Wall clock time and date at job start Tue Mar 31 2020 05:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29309 * 1 3 3 Si 1.86796 * 119.99947 * 2 1 4 4 H 1.48501 * 109.47190 * 270.00160 * 3 2 1 5 5 H 1.48500 * 109.47411 * 30.00540 * 3 2 1 6 6 H 1.48506 * 109.47253 * 150.00172 * 3 2 1 7 7 C 1.46822 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99881 * 179.97438 * 7 2 1 9 9 N 1.32871 * 120.00160 * 359.97438 * 7 2 1 10 10 C 1.38906 * 119.99812 * 179.97438 * 9 7 2 11 11 N 1.32991 * 120.52373 * 0.25351 * 10 9 7 12 12 C 1.31695 * 120.74672 * 180.30666 * 11 10 9 13 13 C 1.50700 * 119.06366 * 179.71006 * 12 11 10 14 14 C 1.53004 * 117.49620 * 188.72688 * 13 12 11 15 15 C 1.52997 * 117.49674 * 120.06922 * 13 12 11 16 16 N 1.31827 * 121.86524 * 359.69205 * 12 11 10 17 17 C 1.32536 * 120.97928 * 0.02562 * 16 12 11 18 18 Cl 1.73593 * 120.43053 * 179.97438 * 17 16 12 19 19 C 1.38548 * 119.14114 * 359.97438 * 17 16 12 20 20 N 1.48016 * 120.84512 * 179.97438 * 19 17 16 21 21 O 1.31700 * 119.99488 * 90.00478 * 20 19 17 22 22 O 1.31699 * 120.00229 * 270.00054 * 20 19 17 23 23 H 0.96999 * 119.99693 * 359.97438 * 1 2 3 24 24 H 0.96997 * 119.99780 * 0.02562 * 9 7 2 25 25 H 1.08998 * 115.55708 * 334.39541 * 13 12 11 26 26 H 1.08998 * 117.49627 * 0.02562 * 14 13 12 27 27 H 1.08999 * 117.49551 * 145.02436 * 14 13 12 28 28 H 1.09002 * 117.49939 * 214.97620 * 15 13 12 29 29 H 1.09005 * 117.50072 * 359.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2271 1.6177 0.0000 4 1 2.4745 2.0464 -1.4001 5 1 1.4246 2.6526 0.7001 6 1 3.5247 1.4402 0.7000 7 6 2.0272 -1.2715 -0.0006 8 1 3.1072 -1.2715 -0.0010 9 7 1.3628 -2.4222 -0.0006 10 6 2.0574 -3.6252 -0.0016 11 7 3.3873 -3.6373 0.0024 12 6 4.0503 -4.7751 -0.0047 13 6 5.5569 -4.7446 -0.0064 14 6 6.2902 -6.0703 -0.2205 15 6 6.2785 -5.4165 1.1635 16 7 3.4332 -5.9401 -0.0099 17 6 2.1098 -6.0111 -0.0088 18 17 1.3120 -7.5528 -0.0164 19 6 1.3712 -4.8389 -0.0014 20 7 -0.1085 -4.8742 -0.0004 21 8 -0.7658 -4.8964 1.1406 22 8 -0.7677 -4.8834 -1.1405 23 1 -0.4850 0.8401 0.0004 24 1 0.3929 -2.4222 -0.0006 25 1 6.0085 -3.8461 -0.4270 26 1 5.6827 -6.9644 -0.3605 27 1 7.2243 -6.0438 -0.7816 28 1 7.2049 -4.9602 1.5124 29 1 5.6634 -5.8803 1.9347 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181698.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:28 Heat of formation + Delta-G solvation = 96.082089 kcal Electronic energy + Delta-G solvation = -19729.651091 eV Core-core repulsion = 16298.508373 eV Total energy + Delta-G solvation = -3431.142718 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.046 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45689 -38.12780 -37.13958 -36.75225 -35.89950 -33.65869 -33.43418 -31.99970 -30.69444 -26.49349 -25.61494 -23.53402 -22.65323 -22.11417 -20.73604 -19.38695 -17.91622 -17.57408 -17.53722 -16.78269 -15.82956 -15.30982 -14.85199 -14.53740 -14.47072 -14.02899 -13.69203 -12.65931 -12.61308 -11.96855 -11.86272 -11.56546 -11.45025 -11.28964 -11.22999 -10.98330 -10.86125 -10.78274 -10.33369 -10.26966 -10.03266 -10.02968 -9.86370 -9.15663 -8.59653 -8.47183 -7.68238 -4.39263 0.44653 1.21356 1.77350 1.83116 2.02001 2.69371 2.72121 2.77445 3.36947 3.71463 3.90521 4.13719 4.46201 4.54723 5.03176 5.14308 5.25173 5.34981 5.57053 5.77742 5.81585 5.98083 6.15988 6.31166 6.34231 6.45160 6.53883 7.04438 7.36108 7.50544 7.61956 8.26469 8.42618 8.99964 9.38260 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.007112 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.042000 B = 3936.059714 C = 5740.235829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.040 3.960 3 Si 0.958 3.042 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.251 1.251 7 C -0.292 4.292 8 H 0.142 0.858 9 N -0.420 5.420 10 C 0.288 3.712 11 N -0.530 5.530 12 C 0.405 3.595 13 C -0.088 4.088 14 C -0.155 4.155 15 C -0.158 4.158 16 N -0.604 5.604 17 C 0.328 3.672 18 Cl -0.031 7.031 19 C -0.223 4.223 20 N 0.000 5.000 21 O -0.163 6.163 22 O -0.164 6.164 23 H 0.306 0.694 24 H 0.410 0.590 25 H 0.127 0.873 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.358 -2.669 0.290 7.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.183 4.183 3 Si 0.779 3.221 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.174 1.174 7 C -0.428 4.428 8 H 0.160 0.840 9 N -0.010 5.010 10 C 0.041 3.959 11 N -0.255 5.255 12 C 0.133 3.867 13 C -0.109 4.109 14 C -0.193 4.193 15 C -0.196 4.196 16 N -0.336 5.336 17 C 0.154 3.846 18 Cl -0.003 7.003 19 C -0.325 4.325 20 N 0.493 4.507 21 O -0.366 6.366 22 O -0.366 6.366 23 H 0.119 0.881 24 H 0.246 0.754 25 H 0.144 0.856 26 H 0.128 0.872 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.616 -2.153 0.291 8.886 hybrid contribution -1.851 0.533 -0.015 1.926 sum 6.765 -1.620 0.277 6.962 Atomic orbital electron populations 1.68647 1.08592 1.32948 1.31440 1.27609 0.95395 1.02056 0.93229 0.85400 0.79985 0.76660 0.80064 1.18537 1.19415 1.17399 1.21589 0.95212 0.81089 1.44933 0.84028 1.40187 1.09170 1.03230 1.48434 1.16575 0.87517 0.82281 1.09569 1.67436 1.04461 1.29604 1.24031 1.21346 0.94585 0.81923 0.88864 1.20486 0.86144 0.98577 1.05655 1.22986 1.01155 0.96414 0.98723 1.22937 1.01468 1.03225 0.91991 1.67489 1.04931 1.29143 1.31999 1.20731 0.89780 0.84302 0.89777 1.98405 1.77117 1.28753 1.96016 1.19920 0.75339 0.95646 1.41622 1.50093 1.04610 0.94525 1.01518 1.96213 1.71076 1.53652 1.15682 1.96214 1.70929 1.53673 1.15807 0.88096 0.75353 0.85563 0.87181 0.88670 0.88372 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -17.61 13.09 56.00 0.73 -16.87 15 2 C 0.04 0.84 5.70 -15.14 -0.09 0.76 15 3 Si 0.96 16.01 29.65 -169.99 -5.04 10.97 15 4 H -0.26 -4.31 7.11 56.52 0.40 -3.91 15 5 H -0.27 -4.39 7.11 56.52 0.40 -3.98 15 6 H -0.25 -4.15 7.11 56.52 0.40 -3.75 15 7 C -0.29 -6.75 9.96 -13.63 -0.14 -6.89 15 8 H 0.14 3.23 7.15 -52.49 -0.38 2.86 15 9 N -0.42 -10.17 5.29 -9.73 -0.05 -10.22 15 10 C 0.29 6.91 7.45 -154.50 -1.15 5.76 15 11 N -0.53 -11.92 9.09 -9.93 -0.09 -12.01 15 12 C 0.40 8.13 7.31 -157.25 -1.15 6.98 15 13 C -0.09 -1.36 6.23 -91.77 -0.57 -1.94 15 14 C -0.16 -1.97 10.01 -26.69 -0.27 -2.23 15 15 C -0.16 -2.02 10.24 -26.69 -0.27 -2.29 15 16 N -0.60 -12.35 9.33 -7.91 -0.07 -12.43 15 17 C 0.33 7.07 7.33 -17.13 -0.13 6.94 15 18 Cl -0.03 -0.59 28.72 -51.86 -1.49 -2.08 15 19 C -0.22 -5.22 6.35 -79.39 -0.50 -5.72 15 20 N 0.00 0.01 3.63 34.23 0.12 0.13 15 21 O -0.16 -3.87 19.97 -31.57 -0.63 -4.50 15 22 O -0.16 -3.88 19.97 -31.57 -0.63 -4.51 15 23 H 0.31 6.06 8.26 -40.82 -0.34 5.72 15 24 H 0.41 10.22 7.32 -40.82 -0.30 9.92 15 25 H 0.13 1.79 8.14 -51.93 -0.42 1.37 15 26 H 0.11 1.55 7.54 -51.93 -0.39 1.16 15 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 28 H 0.10 1.01 8.14 -51.93 -0.42 0.59 15 29 H 0.10 1.34 8.14 -51.93 -0.42 0.91 15 LS Contribution 293.47 15.07 4.42 4.42 Total: -1.00 -25.43 293.47 -8.88 -34.31 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -1.89 Total: 11.42 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -4.26 Total: 1.36 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.64 Total: -51.40 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -1.26 Total: -9.01 kcal Atomic # 14 Polarization: 16.01 SS G_CDS: -5.04 Total: 10.97 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.49 Total: -2.08 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -25.43 -8.88 -34.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181698.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.391 kcal (2) G-P(sol) polarization free energy of solvation -25.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds