Wall clock time and date at job start Tue Mar 31 2020 05:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99750 * 2 1 4 4 H 1.48509 * 109.46896 * 240.00025 * 3 2 1 5 5 H 1.48496 * 109.47463 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47246 * 120.00312 * 3 2 1 7 7 C 1.37881 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99690 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99939 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46803 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46822 * 180.02562 * 10 9 7 12 12 O 1.45200 * 109.47303 * 179.97438 * 11 10 9 13 13 C 1.34756 * 117.00503 * 179.97438 * 12 11 10 14 14 O 1.21519 * 119.99601 * 0.02562 * 13 12 11 15 15 C 1.47324 * 120.00231 * 180.02562 * 13 12 11 16 16 C 1.40264 * 120.20775 * 270.00256 * 15 13 12 17 17 O 1.35649 * 120.14320 * 0.25393 * 16 15 13 18 18 C 1.38625 * 119.70663 * 179.97438 * 16 15 13 19 19 C 1.38137 * 120.12726 * 359.97438 * 18 16 15 20 20 C 1.38447 * 120.42436 * 0.02562 * 19 18 16 21 21 C 1.37993 * 120.29568 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.06797 * 179.97438 * 21 20 19 23 23 H 0.96995 * 120.00053 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46816 * 59.99679 * 9 7 2 25 25 H 1.09000 * 109.47024 * 299.99871 * 9 7 2 26 26 H 1.08995 * 109.47712 * 60.00017 * 10 9 7 27 27 H 1.09000 * 109.47359 * 299.99829 * 10 9 7 28 28 H 1.09000 * 109.47212 * 60.00202 * 11 10 9 29 29 H 1.08997 * 109.47154 * 299.99515 * 11 10 9 30 30 H 0.96704 * 113.99702 * 269.71678 * 17 16 15 31 31 H 1.08000 * 119.93351 * 179.97438 * 18 16 15 32 32 H 1.07995 * 119.78562 * 180.02562 * 19 18 16 33 33 H 1.07997 * 119.85581 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 8 2.4239 -6.0907 -0.0007 13 6 1.9089 -7.3360 -0.0008 14 8 0.7042 -7.4952 -0.0008 15 6 2.8064 -8.5043 -0.0008 16 6 3.2364 -9.0639 -1.2130 17 8 2.8318 -8.5285 -2.3919 18 6 4.0812 -10.1628 -1.2009 19 6 4.4980 -10.7038 -0.0002 20 6 4.0769 -10.1558 1.1994 21 6 3.2350 -9.0625 1.2078 22 17 2.7101 -8.3804 2.7155 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8721 -3.6043 0.8904 27 1 2.8720 -3.6043 -0.8895 28 1 0.8540 -5.0446 -0.8903 29 1 0.8535 -5.0451 0.8897 30 1 2.0141 -8.9117 -2.7379 31 1 4.4142 -10.5969 -2.1321 32 1 5.1566 -11.5598 0.0028 33 1 4.4080 -10.5864 2.1329 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920734112.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:14 Heat of formation + Delta-G solvation = -122.272991 kcal Electronic energy + Delta-G solvation = -19157.458365 eV Core-core repulsion = 15788.094652 eV Total energy + Delta-G solvation = -3369.363713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82179 -39.40759 -37.54560 -36.49574 -36.40311 -33.96955 -31.98401 -31.41394 -30.34138 -27.16528 -24.81282 -23.15452 -23.05549 -21.07056 -20.32125 -18.95127 -17.95380 -17.00330 -16.90304 -16.27167 -16.10219 -15.70170 -15.08601 -14.85480 -14.46073 -13.83141 -13.60956 -13.48088 -12.97317 -12.42644 -12.18052 -12.06773 -11.90659 -11.73135 -11.44232 -11.24621 -10.93683 -10.72869 -10.62291 -10.46199 -10.37812 -9.69939 -9.50800 -9.38898 -9.15449 -9.14410 -8.36447 -6.01480 -4.04432 0.41836 0.58756 1.64461 2.10006 2.68599 3.00763 3.34288 3.38260 3.41169 3.64771 4.34681 4.44294 4.54469 4.57185 4.74249 4.99829 5.12834 5.34347 5.52214 5.58644 5.61047 5.65541 5.75277 6.01062 6.04088 6.42983 6.56627 6.81083 7.00146 7.14516 7.62101 7.73459 7.78297 7.96843 8.38078 9.01514 9.59623 11.09987 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.026341 B = 0.003305 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.721897 B = 8469.262598 C = 8832.140496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.109 4.109 11 C 0.067 3.933 12 O -0.341 6.341 13 C 0.517 3.483 14 O -0.495 6.495 15 C -0.123 4.123 16 C 0.162 3.838 17 O -0.485 6.485 18 C -0.142 4.142 19 C -0.073 4.073 20 C -0.121 4.121 21 C 0.013 3.987 22 Cl -0.042 7.042 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.401 0.599 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.314 -25.100 -0.080 26.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.146 4.146 11 C -0.005 4.005 12 O -0.257 6.257 13 C 0.359 3.641 14 O -0.383 6.383 15 C -0.126 4.126 16 C 0.116 3.884 17 O -0.297 6.297 18 C -0.161 4.161 19 C -0.091 4.091 20 C -0.140 4.140 21 C -0.015 4.015 22 Cl -0.013 7.013 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.260 0.740 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.220 -24.549 0.108 25.889 hybrid contribution -0.233 0.800 0.056 0.835 sum 7.987 -23.748 0.164 25.056 Atomic orbital electron populations 1.69956 1.06084 1.26862 1.50513 1.25028 0.94881 0.99343 0.95194 0.86600 0.79527 0.82860 0.78685 1.20166 1.21269 1.20169 1.21141 0.93116 0.90675 1.51067 0.92453 1.19048 0.93811 0.90675 0.97694 1.21776 0.99972 0.90787 1.02106 1.23596 0.91250 0.83432 1.02271 1.86667 1.42280 1.14402 1.82352 1.20607 0.86837 0.83949 0.72751 1.90877 1.15502 1.87003 1.44957 1.19514 1.02334 0.97451 0.93303 1.18243 0.94774 0.91665 0.83727 1.84796 1.46664 1.64181 1.34062 1.21491 0.99359 0.95411 0.99820 1.21168 0.97845 0.99159 0.90908 1.21050 0.97699 0.95211 1.00000 1.20784 0.98047 0.96111 0.86520 1.98435 1.89036 1.84101 1.29727 0.92844 0.96201 0.96203 0.92066 0.92029 0.91298 0.91329 0.74047 0.83712 0.83820 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 10 C -0.11 -2.36 5.53 -26.73 -0.15 -2.51 16 11 C 0.07 1.32 5.48 37.16 0.20 1.52 16 12 O -0.34 -6.36 10.23 -40.64 -0.42 -6.77 16 13 C 0.52 8.80 5.98 34.43 0.21 9.00 16 14 O -0.50 -9.34 16.90 -19.28 -0.33 -9.67 16 15 C -0.12 -1.67 5.77 -104.83 -0.60 -2.27 16 16 C 0.16 1.77 6.72 -38.68 -0.26 1.51 16 17 O -0.49 -5.22 12.95 -18.65 -0.24 -5.46 16 18 C -0.14 -1.08 9.97 -39.48 -0.39 -1.47 16 19 C -0.07 -0.46 10.03 -39.54 -0.40 -0.85 16 20 C -0.12 -0.97 9.81 -39.59 -0.39 -1.36 16 21 C 0.01 0.15 6.35 -39.06 -0.25 -0.10 16 22 Cl -0.04 -0.53 28.04 -51.86 -1.45 -1.99 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.40 2.51 9.06 45.56 0.41 2.92 16 31 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 33 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -34.11 315.57 -7.48 -41.59 By element: Atomic # 1 Polarization: -0.20 SS G_CDS: -2.93 Total: -3.14 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -2.58 Total: -9.74 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.40 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.98 Total: -21.89 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.45 Total: -1.99 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.11 -7.48 -41.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920734112.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.685 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds