Wall clock time and date at job start Tue Mar 31 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99790 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00051 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47121 * 59.99761 * 8 6 4 10 10 H 1.48496 * 109.46967 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46792 * 299.99995 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.50703 * 109.47107 * 293.95458 * 12 2 1 14 14 C 1.38179 * 119.61338 * 94.72496 * 13 12 2 15 15 C 1.38740 * 119.14791 * 179.77412 * 14 13 12 16 16 Br 1.89107 * 120.80140 * 180.24267 * 15 14 13 17 17 C 1.38784 * 118.39844 * 0.48932 * 15 14 13 18 18 C 1.38139 * 119.15028 * 359.75342 * 17 15 14 19 19 N 1.31876 * 119.61059 * 274.99822 * 13 12 2 20 20 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 21 21 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 22 22 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 23 23 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 24 24 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 25 25 H 0.96994 * 119.99598 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 27 27 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 28 28 H 1.07995 * 120.42640 * 359.97438 * 14 13 12 29 29 H 1.08006 * 120.42316 * 179.77227 * 17 15 14 30 30 H 1.08009 * 119.60739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 2.7120 4.0019 0.6148 8 14 1.5829 4.1870 3.1381 9 1 2.1756 3.4298 4.2698 10 1 2.1150 5.5733 3.1380 11 1 0.1057 4.2231 3.2863 12 6 1.9955 -0.7660 -1.1375 13 6 1.6370 -2.2205 -0.9727 14 6 0.4991 -2.7163 -1.5799 15 6 0.1808 -4.0578 -1.4257 16 35 -1.3615 -4.7871 -2.2416 17 6 1.0186 -4.8506 -0.6539 18 6 2.1361 -4.2825 -0.0736 19 7 2.4101 -3.0039 -0.2462 20 1 -0.3632 -1.0253 0.0709 21 1 -0.3633 0.5740 0.8524 22 1 -0.3633 0.4511 -0.9233 23 1 3.0797 1.3445 -0.1083 24 1 1.5611 1.9273 -0.8310 25 1 2.9859 4.9182 0.7765 26 1 1.5612 -0.3873 -2.0628 27 1 3.0798 -0.6612 -1.1755 28 1 -0.1326 -2.0686 -2.1696 29 1 0.7999 -5.8983 -0.5091 30 1 2.7935 -4.8927 0.5281 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140760508.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:30 Heat of formation + Delta-G solvation = 42.855091 kcal Electronic energy + Delta-G solvation = -14416.231938 eV Core-core repulsion = 11871.893781 eV Total energy + Delta-G solvation = -2544.338157 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.28986 -36.57130 -33.45366 -32.75997 -31.47339 -30.08611 -27.48070 -26.91299 -24.19411 -23.43943 -21.73885 -20.22160 -16.85567 -16.54737 -16.31640 -15.42564 -15.07472 -14.47123 -14.01078 -13.68985 -13.48706 -13.21719 -12.63706 -11.96433 -11.86018 -11.59725 -11.46963 -11.08569 -10.90206 -10.71280 -10.55531 -10.47663 -9.91968 -9.45116 -9.41244 -9.24412 -9.05052 -8.43062 -7.30630 -6.02581 -4.03803 0.94927 1.02150 1.28623 3.34618 3.38455 3.41716 3.66587 4.31422 4.44202 4.59628 4.81461 4.98033 5.11093 5.32718 5.36685 5.50536 5.64761 5.80176 5.91160 6.06870 6.15521 6.29107 6.54335 6.70034 7.24308 7.28874 7.77197 8.00526 8.07090 8.14844 8.50619 9.02845 9.60136 11.08348 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.036142 B = 0.003769 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.535981 B = 7427.479940 C = 7711.972693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.530 5.530 3 C 0.194 3.806 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.098 3.902 13 C 0.167 3.833 14 C -0.142 4.142 15 C -0.047 4.047 16 Br -0.043 7.043 17 C -0.160 4.160 18 C 0.110 3.890 19 N -0.453 5.453 20 H 0.042 0.958 21 H 0.077 0.923 22 H 0.014 0.986 23 H 0.033 0.967 24 H -0.007 1.007 25 H 0.262 0.738 26 H 0.043 0.957 27 H 0.092 0.908 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.782 -19.512 -7.071 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.255 5.255 3 C 0.070 3.930 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.031 4.031 13 C 0.027 3.973 14 C -0.164 4.164 15 C -0.135 4.135 16 Br 0.043 6.957 17 C -0.182 4.182 18 C -0.048 4.048 19 N -0.162 5.162 20 H 0.061 0.939 21 H 0.096 0.904 22 H 0.032 0.968 23 H 0.051 0.949 24 H 0.011 0.989 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.110 0.890 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.364 -19.455 -6.590 21.505 hybrid contribution -0.963 0.646 -0.102 1.164 sum -7.328 -18.809 -6.692 21.267 Atomic orbital electron populations 1.22302 0.88885 0.99462 1.00867 1.62104 1.06897 1.17953 1.38514 1.19768 0.95608 0.80801 0.96848 1.21096 1.35007 0.96869 1.01639 0.91908 1.24972 0.95250 0.97293 0.96998 1.69944 1.38272 1.11509 1.34120 0.86547 0.78667 0.78314 0.83807 1.20129 1.21336 1.20299 1.21017 1.01907 0.86508 0.93688 1.21493 0.89227 0.96665 0.89899 1.22037 0.98682 0.93868 1.01822 1.22145 0.94941 0.95809 1.00574 1.96740 1.34392 1.84566 1.80035 1.22080 0.96066 1.01171 0.98856 1.22894 0.94457 0.91305 0.96184 1.67592 1.31013 1.04594 1.12959 0.93949 0.90395 0.96789 0.94879 0.98891 0.92840 0.93862 0.89017 0.84073 0.84148 0.81987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.02 60.07 0.54 1.20 16 2 N -0.53 -11.58 4.74 -245.82 -1.17 -12.74 16 3 C 0.19 5.05 4.72 -4.98 -0.02 5.03 16 4 C -0.51 -14.30 8.46 -34.44 -0.29 -14.59 16 5 H 0.06 1.76 7.12 -52.48 -0.37 1.39 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 7 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.10 1.78 5.29 -4.98 -0.03 1.75 16 13 C 0.17 2.69 5.65 -82.59 -0.47 2.23 16 14 C -0.14 -1.96 8.12 -39.42 -0.32 -2.28 16 15 C -0.05 -0.58 6.27 -39.19 -0.25 -0.82 16 16 Br -0.04 -0.45 33.77 -68.01 -2.30 -2.74 16 17 C -0.16 -1.77 9.90 -39.42 -0.39 -2.16 16 18 C 0.11 1.36 11.18 -17.56 -0.20 1.17 16 19 N -0.45 -7.34 10.27 -9.49 -0.10 -7.44 16 20 H 0.04 0.74 6.39 -51.93 -0.33 0.41 16 21 H 0.08 1.65 6.76 -51.93 -0.35 1.30 16 22 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 23 H 0.03 0.92 7.93 -51.93 -0.41 0.50 16 24 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 26 H 0.04 0.72 8.02 -51.93 -0.42 0.31 16 27 H 0.09 1.71 7.93 -51.93 -0.41 1.29 16 28 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 30 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 279.90 15.07 4.22 4.22 Total: -1.00 -30.44 279.90 -8.69 -39.12 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -3.54 Total: -4.21 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.52 Total: -6.99 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.53 Total: -46.07 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -2.30 Total: -2.74 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.44 -8.69 -39.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140760508.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.978 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds