Wall clock time and date at job start Tue Mar 31 2020 05:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76198 * 99.99849 * 2 1 4 4 N 1.32786 * 118.96465 * 359.97438 * 3 2 1 5 5 C 1.32164 * 121.10373 * 179.70468 * 4 3 2 6 6 Cl 1.73609 * 120.47387 * 180.31115 * 5 4 3 7 7 C 1.40165 * 119.04825 * 0.57011 * 5 4 3 8 8 C 1.43204 * 120.93081 * 179.74033 * 7 5 4 9 9 N 7.01973 * 99.80586 * 0.02562 * 2 1 3 10 10 C 1.41187 * 118.14227 * 359.46915 * 7 5 4 11 11 N 1.38033 * 120.59281 * 180.27531 * 10 7 5 12 12 C 1.46503 * 119.99519 * 268.88905 * 11 10 7 13 13 C 1.36906 * 120.00343 * 88.89548 * 11 10 7 14 14 H 1.08007 * 119.99773 * 0.52045 * 13 11 10 15 15 C 1.38881 * 120.00155 * 180.51487 * 13 11 10 16 16 N 1.31501 * 120.00263 * 344.16939 * 15 13 11 17 17 Si 1.86799 * 119.99799 * 164.16237 * 15 13 11 18 18 H 1.48503 * 109.47320 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46864 * 120.00459 * 17 15 13 20 20 H 1.48500 * 109.47293 * 240.00281 * 17 15 13 21 21 N 1.32510 * 118.96601 * 180.02562 * 3 2 1 22 22 H 1.08998 * 109.47207 * 299.99876 * 1 2 3 23 23 H 1.09002 * 109.46871 * 60.00427 * 1 2 3 24 24 H 1.08999 * 109.46719 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47564 * 5.34933 * 12 11 10 26 26 H 1.09004 * 109.46665 * 125.34866 * 12 11 10 27 27 H 1.08998 * 109.47370 * 245.34722 * 12 11 10 28 28 H 0.96997 * 120.00208 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0835 2.5702 -0.0005 5 6 1.2642 3.8794 0.0053 6 17 -0.0976 4.9562 0.0126 7 6 2.5710 4.3861 -0.0001 8 6 2.8133 5.7975 0.0003 9 7 3.0056 6.9172 0.0031 10 6 3.6420 3.4660 0.0000 11 7 4.9491 3.9095 0.0005 12 6 5.6510 4.1219 -1.2678 13 6 5.5897 4.1508 1.1861 14 1 5.0750 3.9860 2.1213 15 6 6.9014 4.6072 1.1864 16 7 7.6300 4.5149 0.0956 17 14 7.6306 5.3524 2.7364 18 1 6.6127 5.3405 3.8176 19 1 8.8112 4.5573 3.1598 20 1 8.0478 6.7513 2.4641 21 7 3.3691 2.1659 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 4.9585 3.9714 -2.0960 26 1 6.0415 5.1391 -1.3010 27 1 6.4752 3.4134 -1.3501 28 1 8.5460 4.8340 0.0957 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166800934.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:40 Heat of formation + Delta-G solvation = 109.633073 kcal Electronic energy + Delta-G solvation = -17435.961111 eV Core-core repulsion = 14448.158878 eV Total energy + Delta-G solvation = -2987.802233 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 284.019 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73736 -37.04167 -36.58789 -35.81292 -33.19969 -32.13720 -30.59603 -28.94815 -26.40329 -25.44157 -24.74139 -21.92541 -19.03399 -18.46698 -18.03843 -17.08198 -15.81259 -15.30570 -15.12794 -14.33717 -13.97626 -13.66394 -13.37980 -13.18306 -12.91702 -12.77799 -12.41404 -12.31983 -12.26642 -11.64650 -11.47315 -11.19683 -11.04604 -10.84735 -10.55265 -10.37938 -10.23120 -10.07669 -9.54828 -9.35301 -8.88267 -7.77926 -7.64681 -6.06468 -3.56354 0.41766 1.07275 1.11284 1.50069 2.17221 3.09008 3.20401 3.24967 3.31942 3.34399 3.85409 3.97877 4.14254 4.36612 4.65313 4.95533 5.09749 5.14227 5.14833 5.47718 5.74152 5.87346 6.36798 6.74690 7.19756 7.39691 7.55580 7.87503 7.95424 8.02371 8.76817 9.41433 9.70113 10.93933 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.006526 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.740091 B = 4289.384555 C = 5354.843472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S 0.016 5.984 3 C 0.335 3.665 4 N -0.540 5.540 5 C 0.277 3.723 6 Cl -0.012 7.012 7 C -0.137 4.137 8 C 0.281 3.719 9 N -0.400 5.400 10 C 0.534 3.466 11 N -0.544 5.544 12 C 0.166 3.834 13 C -0.279 4.279 14 H 0.083 0.917 15 C 0.024 3.976 16 N -0.894 5.894 17 Si 0.918 3.082 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 N -0.507 5.507 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.002 0.998 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.702 -6.462 -1.669 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.250 5.750 3 C -0.041 4.041 4 N -0.262 5.262 5 C 0.098 3.902 6 Cl 0.016 6.984 7 C -0.155 4.155 8 C -0.036 4.036 9 N -0.076 5.076 10 C 0.290 3.710 11 N -0.264 5.264 12 C 0.024 3.976 13 C -0.406 4.406 14 H 0.101 0.899 15 C -0.177 4.177 16 N -0.537 5.537 17 Si 0.746 3.254 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.209 1.209 21 N -0.229 5.229 22 H 0.110 0.890 23 H 0.110 0.890 24 H 0.123 0.877 25 H 0.021 0.979 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.677 -6.588 -1.721 14.390 hybrid contribution -0.433 1.889 0.792 2.093 sum -13.110 -4.699 -0.929 13.958 Atomic orbital electron populations 1.23605 0.94748 1.06184 1.07390 1.86012 1.06060 0.93156 1.89741 1.25148 0.86487 0.99903 0.92597 1.68124 1.35020 1.01893 1.21167 1.22117 0.86649 0.89321 0.92140 1.98433 1.43852 1.60263 1.95809 1.18493 0.93277 0.89116 1.14622 1.24397 0.93680 0.91329 0.94192 1.81098 1.06804 1.11741 1.07971 1.18587 0.88189 0.85413 0.78820 1.41724 1.05671 1.72605 1.06397 1.21318 0.93327 1.02671 0.80299 1.19179 0.96080 1.41854 0.83453 0.89888 1.24882 0.95615 0.99040 0.98155 1.70161 1.08599 1.47686 1.27232 0.85994 0.78927 0.78972 0.81541 1.19891 1.21048 1.20874 1.69325 1.19361 1.18287 1.15898 0.88991 0.89004 0.87733 0.97898 0.92425 0.91541 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.61 101.05 0.97 -0.38 15 2 S 0.02 0.21 22.89 -107.50 -2.46 -2.25 15 3 C 0.34 5.69 7.85 -90.68 -0.71 4.97 15 4 N -0.54 -8.60 9.08 -10.21 -0.09 -8.70 15 5 C 0.28 4.60 7.37 -16.69 -0.12 4.47 15 6 Cl -0.01 -0.17 28.31 -51.86 -1.47 -1.64 15 7 C -0.14 -2.65 5.80 -106.13 -0.62 -3.26 15 8 C 0.28 5.70 14.10 -22.47 -0.32 5.38 15 9 N -0.40 -8.51 18.54 41.84 0.78 -7.73 15 10 C 0.53 11.54 6.00 -154.79 -0.93 10.61 15 11 N -0.54 -13.35 2.48 -121.94 -0.30 -13.65 15 12 C 0.17 3.95 8.96 59.85 0.54 4.49 15 13 C -0.28 -7.37 9.76 -15.05 -0.15 -7.52 15 14 H 0.08 2.18 7.88 -52.48 -0.41 1.77 15 15 C 0.02 0.62 5.32 -17.46 -0.09 0.53 15 16 N -0.89 -24.22 9.74 55.49 0.54 -23.67 15 17 Si 0.92 21.16 29.58 -169.99 -5.03 16.13 15 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 21 N -0.51 -10.36 10.41 -12.37 -0.13 -10.49 15 22 H 0.09 0.85 8.11 -51.92 -0.42 0.43 15 23 H 0.09 0.83 8.11 -51.92 -0.42 0.41 15 24 H 0.10 0.66 8.14 -51.92 -0.42 0.24 15 25 H 0.00 0.05 7.90 -51.93 -0.41 -0.36 15 26 H 0.06 1.46 7.17 -51.93 -0.37 1.09 15 27 H 0.07 1.69 7.01 -51.93 -0.36 1.33 15 28 H 0.26 6.78 8.31 -40.82 -0.34 6.44 15 LS Contribution 289.73 15.07 4.37 4.37 Total: -1.00 -27.91 289.73 -7.19 -35.10 By element: Atomic # 1 Polarization: -4.80 SS G_CDS: -1.96 Total: -6.76 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: -1.43 Total: 19.30 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: 0.79 Total: -64.25 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.46 Total: -2.25 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.47 Total: -1.64 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.91 -7.19 -35.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800934.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.730 kcal (2) G-P(sol) polarization free energy of solvation -27.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds