Wall clock time and date at job start Tue Mar 31 2020 06:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42101 * 110.54472 * 2 1 4 4 O 1.42104 * 110.53919 * 223.25239 * 2 1 3 5 5 C 1.76196 * 104.45254 * 111.63143 * 2 1 3 6 6 C 1.38348 * 119.46515 * 89.99685 * 5 2 1 7 7 C 1.38359 * 119.30816 * 180.02562 * 6 5 2 8 8 C 1.40026 * 118.28180 * 0.02562 * 7 6 5 9 9 C 1.47846 * 120.55315 * 179.97438 * 8 7 6 10 10 O 1.21553 * 120.00154 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99557 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72375 * 11 9 8 13 13 C 1.50703 * 109.47138 * 180.28062 * 12 11 9 14 14 H 1.08001 * 120.00037 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99824 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99572 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00297 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47136 * 89.99858 * 17 15 13 19 19 H 1.48503 * 109.47098 * 209.99924 * 17 15 13 20 20 H 1.48504 * 109.46915 * 329.99778 * 17 15 13 21 21 C 1.39518 * 118.88606 * 0.25191 * 8 7 6 22 22 N 1.31692 * 120.56650 * 359.49733 * 21 8 7 23 23 H 1.09005 * 109.47078 * 308.36918 * 1 2 3 24 24 H 1.08997 * 109.47804 * 68.36934 * 1 2 3 25 25 H 1.09005 * 109.47212 * 188.37293 * 1 2 3 26 26 H 1.07996 * 120.34685 * 0.02593 * 6 5 2 27 27 H 1.07991 * 120.85888 * 179.97438 * 7 6 5 28 28 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 29 29 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 30 30 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 31 31 H 0.97001 * 119.99511 * 179.97438 * 16 15 13 32 32 H 1.08002 * 119.71524 * 179.75203 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9118 5 6 2.2537 -0.6290 1.5860 6 6 2.4235 -1.9916 1.7546 7 6 2.7682 -2.4820 3.0016 8 6 2.9320 -1.5698 4.0512 9 6 3.2995 -2.0390 5.4042 10 8 3.4617 -3.2254 5.6129 11 7 3.4548 -1.1510 6.4062 12 6 3.8130 -1.6165 7.7483 13 6 3.9175 -0.4353 8.6784 14 1 3.7357 0.5624 8.3068 15 6 4.2462 -0.6282 10.0034 16 7 4.3379 0.4028 10.8150 17 14 4.5614 -2.3536 10.6460 18 1 6.0023 -2.6813 10.4984 19 1 4.1820 -2.4248 12.0800 20 1 3.7505 -3.3264 9.8705 21 6 2.7368 -0.2113 3.8001 22 7 2.4138 0.2071 2.5940 23 1 -0.3633 0.6379 0.8058 24 1 -0.3634 0.3788 -0.9552 25 1 -0.3634 -1.0167 0.1496 26 1 2.2883 -2.6655 0.9216 27 1 2.9067 -3.5410 3.1614 28 1 3.3250 -0.2043 6.2398 29 1 3.0455 -2.2993 8.1131 30 1 4.7713 -2.1343 7.7096 31 1 4.5688 0.2670 11.7473 32 1 2.8557 0.5036 4.6009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935695202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:32 Heat of formation + Delta-G solvation = -63.251039 kcal Electronic energy + Delta-G solvation = -19229.032235 eV Core-core repulsion = 15896.564363 eV Total energy + Delta-G solvation = -3332.467872 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73491 -38.76716 -37.43522 -36.26666 -34.68208 -32.88371 -32.72133 -31.85739 -29.94483 -28.21456 -25.17898 -24.05262 -22.23176 -20.55957 -19.61709 -18.52825 -17.91943 -17.14806 -16.61484 -16.46018 -15.80937 -15.25378 -15.08685 -15.06219 -14.56810 -14.11863 -13.90987 -13.61759 -13.60647 -13.29077 -13.04426 -12.49185 -12.41083 -12.38758 -12.29739 -11.69498 -11.33947 -11.16364 -10.88359 -10.28918 -10.25373 -10.04652 -9.80832 -9.63842 -9.54230 -8.90295 -8.42189 -6.30749 -4.34753 -0.41467 0.02599 0.83442 2.36140 2.67476 3.19376 3.26334 3.32987 3.42904 3.50145 3.59982 3.67986 4.13599 4.24213 4.35266 4.43889 4.49744 4.71997 4.75037 4.92906 5.04123 5.13076 5.22173 5.48170 5.74729 6.06192 6.61095 6.89243 6.90064 7.20145 7.22143 7.89802 8.28539 8.48536 8.68149 9.27400 10.80897 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.039892 B = 0.003314 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.734248 B = 8446.924790 C = 8928.821169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.511 3.489 3 O -0.913 6.913 4 O -0.931 6.931 5 C -0.424 4.424 6 C -0.095 4.095 7 C -0.038 4.038 8 C -0.119 4.119 9 C 0.540 3.460 10 O -0.542 6.542 11 N -0.690 5.690 12 C 0.219 3.781 13 C -0.549 4.549 14 H 0.081 0.919 15 C 0.080 3.920 16 N -0.888 5.888 17 Si 0.877 3.123 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.261 1.261 21 C 0.113 3.887 22 N -0.394 5.394 23 H 0.137 0.863 24 H 0.136 0.864 25 H 0.132 0.868 26 H 0.160 0.840 27 H 0.159 0.841 28 H 0.398 0.602 29 H 0.031 0.969 30 H 0.026 0.974 31 H 0.269 0.731 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 -2.427 -20.873 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.686 3.314 3 O -0.910 6.910 4 O -0.928 6.928 5 C -0.643 4.643 6 C -0.116 4.116 7 C -0.065 4.065 8 C -0.124 4.124 9 C 0.323 3.677 10 O -0.422 6.422 11 N -0.338 5.338 12 C 0.097 3.903 13 C -0.587 4.587 14 H 0.099 0.901 15 C -0.125 4.125 16 N -0.525 5.525 17 Si 0.703 3.297 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.185 1.185 21 C -0.049 4.049 22 N -0.103 5.103 23 H 0.155 0.845 24 H 0.154 0.846 25 H 0.151 0.849 26 H 0.178 0.822 27 H 0.176 0.824 28 H 0.233 0.767 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.403 -2.061 -21.241 22.936 hybrid contribution -0.125 -1.544 1.442 2.116 sum -8.528 -3.605 -19.799 21.857 Atomic orbital electron populations 1.30173 1.24838 1.12269 1.12336 1.05346 0.78205 0.74775 0.73058 1.93615 1.76917 1.35584 1.84906 1.93619 1.77789 1.62289 1.59103 1.33386 1.11531 0.99416 1.19942 1.21992 0.95792 0.95036 0.98774 1.21892 0.92207 1.01520 0.90887 1.21651 0.99016 0.95546 0.96202 1.18023 0.79188 0.86601 0.83860 1.90762 1.51890 1.16098 1.83426 1.46210 1.66958 1.09853 1.10744 1.19630 0.95901 0.96818 0.77905 1.21039 1.50456 0.93383 0.93839 0.90056 1.24786 0.93980 0.97311 0.96399 1.69876 1.46880 1.30163 1.05558 0.86819 0.79568 0.84713 0.78594 1.19749 1.20763 1.18531 1.23396 0.93437 0.93502 0.94585 1.67791 1.07275 1.36448 0.98815 0.84481 0.84581 0.84919 0.82199 0.82363 0.76651 0.95158 0.95605 0.92095 0.80758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.47 10.79 101.05 1.09 -1.38 16 2 S 2.51 20.94 5.86 -107.50 -0.63 20.31 16 3 O -0.91 -11.32 17.73 -57.54 -1.02 -12.34 16 4 O -0.93 -9.65 17.09 -57.54 -0.98 -10.63 16 5 C -0.42 -4.57 6.53 -17.47 -0.11 -4.68 16 6 C -0.09 -0.94 9.49 -39.50 -0.37 -1.32 16 7 C -0.04 -0.45 9.72 -38.87 -0.38 -0.83 16 8 C -0.12 -1.68 5.89 -104.82 -0.62 -2.30 16 9 C 0.54 9.70 7.78 -12.33 -0.10 9.61 16 10 O -0.54 -11.45 16.42 5.32 0.09 -11.36 16 11 N -0.69 -13.07 5.50 -62.43 -0.34 -13.41 16 12 C 0.22 5.09 4.50 -5.19 -0.02 5.07 16 13 C -0.55 -14.44 9.83 -34.44 -0.34 -14.78 16 14 H 0.08 2.22 7.84 -52.49 -0.41 1.80 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.89 -25.65 13.96 55.43 0.77 -24.88 16 17 Si 0.88 20.66 27.47 -169.99 -4.67 15.99 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 21 C 0.11 1.46 10.71 -17.13 -0.18 1.28 16 22 N -0.39 -5.06 10.02 -12.11 -0.12 -5.18 16 23 H 0.14 0.47 8.14 -51.92 -0.42 0.04 16 24 H 0.14 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 26 H 0.16 1.08 7.55 -52.49 -0.40 0.68 16 27 H 0.16 1.73 7.74 -52.49 -0.41 1.32 16 28 H 0.40 6.50 6.39 -40.82 -0.26 6.24 16 29 H 0.03 0.74 7.20 -51.92 -0.37 0.36 16 30 H 0.03 0.63 7.57 -51.93 -0.39 0.23 16 31 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.18 1.94 6.42 -52.49 -0.34 1.60 16 LS Contribution 298.95 15.07 4.51 4.51 Total: -1.00 -36.54 298.95 -6.55 -43.08 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -3.01 Total: 1.15 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -1.13 Total: -7.24 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.31 Total: -43.47 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.92 Total: -34.33 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Atomic # 16 Polarization: 20.94 SS G_CDS: -0.63 Total: 20.31 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -36.54 -6.55 -43.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935695202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.167 kcal (2) G-P(sol) polarization free energy of solvation -36.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds