Wall clock time and date at job start Tue Mar 31 2020 05:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37741 * 119.83938 * 2 1 4 4 C 1.39750 * 119.94461 * 180.02562 * 3 2 1 5 5 C 1.43199 * 120.18183 * 179.97438 * 4 3 2 6 6 N 4.80092 * 134.58090 * 359.97438 * 2 1 3 7 7 C 1.40460 * 119.63458 * 0.02562 * 4 3 2 8 8 N 1.39035 * 120.15854 * 179.97438 * 7 4 3 9 9 S 1.65596 * 120.00381 * 146.64217 * 8 7 4 10 10 O 1.42096 * 106.40399 * 181.29608 * 9 8 7 11 11 O 1.42106 * 106.40139 * 314.21626 * 9 8 7 12 12 C 1.76205 * 107.21657 * 67.75390 * 9 8 7 13 13 H 1.08001 * 120.00139 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99944 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00225 * 180.02562 * 14 12 9 16 16 Si 1.86805 * 120.00051 * 0.02562 * 14 12 9 17 17 H 1.48492 * 109.47184 * 89.99998 * 16 14 12 18 18 H 1.48497 * 109.47250 * 210.00214 * 16 14 12 19 19 H 1.48503 * 109.46916 * 329.99718 * 16 14 12 20 20 C 1.38738 * 119.68615 * 0.02562 * 7 4 3 21 21 C 1.38327 * 120.04812 * 359.95981 * 20 7 4 22 22 F 1.35096 * 119.81753 * 180.02562 * 21 20 7 23 23 H 1.09007 * 109.47455 * 89.99840 * 1 2 3 24 24 H 1.08998 * 109.47182 * 210.00030 * 1 2 3 25 25 H 1.09000 * 109.47467 * 330.00078 * 1 2 3 26 26 H 1.08001 * 120.03201 * 359.74569 * 3 2 1 27 27 H 0.97003 * 119.99527 * 326.64660 * 8 7 4 28 28 H 0.96993 * 120.00001 * 180.02562 * 15 14 12 29 29 H 1.07997 * 119.97437 * 179.97438 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1923 1.1948 0.0000 4 6 3.5898 1.1974 -0.0005 5 6 4.3075 2.4365 -0.0011 6 7 4.8768 3.4195 -0.0015 7 6 4.2866 -0.0222 -0.0016 8 7 5.6769 -0.0324 -0.0027 9 16 6.4968 -1.2366 0.7846 10 8 7.8796 -0.9507 0.6258 11 8 5.8741 -1.3826 2.0536 12 6 6.1942 -2.7340 -0.0934 13 1 5.5672 -2.7271 -0.9727 14 6 6.7587 -3.9143 0.3415 15 7 6.5333 -5.0319 -0.3141 16 14 7.8438 -3.9261 1.8620 17 1 7.0081 -4.1718 3.0646 18 1 8.8596 -5.0020 1.7369 19 1 8.5264 -2.6138 1.9932 20 6 3.5809 -1.2167 -0.0027 21 6 2.1977 -1.2040 -0.0018 22 9 1.5152 -2.3699 -0.0024 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6502 2.1289 -0.0042 27 1 6.1666 0.6660 -0.4647 28 1 6.9301 -5.8622 -0.0079 29 1 4.1119 -2.1571 -0.0040 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192985348.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:05 Heat of formation + Delta-G solvation = -72.149780 kcal Electronic energy + Delta-G solvation = -19967.594349 eV Core-core repulsion = 16511.280294 eV Total energy + Delta-G solvation = -3456.314055 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.042 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.81407 -39.73021 -36.37470 -36.00905 -35.34019 -34.76748 -33.28762 -31.29294 -30.97475 -26.77736 -26.19858 -23.82718 -22.29046 -19.49647 -18.71328 -18.00525 -17.87994 -17.13043 -16.29992 -15.64680 -15.44595 -15.16296 -14.52385 -14.09331 -13.94610 -13.67647 -13.60636 -13.43123 -13.25731 -13.00372 -12.78116 -12.50919 -12.33419 -11.89795 -11.83339 -11.56174 -11.16024 -11.04478 -10.92477 -10.71068 -10.53594 -10.03913 -9.37214 -9.24536 -8.80020 -8.09706 -6.99270 -5.59658 0.67924 1.19782 1.59350 2.66856 2.86383 2.96031 3.06213 3.14097 3.69450 3.75351 3.81236 3.88515 4.28003 4.39575 4.70126 4.77843 4.90001 5.12787 5.15655 5.53634 5.58364 5.70026 5.80052 5.80964 5.91715 6.04652 6.25445 6.37315 6.78125 7.19089 7.26747 7.50846 7.94102 8.47229 10.11090 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.007487 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.029391 B = 3738.811219 C = 4883.665108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.157 4.157 3 C -0.019 4.019 4 C -0.086 4.086 5 C 0.265 3.735 6 N -0.424 5.424 7 C 0.269 3.731 8 N -1.053 6.053 9 S 2.655 3.345 10 O -0.990 6.990 11 O -0.987 6.987 12 C -1.020 5.020 13 H 0.133 0.867 14 C 0.157 3.843 15 N -0.809 5.809 16 Si 0.799 3.201 17 H -0.242 1.242 18 H -0.251 1.251 19 H -0.222 1.222 20 C -0.206 4.206 21 C 0.169 3.831 22 F -0.124 7.124 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.143 0.857 27 H 0.421 0.579 28 H 0.285 0.715 29 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.764 6.800 -0.883 12.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.159 4.159 3 C -0.040 4.040 4 C -0.094 4.094 5 C -0.050 4.050 6 N -0.100 5.100 7 C 0.165 3.835 8 N -0.793 5.793 9 S 2.757 3.243 10 O -0.981 6.981 11 O -0.977 6.977 12 C -1.154 5.154 13 H 0.151 0.849 14 C -0.065 4.065 15 N -0.436 5.436 16 Si 0.619 3.381 17 H -0.166 1.166 18 H -0.175 1.175 19 H -0.144 1.144 20 C -0.228 4.228 21 C 0.148 3.852 22 F -0.103 7.103 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.161 0.839 27 H 0.256 0.744 28 H 0.096 0.904 29 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -9.333 8.093 -0.047 12.354 hybrid contribution 0.260 -0.901 -0.175 0.954 sum -9.074 7.192 -0.222 11.581 Atomic orbital electron populations 1.20661 0.89559 1.03418 1.02766 1.19669 0.97257 0.91177 1.07791 1.20616 0.90649 0.97865 0.94838 1.15853 0.92322 0.85740 1.15491 1.25410 0.93523 0.92698 0.93347 1.81231 1.07844 1.10991 1.09932 1.16897 0.82940 0.91629 0.92031 1.53891 1.11436 1.45522 1.68498 1.02335 0.72556 0.75039 0.74335 1.93520 1.31992 1.85636 1.86922 1.93481 1.77007 1.86200 1.40980 1.30322 1.45633 1.10452 1.29041 0.84932 1.24365 0.92376 0.94247 0.95467 1.69953 1.37434 0.99514 1.36722 0.87882 0.82616 0.83869 0.83762 1.16576 1.17515 1.14378 1.21907 0.93632 1.00719 1.06544 1.17327 0.88971 0.81069 0.97789 1.91526 1.79461 1.46260 1.93010 0.90900 0.91003 0.91007 0.83903 0.74446 0.90438 0.79534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.82 36.00 0.35 -0.55 15 2 C -0.16 -1.83 5.88 -104.59 -0.62 -2.44 15 3 C -0.02 -0.21 9.39 -39.20 -0.37 -0.57 15 4 C -0.09 -1.21 5.76 -106.57 -0.61 -1.82 15 5 C 0.26 3.92 14.38 -22.48 -0.32 3.59 15 6 N -0.42 -6.86 18.54 41.83 0.78 -6.08 15 7 C 0.27 4.54 6.18 -83.57 -0.52 4.03 15 8 N -1.05 -19.55 5.49 32.56 0.18 -19.37 15 9 S 2.65 62.49 3.85 -107.50 -0.41 62.07 15 10 O -0.99 -25.31 16.02 -57.17 -0.92 -26.22 15 11 O -0.99 -24.72 16.25 -57.17 -0.93 -25.65 15 12 C -1.02 -25.85 8.13 30.60 0.25 -25.60 15 13 H 0.13 3.29 7.11 -52.49 -0.37 2.92 15 14 C 0.16 4.18 5.47 -17.82 -0.10 4.08 15 15 N -0.81 -21.60 13.96 55.43 0.77 -20.82 15 16 Si 0.80 19.32 26.54 -169.99 -4.51 14.80 15 17 H -0.24 -5.71 7.11 56.52 0.40 -5.31 15 18 H -0.25 -5.59 7.11 56.52 0.40 -5.19 15 19 H -0.22 -5.51 5.61 56.52 0.32 -5.19 15 20 C -0.21 -3.61 8.91 -39.36 -0.35 -3.96 15 21 C 0.17 2.52 7.24 -39.34 -0.28 2.23 15 22 F -0.12 -1.90 16.45 2.25 0.04 -1.86 15 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 15 24 H 0.07 0.62 7.62 -51.93 -0.40 0.23 15 25 H 0.07 0.47 8.08 -51.93 -0.42 0.05 15 26 H 0.14 1.10 8.06 -52.49 -0.42 0.68 15 27 H 0.42 6.80 8.25 -34.47 -0.28 6.51 15 28 H 0.28 6.92 8.31 -40.82 -0.34 6.58 15 29 H 0.19 3.73 4.45 -52.49 -0.23 3.50 15 LS Contribution 278.09 15.07 4.19 4.19 Total: -1.00 -29.92 278.09 -5.15 -35.07 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -1.77 Total: 4.88 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -2.57 Total: -21.02 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 1.73 Total: -46.28 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -1.85 Total: -51.87 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.51 Total: 14.80 kcal Atomic # 16 Polarization: 62.49 SS G_CDS: -0.41 Total: 62.07 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.92 -5.15 -35.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985348.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.077 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds