Wall clock time and date at job start Tue Mar 31 2020 05:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86802 * 120.00069 * 2 1 4 4 H 1.48504 * 109.47203 * 270.00019 * 3 2 1 5 5 H 1.48503 * 109.47053 * 29.99723 * 3 2 1 6 6 H 1.48501 * 109.47595 * 150.00004 * 3 2 1 7 7 C 1.39948 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00216 * 163.58715 * 7 2 1 9 9 C 1.41017 * 119.99674 * 343.57934 * 7 2 1 10 10 C 1.41005 * 120.71126 * 334.92410 * 9 7 2 11 11 C 1.38007 * 118.28588 * 180.23930 * 10 9 7 12 12 C 1.38685 * 119.62387 * 359.75639 * 11 10 9 13 13 N 1.31967 * 121.44777 * 359.97438 * 12 11 10 14 14 C 1.32269 * 121.86810 * 0.02562 * 13 12 11 15 15 N 1.38090 * 119.90551 * 179.97438 * 14 13 12 16 16 C 1.46495 * 120.00309 * 359.97438 * 15 14 13 17 17 C 1.53001 * 109.47553 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.46916 * 180.02562 * 17 16 15 19 19 Br 1.96607 * 109.46620 * 180.02562 * 18 17 16 20 20 H 0.96998 * 120.00078 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.85243 * 359.97438 * 10 9 7 22 22 H 1.08001 * 120.18677 * 179.72321 * 11 10 9 23 23 H 1.07997 * 119.27302 * 180.02562 * 12 11 10 24 24 H 0.96999 * 120.00174 * 180.02562 * 15 14 13 25 25 H 1.09006 * 109.46847 * 60.00330 * 16 15 14 26 26 H 1.09000 * 109.47269 * 300.00594 * 16 15 14 27 27 H 1.09000 * 109.46857 * 300.00783 * 17 16 15 28 28 H 1.08997 * 109.46871 * 60.00191 * 17 16 15 29 29 H 1.08992 * 109.47577 * 299.99705 * 18 17 16 30 30 H 1.08994 * 109.47106 * 60.00686 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4401 2.6527 0.7000 6 1 3.5403 1.4403 0.7000 7 6 2.0085 -1.2119 -0.0005 8 1 3.0554 -1.2309 -0.2648 9 6 1.3465 -2.4084 0.3442 10 6 0.2027 -2.3869 1.1685 11 6 -0.4027 -3.5877 1.4784 12 6 0.1194 -4.7692 0.9736 13 7 1.1876 -4.7741 0.1986 14 6 1.8134 -3.6576 -0.1351 15 7 2.9283 -3.7100 -0.9483 16 6 3.4166 -5.0008 -1.4397 17 6 4.6534 -4.7794 -2.3128 18 6 5.1629 -6.1275 -2.8264 19 35 6.7526 -5.8431 -3.9478 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1868 -1.4550 1.5510 22 1 -1.2779 -3.6073 2.1110 23 1 -0.3591 -5.7056 1.2193 24 1 3.3885 -2.8921 -1.1936 25 1 2.6374 -5.4833 -2.0298 26 1 3.6777 -5.6364 -0.5936 27 1 4.3917 -4.1439 -3.1589 28 1 5.4327 -4.2967 -1.7232 29 1 5.4244 -6.7633 -1.9807 30 1 4.3834 -6.6098 -3.4163 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163415696.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:50 Heat of formation + Delta-G solvation = 17.260355 kcal Electronic energy + Delta-G solvation = -14412.839181 eV Core-core repulsion = 11867.391153 eV Total energy + Delta-G solvation = -2545.448028 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.51106 -35.86519 -33.97101 -32.99952 -30.41111 -30.09390 -28.26808 -25.51421 -24.54760 -21.94210 -20.94386 -20.52644 -17.26228 -16.47824 -15.57531 -15.48248 -14.90942 -13.96175 -13.63662 -13.42828 -13.09038 -12.80922 -12.35111 -12.24880 -11.80449 -11.46119 -11.36618 -11.02162 -10.98221 -10.89601 -10.55294 -9.95565 -9.91558 -9.77672 -9.31754 -8.97825 -8.10866 -7.91582 -6.82432 -6.52974 -4.25524 1.61910 2.73100 3.05259 3.07299 3.10741 3.22803 3.90860 4.25059 4.68053 4.75232 4.97619 5.18496 5.48411 5.51177 5.73879 5.87681 6.07079 6.33702 6.35195 6.44041 6.75836 6.86516 7.10449 7.16168 7.64055 7.79590 7.98541 8.25673 8.49680 8.63955 8.77180 8.98016 9.76340 10.18888 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.004212 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.364977 B = 6645.611751 C = 7988.323722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.075 0.925 9 C 0.033 3.967 10 C -0.126 4.126 11 C -0.191 4.191 12 C 0.001 3.999 13 N -0.533 5.533 14 C 0.302 3.698 15 N -0.731 5.731 16 C 0.149 3.851 17 C -0.134 4.134 18 C -0.066 4.066 19 Br -0.174 7.174 20 H 0.280 0.720 21 H 0.125 0.875 22 H 0.094 0.906 23 H 0.117 0.883 24 H 0.403 0.597 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.881 -7.277 -5.780 13.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.093 0.907 9 C 0.026 3.974 10 C -0.152 4.152 11 C -0.213 4.213 12 C -0.152 4.152 13 N -0.251 5.251 14 C 0.065 3.935 15 N -0.371 5.371 16 C 0.022 3.978 17 C -0.173 4.173 18 C -0.182 4.182 19 Br -0.094 7.094 20 H 0.091 0.909 21 H 0.142 0.858 22 H 0.113 0.887 23 H 0.135 0.865 24 H 0.240 0.760 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.496 -8.019 -6.483 14.714 hybrid contribution -0.296 1.814 0.446 1.892 sum 10.199 -6.205 -6.037 13.378 Atomic orbital electron populations 1.69808 1.07481 1.29081 1.36037 1.25809 0.94709 1.01043 0.92562 0.86351 0.80583 0.80877 0.79149 1.19584 1.20153 1.18562 1.19126 0.97024 0.90942 1.41736 0.90734 1.17923 0.94600 0.91309 0.93596 1.21344 0.98090 0.96737 0.99024 1.21417 1.01361 0.94384 1.04184 1.21354 0.95710 0.96136 1.02041 1.66543 1.10975 1.29828 1.17704 1.18463 0.90626 0.89736 0.94719 1.43625 1.30835 1.06772 1.55864 1.20822 0.93212 0.87678 0.96086 1.22002 0.98954 0.95404 1.00939 1.24650 0.92666 1.01456 0.99470 1.97366 1.42845 1.97854 1.71325 0.90937 0.85752 0.88739 0.86513 0.76036 0.93103 0.93135 0.90326 0.90403 0.88055 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.24 10.95 55.55 0.61 -19.63 16 2 C 0.08 1.84 5.19 -17.32 -0.09 1.75 16 3 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.52 8.52 -37.89 -0.32 -11.84 16 8 H 0.07 1.76 6.70 -52.49 -0.35 1.41 16 9 C 0.03 0.85 5.60 -106.47 -0.60 0.26 16 10 C -0.13 -3.24 8.79 -38.62 -0.34 -3.58 16 11 C -0.19 -4.50 10.08 -39.50 -0.40 -4.90 16 12 C 0.00 0.03 11.17 -17.33 -0.19 -0.17 16 13 N -0.53 -12.86 9.54 -11.86 -0.11 -12.97 16 14 C 0.30 7.35 7.52 -155.02 -1.17 6.19 16 15 N -0.73 -14.76 5.61 -59.97 -0.34 -15.09 16 16 C 0.15 2.39 5.68 -4.04 -0.02 2.36 16 17 C -0.13 -1.65 5.39 -26.73 -0.14 -1.79 16 18 C -0.07 -0.67 6.61 37.16 0.25 -0.42 16 19 Br -0.17 -1.91 33.93 -68.01 -2.31 -4.22 16 20 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 21 H 0.12 3.29 6.26 -52.49 -0.33 2.96 16 22 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 23 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 24 H 0.40 7.80 6.68 -40.82 -0.27 7.53 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 278.37 15.07 4.19 4.19 Total: -1.00 -27.63 278.37 -9.48 -37.11 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -3.47 Total: 9.60 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -3.03 Total: -12.13 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.16 Total: -47.70 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 35 Polarization: -1.91 SS G_CDS: -2.31 Total: -4.22 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.63 -9.48 -37.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163415696.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.368 kcal (2) G-P(sol) polarization free energy of solvation -27.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds