Wall clock time and date at job start Tue Mar 31 2020 05:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86809 * 119.99736 * 2 1 4 4 H 1.48500 * 109.47140 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47121 * 300.00709 * 3 2 1 6 6 H 1.48499 * 109.46721 * 60.00547 * 3 2 1 7 7 C 1.39932 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00108 * 162.92665 * 7 2 1 9 9 C 1.41423 * 119.99797 * 342.92793 * 7 2 1 10 10 C 1.40806 * 120.62051 * 155.80430 * 9 7 2 11 11 N 1.31460 * 120.55976 * 179.97438 * 10 9 7 12 12 C 1.32017 * 122.06073 * 359.70640 * 11 10 9 13 13 C 1.39296 * 121.20640 * 0.58880 * 12 11 10 14 14 N 1.39722 * 120.35839 * 179.69509 * 13 12 11 15 15 C 1.46500 * 120.00337 * 359.72593 * 14 13 12 16 16 C 1.53004 * 109.46983 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.46886 * 180.02562 * 16 15 14 18 18 Br 1.96602 * 109.46851 * 180.02562 * 17 16 15 19 19 C 1.38685 * 119.27336 * 359.42647 * 13 12 11 20 20 H 0.96997 * 120.00272 * 359.97438 * 1 2 3 21 21 H 1.07995 * 119.71714 * 359.96081 * 10 9 7 22 22 H 1.08002 * 119.39781 * 180.28632 * 12 11 10 23 23 H 0.96998 * 119.99458 * 179.72316 * 14 13 12 24 24 H 1.08997 * 109.46981 * 299.99807 * 15 14 13 25 25 H 1.08996 * 109.47121 * 59.99996 * 15 14 13 26 26 H 1.09000 * 109.46940 * 300.00152 * 16 15 14 27 27 H 1.08996 * 109.46913 * 60.00214 * 16 15 14 28 28 H 1.08997 * 109.46840 * 300.00007 * 17 16 15 29 29 H 1.08996 * 109.47359 * 60.00255 * 17 16 15 30 30 H 1.08004 * 120.93136 * 180.25868 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.7022 1.3466 -0.0006 5 1 1.8833 2.3966 -1.2123 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2118 -0.0005 8 1 3.0523 -1.2323 -0.2752 9 6 1.3476 -2.4098 0.3585 10 6 1.8226 -3.6547 -0.0967 11 7 1.2081 -4.7675 0.2382 12 6 0.1368 -4.7717 1.0097 13 6 -0.4044 -3.5853 1.4995 14 7 -1.5426 -3.6099 2.3095 15 6 -2.1769 -4.8876 2.6431 16 6 -3.3937 -4.6352 3.5357 17 6 -4.0557 -5.9697 3.8846 18 35 -5.6197 -5.6454 5.0310 19 6 0.2021 -2.3800 1.1789 20 1 -0.4850 0.8400 0.0004 21 1 2.6990 -3.6956 -0.7264 22 1 -0.3314 -5.7117 1.2617 23 1 -1.9127 -2.7809 2.6510 24 1 -2.4949 -5.3854 1.7270 25 1 -1.4639 -5.5201 3.1717 26 1 -3.0753 -4.1375 4.4517 27 1 -4.1068 -4.0025 3.0075 28 1 -4.3740 -6.4678 2.9688 29 1 -3.3424 -6.6021 4.4131 30 1 -0.1925 -1.4446 1.5475 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163423092.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:11 Heat of formation + Delta-G solvation = 11.644053 kcal Electronic energy + Delta-G solvation = -14193.952022 eV Core-core repulsion = 11648.260453 eV Total energy + Delta-G solvation = -2545.691569 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.47726 -36.22879 -34.01531 -33.30281 -30.45021 -30.04551 -27.95577 -25.65877 -24.56809 -22.31650 -21.13988 -20.54375 -17.29218 -15.99772 -15.77690 -15.45206 -14.91139 -14.86945 -13.68477 -13.53642 -13.29409 -12.84117 -12.49883 -12.28474 -11.65334 -11.50654 -11.31675 -11.19023 -11.12629 -10.93920 -10.53100 -10.10425 -10.03748 -9.86962 -9.50946 -9.33037 -8.06675 -7.76276 -6.85465 -6.41890 -4.47516 1.48540 2.72536 3.03799 3.09374 3.10824 3.23605 3.87768 4.03199 4.58843 4.64781 4.79841 4.96257 5.28319 5.29768 5.62233 5.74955 6.03017 6.03928 6.12996 6.55115 6.64592 6.88756 7.08475 7.15259 7.55901 7.70394 7.95960 8.18505 8.42595 8.61018 8.75568 8.85675 9.74522 10.10125 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.030327 B = 0.003243 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.046617 B = 8631.499185 C = 9464.579062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.451 4.451 8 H 0.083 0.917 9 C 0.096 3.904 10 C -0.050 4.050 11 N -0.446 5.446 12 C -0.099 4.099 13 C 0.174 3.826 14 N -0.755 5.755 15 C 0.137 3.863 16 C -0.132 4.132 17 C -0.070 4.070 18 Br -0.170 7.170 19 C -0.209 4.209 20 H 0.280 0.720 21 H 0.123 0.877 22 H 0.114 0.886 23 H 0.391 0.609 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.957 -6.467 9.324 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.482 4.482 8 H 0.101 0.899 9 C 0.090 3.910 10 C -0.215 4.215 11 N -0.153 5.153 12 C -0.258 4.258 13 C 0.073 3.927 14 N -0.390 5.390 15 C 0.011 3.989 16 C -0.170 4.170 17 C -0.186 4.186 18 Br -0.089 7.089 19 C -0.240 4.240 20 H 0.091 0.909 21 H 0.141 0.859 22 H 0.132 0.868 23 H 0.225 0.775 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.438 -7.232 9.413 16.484 hybrid contribution 0.053 1.864 0.162 1.872 sum -11.385 -5.368 9.575 15.815 Atomic orbital electron populations 1.69836 1.07674 1.29158 1.34660 1.25949 0.94738 1.01450 0.92086 0.86246 0.81095 0.80764 0.78568 1.18233 1.19934 1.19723 1.19589 0.97986 0.90875 1.39708 0.89922 1.18275 0.91022 0.93407 0.88250 1.22347 1.03592 0.88152 1.07424 1.66820 1.06865 1.31969 1.09674 1.21216 1.00336 0.94430 1.09804 1.18665 0.87008 0.95607 0.91468 1.44270 1.30644 1.06373 1.57695 1.21026 0.92645 0.87911 0.97363 1.21959 0.97922 0.95787 1.01376 1.24652 0.92958 1.01238 0.99742 1.97384 1.44302 1.97301 1.69955 1.21081 1.01834 0.95033 1.06024 0.90905 0.85913 0.86848 0.77526 0.92851 0.92882 0.90268 0.90199 0.87931 0.87944 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.80 10.93 55.55 0.61 -19.19 16 2 C 0.08 1.86 5.18 -17.35 -0.09 1.77 16 3 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.45 -11.72 9.08 -37.74 -0.34 -12.07 16 8 H 0.08 2.05 7.90 -52.48 -0.41 1.63 16 9 C 0.10 2.55 5.59 -106.69 -0.60 1.95 16 10 C -0.05 -1.30 10.97 -16.74 -0.18 -1.48 16 11 N -0.45 -11.29 10.33 -12.37 -0.13 -11.41 16 12 C -0.10 -2.31 10.49 -17.08 -0.18 -2.49 16 13 C 0.17 3.96 6.66 -83.70 -0.56 3.40 16 14 N -0.76 -13.45 5.74 -58.58 -0.34 -13.79 16 15 C 0.14 1.86 4.92 -4.04 -0.02 1.84 16 16 C -0.13 -1.37 5.39 -26.73 -0.14 -1.51 16 17 C -0.07 -0.60 6.61 37.16 0.25 -0.35 16 18 Br -0.17 -1.68 33.93 -68.01 -2.31 -3.98 16 19 C -0.21 -5.33 8.67 -38.40 -0.33 -5.66 16 20 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 21 H 0.12 2.94 8.06 -52.49 -0.42 2.52 16 22 H 0.11 2.35 6.73 -52.49 -0.35 1.99 16 23 H 0.39 6.55 8.49 -40.82 -0.35 6.20 16 24 H 0.05 0.74 7.97 -51.93 -0.41 0.32 16 25 H 0.05 0.72 7.95 -51.93 -0.41 0.30 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.12 3.23 6.22 -52.48 -0.33 2.90 16 LS Contribution 279.58 15.07 4.21 4.21 Total: -1.00 -28.15 279.58 -8.70 -36.85 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -3.52 Total: 8.82 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -2.20 Total: -14.60 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.14 Total: -44.39 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Atomic # 35 Polarization: -1.68 SS G_CDS: -2.31 Total: -3.98 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.15 -8.70 -36.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163423092.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.490 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds