Wall clock time and date at job start Tue Mar 31 2020 05:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31534 * 1 3 3 Si 1.86805 * 120.00157 * 2 1 4 4 H 1.48503 * 109.47009 * 270.00164 * 3 2 1 5 5 H 1.48499 * 109.46895 * 30.00514 * 3 2 1 6 6 H 1.48501 * 109.46943 * 150.00491 * 3 2 1 7 7 C 1.38855 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00375 * 359.97438 * 7 2 1 9 9 N 1.36805 * 119.99719 * 179.97438 * 7 2 1 10 10 C 1.38415 * 119.99974 * 179.97438 * 9 7 2 11 11 C 1.38754 * 121.05165 * 353.79296 * 10 9 7 12 12 C 1.38942 * 119.65198 * 180.02562 * 11 10 9 13 13 Cl 1.73601 * 119.08785 * 180.02562 * 12 11 10 14 14 N 1.31411 * 121.82526 * 0.02562 * 12 11 10 15 15 C 1.33790 * 121.69204 * 0.02562 * 14 12 11 16 16 C 1.40740 * 120.96093 * 179.97438 * 15 14 12 17 17 F 1.35093 * 120.11553 * 0.03452 * 16 15 14 18 18 C 1.36353 * 119.76620 * 180.02562 * 16 15 14 19 19 C 1.39182 * 121.03282 * 0.02562 * 18 16 15 20 20 C 1.36531 * 120.80448 * 0.02562 * 19 18 16 21 21 F 1.35099 * 120.18339 * 179.97438 * 20 19 18 22 22 C 1.40316 * 119.63711 * 359.66958 * 20 19 18 23 23 H 0.97000 * 119.99574 * 359.97438 * 1 2 3 24 24 H 0.97002 * 120.00449 * 359.97438 * 9 7 2 25 25 H 1.08003 * 120.17572 * 0.02562 * 11 10 9 26 26 H 1.08003 * 119.48484 * 180.02562 * 18 16 15 27 27 H 1.07999 * 119.59522 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4969 2.0464 -1.4001 5 1 1.4469 2.6526 0.7001 6 1 3.5470 1.4401 0.6999 7 6 2.0096 -1.2025 -0.0005 8 1 1.4696 -2.1379 -0.0005 9 7 3.3776 -1.2025 -0.0011 10 6 4.0697 -2.4012 -0.0011 11 6 3.4042 -3.6119 0.1280 12 6 4.1280 -4.7979 0.1248 13 17 3.2804 -6.3043 0.2866 14 7 5.4363 -4.8110 0.0028 15 6 6.1417 -3.6813 -0.1245 16 6 7.5428 -3.7131 -0.2536 17 9 8.1970 -4.8951 -0.2512 18 6 8.2375 -2.5468 -0.3814 19 6 7.5830 -1.3186 -0.3860 20 6 6.2251 -1.2494 -0.2618 21 9 5.6026 -0.0504 -0.2673 22 6 5.4789 -2.4310 -0.1349 23 1 -0.4849 0.8401 0.0004 24 1 3.8627 -0.3625 -0.0014 25 1 2.3292 -3.6323 0.2303 26 1 9.3126 -2.5766 -0.4806 27 1 8.1563 -0.4090 -0.4882 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155537460.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:44 Heat of formation + Delta-G solvation = -38.422226 kcal Electronic energy + Delta-G solvation = -19518.470693 eV Core-core repulsion = 15938.115163 eV Total energy + Delta-G solvation = -3580.355530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.04375 -48.31944 -39.98726 -37.03930 -36.47117 -35.35397 -33.13672 -30.71153 -30.08502 -28.54579 -25.53084 -23.63613 -23.01446 -21.25461 -19.26693 -18.48857 -17.48225 -16.99642 -16.68116 -15.75949 -15.71859 -15.29677 -15.01909 -14.63083 -14.25661 -13.86108 -13.68696 -13.58075 -12.97217 -12.75191 -12.72231 -12.38677 -12.10675 -11.67325 -11.29086 -11.16378 -10.75178 -10.71032 -10.45555 -10.41427 -9.66280 -8.94851 -8.63772 -8.33058 -7.19882 -7.18335 -4.35740 0.77677 1.18806 2.30813 2.43774 2.72507 2.73205 2.76293 3.15364 3.48574 4.07041 4.25611 4.38350 4.55376 4.63633 4.86654 5.03864 5.34629 5.36346 5.81612 5.94057 6.15776 6.25626 6.31771 6.51445 6.54696 6.77865 6.92543 7.17747 7.31077 7.84372 8.46372 8.49869 8.53375 9.85532 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.015596 B = 0.007599 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.942833 B = 3683.749726 C = 5465.444287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.052 3.948 3 Si 0.877 3.123 4 H -0.256 1.256 5 H -0.261 1.261 6 H -0.256 1.256 7 C -0.293 4.293 8 H 0.135 0.865 9 N -0.509 5.509 10 C 0.201 3.799 11 C -0.276 4.276 12 C 0.260 3.740 13 Cl -0.058 7.058 14 N -0.577 5.577 15 C 0.206 3.794 16 C 0.074 3.926 17 F -0.130 7.130 18 C -0.103 4.103 19 C -0.185 4.185 20 C 0.121 3.879 21 F -0.137 7.137 22 C -0.169 4.169 23 H 0.292 0.708 24 H 0.395 0.605 25 H 0.141 0.859 26 H 0.139 0.861 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.559 0.414 -0.268 8.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.161 4.161 3 Si 0.700 3.300 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.180 1.180 7 C -0.424 4.424 8 H 0.152 0.848 9 N -0.111 5.111 10 C 0.067 3.933 11 C -0.307 4.307 12 C 0.095 3.905 13 Cl -0.030 7.030 14 N -0.299 5.299 15 C 0.079 3.921 16 C 0.051 3.949 17 F -0.109 7.109 18 C -0.124 4.124 19 C -0.206 4.206 20 C 0.100 3.900 21 F -0.116 7.116 22 C -0.177 4.177 23 H 0.103 0.897 24 H 0.239 0.761 25 H 0.159 0.841 26 H 0.157 0.843 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.335 -0.175 -0.249 8.340 hybrid contribution -0.214 1.812 0.033 1.825 sum 8.121 1.637 -0.215 8.287 Atomic orbital electron populations 1.69649 1.06014 1.30017 1.39028 1.25287 0.95852 0.99467 0.95483 0.86613 0.80558 0.82161 0.80659 1.18018 1.18554 1.18022 1.19938 0.79146 0.97776 1.45515 0.84796 1.42038 1.07516 1.05756 1.55834 1.17158 0.88376 0.87076 1.00705 1.20570 1.01061 0.88696 1.20375 1.21036 0.89281 0.85677 0.94528 1.98341 1.75240 1.33714 1.95707 1.67216 1.06600 1.27581 1.28478 1.17879 0.91757 0.87021 0.95394 1.16851 0.87856 0.81447 1.08714 1.91456 1.80288 1.45013 1.94132 1.20336 1.00396 0.90146 1.01476 1.20122 0.91913 0.98556 1.10009 1.17229 0.90938 0.78809 1.03012 1.91194 1.82064 1.44280 1.94063 1.18053 0.92789 0.92958 1.13920 0.89720 0.76092 0.84139 0.84279 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -19.59 13.96 55.49 0.77 -18.82 15 2 C 0.05 1.20 5.50 -17.45 -0.10 1.10 15 3 Si 0.88 16.94 27.73 -169.99 -4.71 12.23 15 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 5 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 6 H -0.26 -4.81 6.52 56.52 0.37 -4.45 15 7 C -0.29 -6.83 10.04 -15.10 -0.15 -6.99 15 8 H 0.13 3.27 6.03 -52.49 -0.32 2.95 15 9 N -0.51 -11.11 5.12 -9.27 -0.05 -11.16 15 10 C 0.20 4.31 6.65 -83.42 -0.55 3.76 15 11 C -0.28 -5.84 9.09 -39.13 -0.36 -6.20 15 12 C 0.26 5.37 7.26 -17.47 -0.13 5.24 15 13 Cl -0.06 -1.04 29.08 -51.86 -1.51 -2.55 15 14 N -0.58 -12.35 10.16 -8.17 -0.08 -12.44 15 15 C 0.21 4.17 6.61 -84.82 -0.56 3.61 15 16 C 0.07 1.30 7.30 -39.32 -0.29 1.01 15 17 F -0.13 -2.34 17.12 2.25 0.04 -2.30 15 18 C -0.10 -1.47 9.91 -39.91 -0.40 -1.86 15 19 C -0.18 -2.69 9.93 -39.85 -0.40 -3.08 15 20 C 0.12 2.15 7.24 -39.42 -0.29 1.87 15 21 F -0.14 -2.47 13.99 2.25 0.03 -2.44 15 22 C -0.17 -3.40 5.76 -106.59 -0.61 -4.01 15 23 H 0.29 6.37 8.31 -40.82 -0.34 6.03 15 24 H 0.39 8.21 2.45 -40.82 -0.10 8.11 15 25 H 0.14 2.95 6.11 -52.48 -0.32 2.63 15 26 H 0.14 1.50 8.06 -52.48 -0.42 1.08 15 27 H 0.14 1.56 8.06 -52.49 -0.42 1.13 15 LS Contribution 262.21 15.07 3.95 3.95 Total: -1.00 -24.43 262.21 -6.13 -30.56 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -0.75 Total: 8.51 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -3.82 Total: -5.55 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.64 Total: -42.41 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.07 Total: -4.74 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -4.71 Total: 12.23 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.51 Total: -2.55 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -24.43 -6.13 -30.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537460.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.866 kcal (2) G-P(sol) polarization free energy of solvation -24.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds