 3.6433 -3.4326 -0.8877 25 1 3.6439 -3.4307 0.8923 26 1 7.9057 -4.1832 0.8906 27 1 7.9051 -4.1843 -0.8895 28 1 8.9605 -9.1521 -2.4315 29 1 7.4198 -11.1426 -2.1173 30 1 6.8175 -10.4256 -0.5285 31 1 9.1786 -10.4920 0.3965 32 1 9.7807 -11.2096 -1.1921 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920519880.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:27 Heat of formation + Delta-G solvation = 14.892648 kcal Electronic energy + Delta-G solvation = -18603.731451 eV Core-core repulsion = 15274.652144 eV Total energy + Delta-G solvation = -3329.079307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.00451 -40.29532 -38.03116 -36.85548 -35.86249 -32.71347 -32.51071 -30.31068 -28.20542 -25.69915 -25.46124 -23.81877 -23.01251 -21.49614 -20.92396 -18.54340 -18.07546 -17.91162 -17.30717 -16.98730 -16.35305 -16.10780 -15.18494 -15.03478 -14.16042 -14.05016 -13.94614 -13.37650 -12.95089 -12.77618 -12.59447 -12.32656 -12.27606 -12.17643 -11.55971 -11.42947 -11.35387 -11.23129 -11.06605 -10.81248 -10.78081 -10.36722 -10.06428 -9.89911 -9.07259 -8.65110 -7.05161 -6.35074 -4.09911 0.68510 1.53391 2.30514 2.40811 2.45557 2.91072 3.12364 3.27975 3.32377 3.44146 3.48697 3.65081 4.07370 4.22596 4.26309 4.27590 4.65056 4.67761 4.87340 5.02319 5.03395 5.04057 5.10579 5.24588 5.35191 5.36441 5.45752 5.59218 5.60901 5.91052 6.36314 7.77524 7.86964 7.88916 8.36532 9.09696 10.73943 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.044292 B = 0.002732 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.019351 B =10246.291425 C =10611.916686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.092 0.908 9 S -0.137 6.137 10 C -0.098 4.098 11 C 0.484 3.516 12 O -0.485 6.485 13 O -0.354 6.354 14 C 0.161 3.839 15 C 0.172 3.828 16 N -0.359 5.359 17 O 0.087 5.913 18 C 0.210 3.790 19 C -0.081 4.081 20 C -0.152 4.152 21 C -0.158 4.158 22 N -0.462 5.462 23 H 0.272 0.728 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.152 0.848 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.286 -21.174 -2.064 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.110 0.890 9 S 0.089 5.911 10 C -0.246 4.246 11 C 0.325 3.675 12 O -0.370 6.370 13 O -0.271 6.271 14 C 0.085 3.915 15 C -0.101 4.101 16 N -0.065 5.065 17 O 0.024 5.976 18 C -0.010 4.010 19 C -0.101 4.101 20 C -0.190 4.190 21 C -0.196 4.196 22 N -0.195 5.195 23 H 0.082 0.918 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.169 0.831 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 18.938 -19.222 -1.553 27.028 hybrid contribution -0.664 -0.303 -0.102 0.737 sum 18.274 -19.525 -1.655 26.793 Atomic orbital electron populations 1.69927 1.05873 1.27909 1.47516 1.24697 0.94474 0.98959 0.93066 0.86745 0.81849 0.83291 0.80008 1.19088 1.19756 1.15946 1.22254 0.87597 0.97807 1.59410 0.89007 1.84804 1.10209 0.98466 1.97576 1.23027 0.89174 1.04815 1.07601 1.23336 0.92154 0.79715 0.72263 1.90686 1.58713 1.43424 1.44147 1.86531 1.23371 1.32124 1.85054 1.20744 0.80154 0.85068 1.05569 1.25231 1.01985 0.99200 0.83636 1.74698 1.17721 0.90597 1.23451 1.85293 1.63348 1.24218 1.24766 1.27706 0.95843 0.95699 0.81759 1.20360 1.08669 0.82117 0.98972 1.23205 0.94273 0.97212 1.04325 1.23209 0.97927 0.97077 1.01362 1.71864 1.18182 1.00528 1.28946 0.91779 0.86944 0.86952 0.88002 0.87545 0.83058 0.86623 0.87712 0.87361 0.86741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.15 13.97 55.49 0.78 -25.37 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.37 27.74 -169.99 -4.72 16.65 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 7 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 8 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 9 S -0.14 -3.39 18.55 -107.50 -1.99 -5.39 16 10 C -0.10 -1.94 6.27 36.01 0.23 -1.71 16 11 C 0.48 8.95 7.98 36.01 0.29 9.24 16 12 O -0.48 -9.96 15.61 -18.75 -0.29 -10.25 16 13 O -0.35 -5.79 10.20 -39.25 -0.40 -6.19 16 14 C 0.16 2.22 6.09 36.01 0.22 2.44 16 15 C 0.17 2.36 7.86 -156.37 -1.23 1.13 16 16 N -0.36 -4.83 12.16 30.90 0.38 -4.46 16 17 O 0.09 0.96 11.08 18.09 0.20 1.16 16 18 C 0.21 2.09 7.97 -13.06 -0.10 1.99 16 19 C -0.08 -0.45 6.33 -91.73 -0.58 -1.04 16 20 C -0.15 -0.60 10.23 -26.73 -0.27 -0.88 16 21 C -0.16 -0.53 10.18 -26.70 -0.27 -0.80 16 22 N -0.46 -5.94 11.55 -9.87 -0.11 -6.06 16 23 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.11 2.07 8.14 -51.91 -0.42 1.65 16 25 H 0.11 2.07 8.14 -51.92 -0.42 1.65 16 26 H 0.10 1.30 8.13 -51.93 -0.42 0.87 16 27 H 0.11 1.35 8.13 -51.93 -0.42 0.93 16 28 H 0.15 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.12 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.11 0.39 8.01 -51.92 -0.42 -0.03 16 32 H 0.11 0.17 8.14 -51.93 -0.42 -0.26 16 LS Contribution 309.73 15.07 4.67 4.67 Total: -1.00 -33.63 309.73 -6.38 -40.02 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -3.37 Total: -3.31 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.51 Total: -1.47 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 1.04 Total: -35.89 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.49 Total: -15.28 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.72 Total: 16.65 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.39 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.63 -6.38 -40.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920519880.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.908 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds