Wall clock time and date at job start Tue Mar 31 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00189 * 2 1 4 4 H 1.48503 * 109.47164 * 270.00385 * 3 2 1 5 5 H 1.48499 * 109.47374 * 29.99924 * 3 2 1 6 6 H 1.48503 * 109.47302 * 150.00441 * 3 2 1 7 7 C 1.37879 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00083 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99936 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40274 * 66.46275 * 9 7 2 11 11 O 1.42099 * 106.40511 * 293.54484 * 9 7 2 12 12 N 1.65602 * 107.21820 * 180.02562 * 9 7 2 13 13 C 1.38324 * 120.00076 * 65.00320 * 12 9 7 14 14 C 1.36369 * 126.74095 * 134.99701 * 13 12 9 15 15 C 1.42019 * 103.85621 * 180.02562 * 14 13 12 16 16 C 1.47809 * 126.89975 * 180.02562 * 15 14 13 17 17 C 1.35943 * 125.93366 * 179.97438 * 16 15 14 18 18 C 1.40857 * 106.74048 * 180.02562 * 17 16 15 19 19 C 1.34791 * 107.03477 * 0.02562 * 18 17 16 20 20 O 1.34225 * 108.67009 * 0.26857 * 19 18 17 21 21 N 1.31433 * 106.20338 * 0.26064 * 15 14 13 22 22 O 1.20887 * 111.59899 * 359.53711 * 21 15 14 23 23 H 0.96994 * 119.99723 * 359.97438 * 1 2 3 24 24 H 0.96999 * 120.00226 * 244.99837 * 12 9 7 25 25 H 1.07996 * 128.07319 * 0.02631 * 14 13 12 26 26 H 1.07999 * 126.63435 * 0.02562 * 17 16 15 27 27 H 1.08006 * 126.48281 * 180.02562 * 18 17 16 28 28 H 1.08002 * 125.66126 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2501 11 8 0.4518 -2.7955 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 3.0896 -4.0993 1.0852 14 6 3.4063 -5.2736 1.7018 15 6 4.2923 -4.8838 2.7411 16 6 4.9472 -5.7687 3.7274 17 6 5.7935 -5.3738 4.7153 18 6 6.1761 -6.5373 5.4109 19 6 5.5512 -7.5747 4.8191 20 8 4.8148 -7.1073 3.7988 21 7 4.4089 -3.5776 2.6531 22 8 3.7542 -3.1330 1.7392 23 1 -0.4849 0.8400 0.0004 24 1 2.3171 -4.5326 -0.7618 25 1 3.0635 -6.2680 1.4570 26 1 6.1112 -4.3634 4.9260 27 1 6.8439 -6.5886 6.2583 28 1 5.6335 -8.6105 5.1137 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192943476.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:54 Heat of formation + Delta-G solvation = -3.402331 kcal Electronic energy + Delta-G solvation = -19614.154499 eV Core-core repulsion = 16148.448768 eV Total energy + Delta-G solvation = -3465.705731 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.034 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.63649 -42.62000 -35.69509 -35.36817 -34.28821 -34.26156 -33.18211 -33.07058 -29.66009 -29.24905 -26.25615 -23.78430 -22.89414 -21.46775 -20.61689 -19.32548 -18.76201 -17.98760 -17.10857 -16.95870 -16.39862 -16.07256 -15.78991 -15.13600 -14.70302 -14.17795 -13.77751 -13.42204 -13.03860 -12.93036 -12.68238 -12.17242 -11.79825 -11.44620 -11.24154 -11.12634 -10.92646 -10.62720 -10.58915 -10.51790 -10.47721 -10.05309 -9.31602 -9.00184 -8.61018 -8.32449 -6.80397 -5.44007 1.01497 1.64898 1.89745 2.25600 2.52383 2.91511 2.97379 3.05985 3.13951 3.22638 4.02342 4.20599 4.49094 4.56892 4.81619 4.86494 4.91692 5.21416 5.37472 5.47261 5.65788 5.74890 5.86191 5.97474 6.19442 6.30804 6.33184 6.91134 7.22712 7.27828 7.86674 8.35428 8.79774 10.14753 Molecular weight = 284.03amu Principal moments of inertia in cm(-1) A = 0.028690 B = 0.004739 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.702683 B = 5907.169471 C = 6592.876943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.135 3.865 3 Si 0.925 3.075 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.259 1.259 7 C -1.010 5.010 8 H 0.110 0.890 9 S 2.687 3.313 10 O -0.982 6.982 11 O -0.982 6.982 12 N -1.020 6.020 13 C 0.249 3.751 14 C -0.244 4.244 15 C 0.093 3.907 16 C 0.060 3.940 17 C -0.169 4.169 18 C -0.214 4.214 19 C -0.029 4.029 20 O -0.164 6.164 21 N -0.337 5.337 22 O 0.115 5.885 23 H 0.293 0.707 24 H 0.430 0.570 25 H 0.179 0.821 26 H 0.156 0.844 27 H 0.153 0.847 28 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.639 -11.510 5.628 16.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.084 4.084 3 Si 0.749 3.251 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.183 1.183 7 C -1.144 5.144 8 H 0.128 0.872 9 S 2.788 3.212 10 O -0.973 6.973 11 O -0.971 6.971 12 N -0.772 5.772 13 C 0.087 3.913 14 C -0.272 4.272 15 C -0.062 4.062 16 C 0.010 3.990 17 C -0.190 4.190 18 C -0.233 4.233 19 C -0.098 4.098 20 O -0.059 6.059 21 N -0.042 5.042 22 O 0.049 5.951 23 H 0.104 0.896 24 H 0.268 0.732 25 H 0.196 0.804 26 H 0.173 0.827 27 H 0.171 0.829 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 9.959 -10.699 6.226 15.887 hybrid contribution 0.732 0.246 -0.558 0.953 sum 10.691 -10.453 5.668 15.990 Atomic orbital electron populations 1.69877 1.06823 1.31108 1.39535 1.24740 0.94515 1.00942 0.88196 0.86070 0.80346 0.79465 0.79238 1.19115 1.19900 1.18253 1.30308 1.06264 1.10405 1.67470 0.87196 1.01636 0.72331 0.73645 0.73544 1.93429 1.71766 1.86952 1.45122 1.93423 1.71717 1.86707 1.45299 1.53643 1.47764 1.52803 1.22991 1.19940 0.92746 0.87642 0.90981 1.22103 1.06911 0.99842 0.98346 1.19905 1.00009 0.89841 0.96479 1.18576 1.01767 0.80455 0.98227 1.21863 1.00047 1.00655 0.96432 1.21796 1.05482 0.92104 1.03932 1.24182 0.96098 1.00085 0.89463 1.84025 1.56585 1.20548 1.44736 1.74341 1.13306 1.10095 1.06505 1.85042 1.43428 1.33895 1.32779 0.89623 0.73187 0.80369 0.82664 0.82924 0.77503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.03 13.19 55.43 0.73 -23.30 15 2 C 0.13 3.65 5.46 -17.82 -0.10 3.56 15 3 Si 0.93 20.27 29.54 -169.99 -5.02 15.25 15 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 5 H -0.27 -5.78 7.11 56.52 0.40 -5.37 15 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 15 7 C -1.01 -26.80 9.28 30.60 0.28 -26.51 15 8 H 0.11 2.69 7.69 -52.49 -0.40 2.28 15 9 S 2.69 67.95 4.99 -107.50 -0.54 67.41 15 10 O -0.98 -26.79 18.02 -57.17 -1.03 -27.82 15 11 O -0.98 -27.91 17.73 -57.17 -1.01 -28.93 15 12 N -1.02 -19.21 5.84 30.78 0.18 -19.03 15 13 C 0.25 4.69 7.53 -15.29 -0.12 4.58 15 14 C -0.24 -3.98 11.18 -38.81 -0.43 -4.41 15 15 C 0.09 1.59 7.17 -82.68 -0.59 1.00 15 16 C 0.06 0.90 7.21 -36.49 -0.26 0.63 15 17 C -0.17 -2.20 10.83 -39.41 -0.43 -2.62 15 18 C -0.21 -2.14 10.89 -39.81 -0.43 -2.58 15 19 C -0.03 -0.27 12.08 29.51 0.36 0.08 15 20 O -0.16 -2.11 10.67 4.81 0.05 -2.06 15 21 N -0.34 -6.43 12.10 33.32 0.40 -6.02 15 22 O 0.12 2.36 10.67 16.55 0.18 2.53 15 23 H 0.29 7.50 8.31 -40.82 -0.34 7.16 15 24 H 0.43 6.24 8.95 -34.47 -0.31 5.93 15 25 H 0.18 2.30 8.06 -52.49 -0.42 1.87 15 26 H 0.16 1.92 8.06 -52.49 -0.42 1.50 15 27 H 0.15 1.09 8.06 -52.48 -0.42 0.67 15 28 H 0.21 0.98 8.06 -52.49 -0.42 0.55 15 LS Contribution 282.90 15.07 4.26 4.26 Total: -1.00 -34.66 282.90 -5.06 -39.72 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -1.54 Total: 4.26 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -1.72 Total: -26.28 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 1.31 Total: -48.35 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -1.82 Total: -56.27 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 67.95 SS G_CDS: -0.54 Total: 67.41 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.66 -5.06 -39.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192943476.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.319 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds