Wall clock time and date at job start Tue Mar 31 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34808 * 116.99838 * 2 1 4 4 O 1.21558 * 119.99617 * 0.02562 * 3 2 1 5 5 C 1.47107 * 120.00203 * 180.02562 * 3 2 1 6 6 C 1.35288 * 123.15812 * 179.97438 * 5 3 2 7 7 S 1.70939 * 108.82134 * 180.02562 * 6 5 3 8 8 C 1.70767 * 91.13755 * 0.02562 * 7 6 5 9 9 C 1.50698 * 124.70527 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.46938 * 269.99613 * 9 8 7 11 11 C 1.34773 * 120.00054 * 180.02562 * 10 9 8 12 12 O 1.21278 * 120.00263 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99971 * 180.02562 * 11 10 9 14 14 C 1.50707 * 109.47230 * 179.97438 * 13 11 10 15 15 H 1.07997 * 119.99741 * 359.97438 * 14 13 11 16 16 C 1.37877 * 120.00203 * 180.02562 * 14 13 11 17 17 N 1.31520 * 119.99668 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00093 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46995 * 60.00131 * 18 16 14 20 20 H 1.48506 * 109.47172 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47336 * 299.99961 * 18 16 14 22 22 N 1.28617 * 110.58238 * 0.02562 * 8 7 6 23 23 H 1.08994 * 109.46573 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46448 * 299.99738 * 1 2 3 25 25 H 1.09000 * 109.47084 * 59.99818 * 1 2 3 26 26 H 1.07996 * 125.58821 * 0.02562 * 6 5 3 27 27 H 1.09000 * 109.47990 * 29.99537 * 9 8 7 28 28 H 1.09004 * 109.47400 * 150.00406 * 9 8 7 29 29 H 0.96997 * 119.99772 * 359.97438 * 10 9 8 30 30 H 1.09002 * 109.47281 * 299.99684 * 13 11 10 31 31 H 1.09004 * 109.47311 * 59.99814 * 13 11 10 32 32 H 0.97000 * 119.99554 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0640 1.2012 0.0000 4 8 1.4019 2.2206 0.0005 5 6 3.5331 1.2782 -0.0006 6 6 4.2127 2.4480 -0.0011 7 16 5.8887 2.1121 -0.0024 8 6 5.5865 0.4314 -0.0029 9 6 6.6539 -0.6323 -0.0035 10 7 6.9994 -0.9766 -1.3850 11 6 7.9375 -1.9122 -1.6318 12 8 8.4961 -2.4689 -0.7104 13 6 8.2933 -2.2659 -3.0528 14 6 9.3607 -3.3298 -3.0536 15 1 9.7435 -3.7113 -2.1185 16 6 9.8494 -3.8154 -4.2479 17 7 9.3836 -3.3504 -5.3866 18 14 11.1729 -5.1335 -4.2488 19 1 10.6679 -6.3425 -3.5498 20 1 11.5234 -5.4822 -5.6491 21 1 12.3791 -4.6243 -3.5482 22 7 4.3214 0.1995 -0.0027 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 3.7690 3.4327 -0.0008 27 1 7.5397 -0.2587 0.5102 28 1 6.2832 -1.5195 0.5101 29 1 6.5524 -0.5317 -2.1219 30 1 7.4076 -2.6391 -3.5671 31 1 8.6647 -1.3788 -3.5660 32 1 9.7276 -3.6917 -6.2268 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201104.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:20 Heat of formation + Delta-G solvation = -78.469127 kcal Electronic energy + Delta-G solvation = -18798.852546 eV Core-core repulsion = 15465.724768 eV Total energy + Delta-G solvation = -3333.127777 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.04502 -39.67042 -38.62542 -36.74425 -34.55641 -32.93858 -31.35579 -29.20872 -28.47108 -27.31333 -25.35323 -23.44646 -21.84431 -20.26905 -19.83119 -19.30698 -17.30067 -16.82521 -16.75391 -16.44068 -16.20448 -15.50061 -15.10395 -14.57487 -14.52674 -14.26137 -13.89615 -13.40973 -13.20081 -12.68485 -12.56824 -12.37763 -12.29025 -12.07557 -11.17324 -11.08121 -11.06835 -10.81642 -10.60982 -10.15814 -10.08288 -9.97352 -9.48690 -9.30279 -8.71485 -8.65731 -8.42614 -6.06446 -4.06335 0.02257 0.80538 1.18166 1.35222 2.46471 2.76503 3.37580 3.39840 3.44716 3.54505 3.63303 3.94085 4.41329 4.48874 4.70742 4.78371 4.82840 4.90647 5.17371 5.27305 5.31995 5.54703 5.65276 5.96157 6.24639 6.81584 7.00322 7.15326 7.30421 7.46090 7.92466 7.98402 8.35720 9.03883 9.12106 9.58690 11.05858 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.025798 B = 0.003157 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.107556 B = 8865.885469 C = 9397.321269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.334 6.334 3 C 0.550 3.450 4 O -0.503 6.503 5 C 0.020 3.980 6 C -0.223 4.223 7 S 0.260 5.740 8 C 0.013 3.987 9 C 0.198 3.802 10 N -0.745 5.745 11 C 0.520 3.480 12 O -0.541 6.541 13 C 0.007 3.993 14 C -0.510 4.510 15 H 0.075 0.925 16 C 0.055 3.945 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.276 1.276 22 N -0.409 5.409 23 H 0.105 0.895 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.194 0.806 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.398 0.602 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.868 13.599 10.416 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.249 6.249 3 C 0.391 3.609 4 O -0.392 6.392 5 C -0.115 4.115 6 C -0.366 4.366 7 S 0.518 5.482 8 C -0.267 4.267 9 C 0.070 3.930 10 N -0.402 5.402 11 C 0.310 3.690 12 O -0.416 6.416 13 C -0.032 4.032 14 C -0.548 4.548 15 H 0.093 0.907 16 C -0.146 4.146 17 N -0.540 5.540 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.201 1.201 22 N -0.124 5.124 23 H 0.124 0.876 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.211 0.789 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.232 0.768 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.941 13.470 10.910 21.632 hybrid contribution -0.963 -0.364 -0.481 1.137 sum -13.904 13.105 10.430 21.768 Atomic orbital electron populations 1.23366 0.75786 1.04171 1.02578 1.86720 1.23413 1.31393 1.83345 1.19830 0.86726 0.81855 0.72458 1.90881 1.65739 1.36108 1.46444 1.19255 0.92568 0.88149 1.11529 1.26783 0.99613 1.04271 1.05921 1.83162 1.00916 1.02385 1.61708 1.27327 0.94976 0.98858 1.05586 1.19673 0.92039 0.93995 0.87253 1.46370 1.43630 1.44212 1.05967 1.22086 0.76295 0.76191 0.94450 1.90552 1.52077 1.51704 1.47306 1.19248 0.98927 0.98910 0.86145 1.21123 1.19998 1.20290 0.93425 0.90659 1.25008 0.97126 0.97086 0.95360 1.69952 1.43335 1.43427 0.97325 0.86471 0.81875 0.81909 0.76684 1.20093 1.21383 1.20107 1.67027 1.02386 1.30894 1.12135 0.87626 0.91757 0.91656 0.78900 0.89373 0.88589 0.76788 0.93262 0.93299 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.57 101.05 1.07 1.35 16 2 O -0.33 -4.11 10.50 -40.79 -0.43 -4.54 16 3 C 0.55 7.06 7.94 34.33 0.27 7.33 16 4 O -0.50 -6.86 16.51 -19.31 -0.32 -7.18 16 5 C 0.02 0.24 6.71 -84.55 -0.57 -0.32 16 6 C -0.22 -2.11 10.62 29.68 0.32 -1.79 16 7 S 0.26 2.21 22.92 -107.50 -2.46 -0.25 16 8 C 0.01 0.15 6.71 -13.63 -0.09 0.06 16 9 C 0.20 2.70 6.24 -5.19 -0.03 2.67 16 10 N -0.74 -12.16 5.55 -61.47 -0.34 -12.50 16 11 C 0.52 11.31 7.82 -10.99 -0.09 11.22 16 12 O -0.54 -13.46 15.46 5.56 0.09 -13.37 16 13 C 0.01 0.17 5.46 -29.03 -0.16 0.02 16 14 C -0.51 -14.56 8.92 -34.44 -0.31 -14.86 16 15 H 0.08 2.23 6.75 -52.49 -0.35 1.87 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 18 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 N -0.41 -5.54 10.60 -8.53 -0.09 -5.63 16 23 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.19 1.41 8.03 -52.49 -0.42 0.99 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 29 H 0.40 5.74 8.46 -40.82 -0.35 5.39 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 310.66 15.07 4.68 4.68 Total: -1.00 -34.27 310.66 -6.06 -40.33 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -3.21 Total: -0.15 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 0.32 Total: 7.13 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.30 Total: -43.56 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.66 Total: -25.09 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.46 Total: -0.25 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.27 -6.06 -40.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201104.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.137 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds