Wall clock time and date at job start Tue Mar 31 2020 05:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31528 * 1 3 3 Si 1.86810 * 119.99615 * 2 1 4 4 H 1.48504 * 109.46765 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46922 * 299.99593 * 3 2 1 6 6 H 1.48495 * 109.47379 * 60.00094 * 3 2 1 7 7 C 1.38845 * 120.00387 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00313 * 179.97438 * 7 2 1 9 9 N 1.36792 * 119.99928 * 0.02562 * 7 2 1 10 10 C 1.38435 * 120.00156 * 179.97438 * 9 7 2 11 11 C 1.38714 * 121.05050 * 359.72684 * 10 9 7 12 12 C 1.38973 * 119.64709 * 180.02562 * 11 10 9 13 13 Cl 1.73609 * 119.08393 * 180.02562 * 12 11 10 14 14 N 1.31379 * 121.83323 * 0.02562 * 12 11 10 15 15 C 1.33790 * 121.70399 * 359.97438 * 14 12 11 16 16 C 1.40788 * 120.93493 * 180.02562 * 15 14 12 17 17 F 1.35093 * 120.13210 * 359.95941 * 16 15 14 18 18 C 1.36336 * 119.73972 * 179.11292 * 16 15 14 19 19 C 1.39419 * 120.96790 * 0.89429 * 18 16 15 20 20 F 1.35101 * 119.60381 * 179.40848 * 19 18 16 21 21 C 1.36507 * 120.78787 * 359.38789 * 19 18 16 22 22 C 1.40112 * 119.67298 * 0.02562 * 21 19 18 23 23 H 0.97000 * 120.00591 * 0.02562 * 1 2 3 24 24 H 0.97005 * 119.99958 * 359.72141 * 9 7 2 25 25 H 1.08001 * 120.17627 * 0.02562 * 11 10 9 26 26 H 1.08000 * 119.51323 * 180.32598 * 18 16 15 27 27 H 1.08002 * 120.16527 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 3.7093 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8905 2.3966 1.2125 7 6 2.0096 -1.2024 0.0005 8 1 3.0896 -1.2024 0.0001 9 7 1.3257 -2.3871 0.0005 10 6 2.0179 -3.5859 0.0005 11 6 3.4048 -3.6113 -0.0051 12 6 4.0700 -4.8315 -0.0055 13 17 5.8060 -4.8462 -0.0120 14 7 3.4217 -5.9742 -0.0011 15 6 2.0847 -6.0241 0.0045 16 6 1.4065 -7.2578 0.0096 17 9 2.1037 -8.4149 0.0082 18 6 0.0436 -7.2802 0.0336 19 6 -0.6935 -6.0967 0.0345 20 9 -2.0433 -6.1512 0.0464 21 6 -0.0675 -4.8837 0.0239 22 6 1.3324 -4.8257 0.0114 23 1 -0.4851 0.8400 -0.0004 24 1 0.3557 -2.3871 0.0042 25 1 3.9647 -2.6878 -0.0092 26 1 -0.4729 -8.2287 0.0429 27 1 -0.6483 -3.9732 0.0251 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181915.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:45 Heat of formation + Delta-G solvation = -62.400243 kcal Electronic energy + Delta-G solvation = -19104.836823 eV Core-core repulsion = 15523.441529 eV Total energy + Delta-G solvation = -3581.395295 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.87640 -49.82264 -41.60055 -38.26979 -38.00629 -36.79127 -34.69140 -32.09409 -31.25098 -30.02196 -27.28693 -24.86448 -24.66716 -22.60006 -20.62285 -19.88175 -19.15863 -18.51369 -17.44271 -17.01201 -16.73334 -16.63283 -16.37027 -16.22749 -15.83869 -15.35699 -15.29240 -15.24009 -14.91215 -13.85924 -13.83193 -13.58067 -13.21117 -13.08563 -12.65601 -12.63350 -12.33072 -12.12681 -12.07293 -11.72570 -11.20149 -10.43461 -10.16928 -9.67170 -8.87378 -8.66152 -6.02741 -0.60478 -0.27301 0.87957 0.94950 1.42365 1.46192 1.56577 1.72273 2.10017 2.72793 2.77838 2.93947 3.12476 3.30237 3.45921 3.74928 3.95103 4.05406 4.43062 4.52594 4.66339 4.78374 4.89798 5.00291 5.09166 5.26683 5.33894 5.56985 5.82630 6.41072 6.91770 7.01836 7.09770 8.26443 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.006671 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.162534 B = 4196.539628 C = 6199.826192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C -0.003 4.003 3 Si 1.006 2.994 4 H -0.252 1.252 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.318 4.318 8 H 0.124 0.876 9 N -0.492 5.492 10 C 0.203 3.797 11 C -0.301 4.301 12 C 0.255 3.745 13 Cl -0.042 7.042 14 N -0.594 5.594 15 C 0.151 3.849 16 C 0.102 3.898 17 F -0.128 7.128 18 C -0.137 4.137 19 C 0.080 3.920 20 F -0.136 7.136 21 C -0.119 4.119 22 C -0.125 4.125 23 H 0.293 0.707 24 H 0.405 0.595 25 H 0.139 0.861 26 H 0.178 0.822 27 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.494 -4.067 0.038 4.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.210 4.210 3 Si 0.827 3.173 4 H -0.175 1.175 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.448 4.448 8 H 0.142 0.858 9 N -0.087 5.087 10 C 0.068 3.932 11 C -0.333 4.333 12 C 0.087 3.913 13 Cl -0.013 7.013 14 N -0.316 5.316 15 C 0.028 3.972 16 C 0.080 3.920 17 F -0.106 7.106 18 C -0.158 4.158 19 C 0.058 3.942 20 F -0.115 7.115 21 C -0.140 4.140 22 C -0.132 4.132 23 H 0.103 0.897 24 H 0.242 0.758 25 H 0.157 0.843 26 H 0.196 0.804 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.872 -4.405 0.034 4.491 hybrid contribution -0.552 1.333 -0.001 1.443 sum 0.320 -3.072 0.033 3.089 Atomic orbital electron populations 1.69701 1.07707 1.31396 1.42925 1.26466 0.96522 1.03671 0.94295 0.84646 0.78976 0.75279 0.78415 1.17537 1.19684 1.19672 1.20512 0.94645 0.82366 1.47302 0.85849 1.41162 1.09061 1.02727 1.55750 1.17558 0.91553 0.84926 0.99134 1.20543 0.92251 0.97344 1.23168 1.21180 0.86210 0.89423 0.94453 1.98332 1.07861 1.98716 1.96407 1.67160 1.07283 1.28204 1.28939 1.18426 0.89018 0.91591 0.98211 1.16579 0.88797 0.79747 1.06832 1.91469 1.79470 1.45725 1.93942 1.20709 0.91489 1.00047 1.03557 1.16474 0.77007 0.92943 1.07734 1.91491 1.28323 1.97236 1.94424 1.20711 0.93183 0.98020 1.02100 1.17828 0.93346 0.92269 1.09783 0.89701 0.75793 0.84312 0.80438 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -39.68 13.05 21.65 0.28 -39.40 15 2 C 0.00 -0.13 5.50 84.88 0.47 0.34 15 3 Si 1.01 33.61 29.55 68.60 2.03 35.64 15 4 H -0.25 -8.07 7.11 99.48 0.71 -7.37 15 5 H -0.27 -9.01 7.11 99.48 0.71 -8.30 15 6 H -0.27 -9.00 7.11 99.48 0.71 -8.29 15 7 C -0.32 -13.82 9.57 84.06 0.80 -13.02 15 8 H 0.12 5.14 5.75 -2.91 -0.02 5.12 15 9 N -0.49 -21.00 5.35 -183.20 -0.98 -21.98 15 10 C 0.20 8.41 6.66 39.06 0.26 8.67 15 11 C -0.30 -12.25 9.10 22.56 0.21 -12.04 15 12 C 0.26 10.25 7.26 84.94 0.62 10.86 15 13 Cl -0.04 -1.41 29.08 -2.72 -0.08 -1.49 15 14 N -0.59 -25.01 10.16 -179.73 -1.83 -26.83 15 15 C 0.15 6.04 6.61 40.27 0.27 6.30 15 16 C 0.10 3.56 7.31 22.45 0.16 3.72 15 17 F -0.13 -4.47 17.12 44.97 0.77 -3.70 15 18 C -0.14 -3.97 9.89 22.11 0.22 -3.75 15 19 C 0.08 2.46 7.24 22.15 0.16 2.62 15 20 F -0.14 -4.01 17.25 44.97 0.78 -3.23 15 21 C -0.12 -4.12 9.48 22.32 0.21 -3.90 15 22 C -0.13 -4.90 5.75 -21.17 -0.12 -5.02 15 23 H 0.29 12.20 8.31 -92.71 -0.77 11.43 15 24 H 0.41 17.19 6.09 -92.70 -0.56 16.63 15 25 H 0.14 5.44 6.05 -2.91 -0.02 5.42 15 26 H 0.18 3.86 8.06 -2.91 -0.02 3.84 15 27 H 0.14 4.61 6.51 -2.91 -0.02 4.59 15 Total: -1.00 -48.08 268.03 4.93 -43.15 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.71 Total: 23.07 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 3.25 Total: -5.22 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -2.52 Total: -88.21 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 1.55 Total: -6.93 kcal Atomic # 14 Polarization: 33.61 SS G_CDS: 2.03 Total: 35.64 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -48.08 4.93 -43.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181915.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.253 kcal (2) G-P(sol) polarization free energy of solvation -48.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds